BAC Information

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BAC

Clone NameB6Ng01-208H08
Chromosome3 (Build37)12 (Build37)
Map Location 118,648,372 - 118,648,46662,588,305 - 62,589,473
singlet/doubletsingletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H08.bB6Ng01-208H08.g
ACCGA027334GA027335
length1461,172
definitionB6Ng01-208H08.b B6Ng01-208H08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,648,372 - 118,648,466)(62,588,305 - 62,589,473)
sequence
tcacatggcgagcaactattagattcttggactttctgatcatagtcaac
cattgttcacacacacacacacacacacacactacacacacacacatatg
tgtgtgtgtagtgtgtgtgtgtgtgtgtgtatatatatatatatat

gaattctctatttagatctgtaccccatttttaatagggttatttcattc
tctggtatctgtctttttgagttctttgtaaaattgggatattagccctc
tattggatgtagagttggtaaagatcttttctcaatctgtggattgctgt
tttgtgctatagatagtgtccttttgcgatgagtgggaaaaacatgaagt
tacagatgtctttaattacatacttttatttattttcatgacaatcttaa
gactaaatattgttgttatttacatttttcaatcatggaacctgaaataa
tataatatgttcaagaccatgatcccaatagtgattgaaagtcagttgtc
aggtgaacacattgtggccaatggggaaaaaaagtcttgaatatacagcc
tcctcatcttctgaagacttgaaacccaagttgaaatactaatatttgat
ttaaatctagtaatatagttgttaaaataaatcttaaaataacttagatt
tttcccacaatgttttgtttgtttgtttgtttttgagaaatggatgctta
agatagatgctctgtacccttgccgctgccaagaccaatatgttcaggac
tataattatgcacatagttagccctgacaccaagtatgcttgcatgatcc
agggcacatcttacaactatgatgtgcctgtgctagataatgggaccatg
cctgatgtgcacatttgggtgactctgggcctgagcctgaaatggctaaa
aaccctgtaaatgctcctgcctatggaagaggccccttccctgttgcctt
tcaacaaaaaaatgtgaaaaccaacatgccccccaaagttatgaaactag
ttttgctttagcagaatatcaccagttaaggatcacaatctatgataata
accactgattctgaagccttatcccttttcacaatgatttttattgacac
ttgattcatttctatcccttccactgtctgctacaatctagtgaaccatg
ggacagtacttaagtaactgcttgtttgactataaatcaaagatcactta
gcatatctgtagtcacggctgcatcactattgcaattcttttgacattta
aatatccatcgtaatctttgcctgttgttccattgtgtggtagtgattca
aattccaaacaattcaaggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118648372_118648466
seq2: B6Ng01-208H08.b_116_204

seq1  CACATACACACACACACACACACAC-ACACACACACACATATATATATAT  49
      |||| |||||||||||||||||||| ||||||||||||        ||||
seq2  CACACACACACACACACACACACACTACACACACACAC--------ATAT  42

seq1  ATATGTGTGT-GTGTGTGTGTGTGTGTGTGTATATATATATATATAT  95
       | ||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTAGTGTGTGTGTGTGTGTGTGTATATATATATATATAT  89


seq1: chr12_62588305_62589473
seq2: B6Ng01-208H08.g_65_1236

seq1  GAATTCTCTATTTAGATCTGTACCCCATTTTTAATAGGGTTATTTCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTAGATCTGTACCCCATTTTTAATAGGGTTATTTCATTC  50

seq1  TCTGGTATCTGTCTTTTTGAGTTCTTTGTAAAATTGGGATATTAGCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTATCTGTCTTTTTGAGTTCTTTGTAAAATTGGGATATTAGCCCTC  100

seq1  TATTGGATGTAGAGTTGGTAAAGATCTTTTCTCAATCTGTGGATTGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATGTAGAGTTGGTAAAGATCTTTTCTCAATCTGTGGATTGCTGT  150

seq1  TTTGTGCTATAGATAGTGTCCTTTTGCGATGAGTGGGAAAAACATGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTATAGATAGTGTCCTTTTGCGATGAGTGGGAAAAACATGAAGT  200

seq1  TACAGATGTCTTTAATTACATACTTTTATTTATTTTCATGACAATCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGTCTTTAATTACATACTTTTATTTATTTTCATGACAATCTTAA  250

seq1  GACTAAATATTGTTGTTATTTACATTTTTCAATCATGGAACCTGAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATATTGTTGTTATTTACATTTTTCAATCATGGAACCTGAAATAA  300

seq1  TATAATATGTTCAAGACCATGATCCCAATAGTGATTGAAAGTCAGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATGTTCAAGACCATGATCCCAATAGTGATTGAAAGTCAGTTGTC  350

seq1  AGGTGAACACATTGTGGCCAATGGGGAAAAAAAGTCTTGAATATACAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACACATTGTGGCCAATGGGGAAAAAAAGTCTTGAATATACAGCC  400

seq1  TCCTCATCTTCTGAAGACTTGAAACCCAAGTTGAAATACTAATATTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCTTCTGAAGACTTGAAACCCAAGTTGAAATACTAATATTTGAT  450

seq1  TTAAATCTAGTAATATAGTTGTTAAAATAAATCTTAAAATAACTTAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTAGTAATATAGTTGTTAAAATAAATCTTAAAATAACTTAGATT  500

seq1  TTTCCCACAATGTTTTGTTTGTTTGTTTGTTTTTGAGAAATGGATGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACAATGTTTTGTTTGTTTGTTTGTTTTTGAGAAATGGATGCTTA  550

seq1  AGATAGATGCTCTGTACCCTTGCCGCTGCCAAGACCAATATGTTCAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATGCTCTGTACCCTTGCCGCTGCCAAGACCAATATGTTCAGGAC  600

seq1  TATAATTATGCACATAGTTAGCCCTGACACCAAGTATGCTTGCATGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATGCACATAGTTAGCCCTGACACCAAGTATGCTTGCATGATCC  650

seq1  AGGGCACATCTTACAACTATGATGTGCCTGTGCTAGATAATGGGACCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACATCTTACAACTATGATGTGCCTGTGCTAGATAATGGGACCATG  700

seq1  CCTGATGTGCACATTTGGGTGACTCTGGGCCTGAGCCTGAAATGGCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTGCACATTTGGGTGACTCTGGGCCTGAGCCTGAAATGGCTAAA  750

seq1  AACCCTGTAAATGCTCCTGCCTATGGAAGAGGCCCCTTCCCTGTTGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTAAATGCTCCTGCCTATGGAAGAGGCCCCTTCCCTGTTGCCTT  800

seq1  TCAACAAAAAAATGTGAAAACCAACATGCCCCCCAAAGTTATGAAACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAAAAATGTGAAAACCAACATGCCCCCCAAAGTTATGAAACTAG  850

seq1  -TTTGC-TTAGCAGAATATCACCAGTTAA-GATCACAATCTATGATAATA  897
       ||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTGCTTTAGCAGAATATCACCAGTTAAGGATCACAATCTATGATAATA  900

seq1  ACCACTGATTCTGAAGCC-TATCCC-TTTCACAATGATTTTTATTGACAC  945
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  ACCACTGATTCTGAAGCCTTATCCCTTTTCACAATGATTTTTATTGACAC  950

seq1  TTGATTCATTTCTAT-CCTTCCACTGTCTGCTACAATCTAGTGAACCAT-  993
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  TTGATTCATTTCTATCCCTTCCACTGTCTGCTACAATCTAGTGAACCATG  1000

seq1  GGACAGTAC-TAAGTAACTGC-TGTTTGACTATAAATCAAAGATCACTTA  1041
      ||||||||| ||||||||||| ||||||||||||||||||||||||||| 
seq2  GGACAGTACTTAAGTAACTGCTTGTTTGACTATAAATCAAAGATCACTT-  1049

seq1  AGCATATCTGTAGTCACGCCTGCCATCACTA-TGC-ATTCTTTTGAACAT  1089
      |||||||||||||||||| ||| |||||||| ||| ||||||||| ||||
seq2  AGCATATCTGTAGTCACGGCTG-CATCACTATTGCAATTCTTTTG-ACAT  1097

seq1  TAAAATATCCATCGTAATCTTTGCTGTTTGTTCCTTTGTGTGTGTAGTTG  1139
      | ||||||||||||||||||||||   ||||||| ||||||| |||| ||
seq2  TTAAATATCCATCGTAATCTTTGCCTGTTGTTCCATTGTGTG-GTAG-TG  1145

seq1  AATCTCAAATTCAAAACAATTCAAAGGCTT  1169
      |   |||||||| ||||||||| |||||||
seq2  A--TTCAAATTCCAAACAATTC-AAGGCTT  1172


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