BAC Information

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BAC

Clone NameB6Ng01-208F21
Chromosome12 (Build37)15 (Build37)
Map Location 96,893,456 - 96,893,52372,653,881 - 72,654,945
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603
Downstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208F21.bB6Ng01-208F21.g
ACCGA027268GA027269
length8471,059
definitionB6Ng01-208F21.b B6Ng01-208F21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,893,456 - 96,893,523)(72,653,881 - 72,654,945)
sequence
gaattctcaaaagaatcaataaaaattgctaaaacaaatatttcaaaaag
tgttcaacgtccttatcagttggagaaattcaagtgagaacagcttggag
atttcatcctatcctagccagaatggcaagggtcagcagaaccctcagaa
caaatactgggggtagggagcgcggaagacgcactcaccgcgtctgctgt
gagtggcactgcaaactggtccagccactctggagatcagcgtggagaac
actcaaaaggctaaaaataaacttacagcatgacccggctataccactcc
ttggcatatgcccaaaagacctgacatcatactctacagatagttgctca
gccacgttcactgatgctcgattcacaataaatggggactggaaagaacc
tgaatgcctttcaactgatgaatggataatgaaaatgtggtacaaatgta
ctatataatactattcaactgtaaagaaatcatgaaatttacaggtaaat
ggatggaactagaaaatattatactgagtgagggaacccagactcagcaa
tacagactccacgtgttctcttttctctctgcttcctcatgccaagtctt
tagatgtgagtatacaacctggattaactgcaaaaaccaggaaattaaaa
agggaccatggcctttgagagctctaaagagaggaatattagcaggatac
agatgaaaaggggaacaggaaaatgagcagaggggacctttaattgcaga
ggagagaaagcaaacactaaggatgcttgaagaaccataaggaatcttgt
acatacaaaaattacacacacacacacacatatgcgtgtgtgtgtgt

gaattctcttgtctttagaaaagtaatggacaatgaaaggccttgccata
tacttcacatttaaaacttttctcctgtacatactgtgttatgtttagaa
agcagacatacatcacacacatcacacttgtatactgtatgaattctctt
gtgtttagaaagtgttgatggacaatggaaagccttgctacatacttcac
acttacggggtttctctcctgtatttattttcttatggttggaaagtgtt
gatggacaatggaaggccttgccacatacttcacacttgtagagcttttc
tcctgtacggattatcttgtgtttagaaagtaatgatggaaaatggaagg
acttgccacatcttcacacctgtagggctttctttttaaatgaattctct
ggtgattttgaaatatttttttcttctcaaagtctttgccacattgtttg
catatagcaattttcccctccatgtcagagatccaagctcagtgttgagc
aggacaattgcctagcatgggtagaaatgaagtttgaagatggaatgcag
aattttgttacccatagccagttctggtgatgtcataatccagtttctgg
ctactataagtaatgctgctatgaacatagtggagcatgtgtctgtgtta
tatgttagaacatttttgggggtatatacccagtagtggtatagctgggt
cttcaggtagaactatttccaattttctcaggaactgccagactgatttc
caaagtggtcttactagcttgcagtcccaccagcaatggaggactgttcc
tctttctccatatccttgccaacatcttctgtcacctgcctttttgatct
tagccattctgattggtgtgaggtggaatctcacggtcattttgatttgt
atttccctgatgactaagatgttgaacatttcttaagtgcttctcagcca
tttgagaattccttggttgagattctcttatttagctcttgtactcactt
ttaatagggtattgcttctctggagtctcccttctggggtcctttgtata
ttttgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96893456_96893523
seq2: B6Ng01-208F21.b_613_892 (reverse)

seq1  ACACACAACCCCCACACACATATGTGTGTGTGTGTGTG-------AGTAT  43
      |||||||     ||||| ||||||||||||||||||||        ||||
seq2  ACACACA-----CACACGCATATGTGTGTGTGTGTGTGTAATTTTTGTAT  45

seq1  GTACAGAGAGAC---AGAG-------AGAA----AAGAG-----------  68
      ||||| |||  |   |  |       || |     || |           
seq2  GTACA-AGATTCCTTATGGTTCTTCAAGCATCCTTAGTGTTTGCTTTCTC  94

seq1  --------------------------------------------------  68
                                                        
seq2  TCCTCTGCAATTAAAGGTCCCCTCTGCTCATTTTCCTGTTCCCCTTTTCA  144

seq1  --------------------------------------------------  68
                                                        
seq2  TCTGTATCCTGCTAATATTCCTCTCTTTAGAGCTCTCAAAGGCCATGGTC  194

seq1  --------------------------------------------------  68
                                                        
seq2  CCTTTTTAATTTCCTGGTTTTTGCAGTTAATCCAGGTTGTATACTCACAT  244

seq1  ------------------------------------  68
                                          
seq2  CTAAAGACTTGGCATGAGGAAGCAGAGAGAAAAGAG  280


seq1: chr15_72653881_72654945
seq2: B6Ng01-208F21.g_67_1125 (reverse)

seq1  ATATCCAAAATATACAAAGAACCCAAGAAGGGAGACTCCAGAGAAGCAAA  50
      |||| |||||||||||||| |||| |||||||||||||||||||||||| 
seq2  ATAT-CAAAATATACAAAGGACCCCAGAAGGGAGACTCCAGAGAAGCAA-  48

seq1  TAACCCTATTAAAAAAGTGGAGTAC-AGAGCTAAAT-AGAGAATTCTCAA  98
        ||||||||  |||||| |||||| |||||||||| |||||| ||||||
seq2  -TACCCTATT--AAAAGT-GAGTACAAGAGCTAAATAAGAGAA-TCTCAA  93

seq1  CCAAGGAA-TCTCAAATGGCTGAGAAGCACTTAAAGAAATGTTCAACATC  147
      |||||||| ||||||||||||||||||||||| |||||||||||||||| 
seq2  CCAAGGAATTCTCAAATGGCTGAGAAGCACTT-AAGAAATGTTCAACAT-  141

seq1  CTTAGTCATCAGGGAAATACAAATCAAAATGACCGTGAGATTCCACCTCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCATCAGGGAAATACAAATCAAAATGACCGTGAGATTCCACCTCA  191

seq1  CACCAATCAGAATGGCTAAGATCAAAAAGGCAGGTGACAGAAGATGTTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCAGAATGGCTAAGATCAAAAAGGCAGGTGACAGAAGATGTTGG  241

seq1  CAAGGATATGGAGAAAGAGGAACAGTCCTCCATTGCTGGTGGGACTGCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATATGGAGAAAGAGGAACAGTCCTCCATTGCTGGTGGGACTGCAA  291

seq1  GCTAGTAAGACCACTTTGGAAATCAGTCTGGCAGTTCCTGAGAAAATTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTAAGACCACTTTGGAAATCAGTCTGGCAGTTCCTGAGAAAATTGG  341

seq1  AAATAGTTCTACCTGAAGACCCAGCTATACCACTACTGGGTATATACCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTCTACCTGAAGACCCAGCTATACCACTACTGGGTATATACCCC  391

seq1  CAAAAATGTTCTAACATATAACACAGACACATGCTCCACTATGTTCATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTTCTAACATATAACACAGACACATGCTCCACTATGTTCATAG  441

seq1  CAGCATTACTTATAGTAGCCAGAAACTGGATTATGACATCACCAGAACTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTACTTATAGTAGCCAGAAACTGGATTATGACATCACCAGAACTG  491

seq1  GCTATGGGTAACAAAATTCTGCATTCCATCTTCAAACTTCATTTCTACCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGGTAACAAAATTCTGCATTCCATCTTCAAACTTCATTTCTACCC  541

seq1  ATGCTAGGCAATTGTCCTGCTCAACACTGAGCTTGGATCTCTGACATGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGCAATTGTCCTGCTCAACACTGAGCTTGGATCTCTGACATGGA  591

seq1  GGGGAAAATTGCTATATGCAAACAATGTGGCAAAGACTTTGAGAAGAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAATTGCTATATGCAAACAATGTGGCAAAGACTTTGAGAAGAAAA  641

seq1  AAATATTTCAAAATCACCAGAGAATTCATTTAAAAAGAAAGCCCTACAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCAAAATCACCAGAGAATTCATTTAAAAAGAAAGCCCTACAGG  691

seq1  TGTGAAGATGTGGCAAGTCCTTCCATTTTCCATCATTACTTTCTAAACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGATGTGGCAAGTCCTTCCATTTTCCATCATTACTTTCTAAACAC  741

seq1  AAGATAATCCGTACAGGAGAAAAGCTCTACAAGTGTGAAGTATGTGGCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATCCGTACAGGAGAAAAGCTCTACAAGTGTGAAGTATGTGGCAA  791

seq1  GGCCTTCCATTGTCCATCAACACTTTCCAACCATAAGAAAATAAATACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCATTGTCCATCAACACTTTCCAACCATAAGAAAATAAATACAG  841

seq1  GAGAGAAACCCCGTAAGTGTGAAGTATGTAGCAAGGCTTTCCATTGTCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAACCCCGTAAGTGTGAAGTATGTAGCAAGGCTTTCCATTGTCCA  891

seq1  TCAACACTTTCTAAACACAAGAGAATTCATACAGTATACAAGTGTGATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTTTCTAAACACAAGAGAATTCATACAGTATACAAGTGTGATGT  941

seq1  GTGTGATGTATGTCTGCTTTCTAAACATAACACAGTATGTACAGGAGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGTATGTCTGCTTTCTAAACATAACACAGTATGTACAGGAGAAA  991

seq1  AGTTTTAAATGTGAAGTATATGGCAAGGCCTTTCATTGTCCATTACTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAATGTGAAGTATATGGCAAGGCCTTTCATTGTCCATTACTTTT  1041

seq1  CTAAAGACAAGAGAATTC  1065
      ||||||||||||||||||
seq2  CTAAAGACAAGAGAATTC  1059


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