BAC Information

Click to search

BAC

Clone NameB6Ng01-208D17
Chromosome12 (Build37)
Map Location 47,351,761 - 47,352,652
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208D17.bB6Ng01-208D17.g
ACCGA027166GA027167
length1,176934
definitionB6Ng01-208D17.b B6Ng01-208D17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcacagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacca
tctagaggctgccatacccagggatccatcccataatcagcctccaaacg
ctgacaccattgcatacactagaaagattttatcgaaaggacccagatgt
agctgtctcttgtgagactatgccggggcctagcaaacacagaagtggga
tgctcacaatcagctaatggatggattatagggctcccaatggaggagct
agagaaagtagccaggagctaaagggatctgcaaccctataggtggaaca
cattatgaactaaccagtaccccggagctcttgactctagctgcatatta
tatcaaagatggcctagtcgtcatcactggaaagaagagtcccattgact
ggcaaactatatggcccagtacaggggaacactcaggcccaaaatggggg
aagtgggtggcaaccagatgggtgtg

gaattctcggtaaaatgttgaataaaacctcaaaatggattaaaaataac
tatataatgcacccaaataaaatttagtagaggagtacaaggctagttta
atattttaaaaaataagtggatctaatttaatgccaattgctcaacaaag
aaaaagtaccatactggtatatgtttatgaaatagaaaaactccaaaata
tataatgttttcagaaagccagaagttaaagaaaaaatgtaaacataatt
aaacacatagaagagctacaaataacgttaaactgagttgaaagaaacta
gatttaacaaggaatggacaaagacaaggatatttcttcttaccaccaag
ccaccctcacactgaaggcccttcctagtacaataggagaagaaagcatt
atatgtgataattcgtgaaaaaaatatcgttttctttgtttatagatgat
atgcttctctatgcagaaaattgaagaggactaggcagaattatgaaact
aataagttattgtactgaagttatgaggtacaaagtcaaaactggcaatc
caggtttctgtcctatcctgaatgaaaaccaaaacattatatataataac
atccaccaaattaaaatgcataggtgtaagttttacaattttacacaaaa
acaagtttattttattcttaataaacaaaacaaatgatcatggtcataga
taagaagtgggagtggaaggagctaaaggggtctgctaccctattggtgg
aagaacaatatgaactaaccagtaccccccagagcacctgtctctagctt
ctagctgcatatgtagcagaagatggcctagttggccatcattgggaaga
gaggccccttggtcttgcaactttatatgcctcagtacaggggaacacca
gggccaagaagtgggagtgggtgggtaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47351761_47352652
seq2: B6Ng01-208D17.g_109_999

seq1  AAATAACTATATAATGCACCCAAATAAAATTTAGTAGAGGAGTACAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTATATAATGCACCCAAATAAAATTTAGTAGAGGAGTACAAGGC  50

seq1  TAGTTTAATATTTTAAAAAATAAGTGGATCTAATTTAATGCCAATTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAATATTTTAAAAAATAAGTGGATCTAATTTAATGCCAATTGCTC  100

seq1  AACAAAGAAAAAGTACCATACTGGTATATGTTTATGAAATAGAAAAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAAAAGTACCATACTGGTATATGTTTATGAAATAGAAAAACTC  150

seq1  CAAAATATATAATGTTTTCAGAAAGCCAGAAGTTAAAGAAAAAATGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATAATGTTTTCAGAAAGCCAGAAGTTAAAGAAAAAATGTAAA  200

seq1  CATAATTAAACACATAGAAGAGCTACAAATAACGTTAAACTGAGTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAAACACATAGAAGAGCTACAAATAACGTTAAACTGAGTTGAAA  250

seq1  GAAACTAGATTTAACAAGGAATGGACAAAGACAAGGATATTTCTTCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGATTTAACAAGGAATGGACAAAGACAAGGATATTTCTTCTTAC  300

seq1  CACCAAGCCACCCTCACACTGAAGGCCCTTCCTAGTACAATAGGAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCCACCCTCACACTGAAGGCCCTTCCTAGTACAATAGGAGAAGA  350

seq1  AAGCATTATATGTGATAATTCGTGAAAAAAATATCGTTTTCTTTGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTATATGTGATAATTCGTGAAAAAAATATCGTTTTCTTTGTTTAT  400

seq1  AGATGATATGCTTCTCTATGCAGAAAATTGAAGAGGACTAGGCAGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATATGCTTCTCTATGCAGAAAATTGAAGAGGACTAGGCAGAATTA  450

seq1  TGAAACTAATAAGTTATTGTACTGAAGTTATGAGGTACAAAGTCAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAATAAGTTATTGTACTGAAGTTATGAGGTACAAAGTCAAAACT  500

seq1  GGCAATCCAGGTTTCTGTCCTATCCTGAATGAAAACCAAAACATTATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCCAGGTTTCTGTCCTATCCTGAATGAAAACCAAAACATTATATA  550

seq1  TAATAACATCCACCAAATTAAAATGCATAGGTGTAAGTTTTACAATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACATCCACCAAATTAAAATGCATAGGTGTAAGTTTTACAATTTTA  600

seq1  CACAAAAACAAGTTTATTTTATTCTTAATAAACAAAACAAATGATCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAACAAGTTTATTTTATTCTTAATAAACAAAACAAATGATCATGG  650

seq1  TCATAGATAAGAAGTGGGAGTGGAAGGAGCTAAAGGGGTCTGCTACCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATAAGAAGTGGGAGTGGAAGGAGCTAAAGGGGTCTGCTACCCTA  700

seq1  TTGGTGGAAGAACAATATGAACTAACCAGTACCCCCCAGAGCACCTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGAAGAACAATATGAACTAACCAGTACCCCCCAGAGCACCTGTCT  750

seq1  CTAGCTTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCATT  800

seq1  GGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCTCAGTACAGGG  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGAAGAGAGGCCCCTTGGTCTTGC-AACTTTATATGCCTCAGTACAGGG  849

seq1  GAACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGG  892
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGG  891


| Home | SequenceCutter | Blast | Download |