BAC Information

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BAC

Clone NameB6Ng01-208K12
Chromosome12 (Build37)
Map Location 55,906,531 - 55,907,614
singlet/doubletsinglet
Overlap genenone
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6
Downstream geneCfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208K12.bB6Ng01-208K12.g
ACCGA027478GA027479
length1,2061,112
definitionB6Ng01-208K12.b B6Ng01-208K12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcattatgggcccatcaccttcttggaaacctaaaatgttcca
ttaggaatggtagaaaacctaaatgttttaatgccatatttagcagacct
cagcaaggtttgaggaccacaatctattaaccataaactctgttcctaat
ttcttatttcagactcaaacctgaaaacatgtacaggaatctagatgaaa
ctttggtcacactgtgaactttgagattgtgttatttactgaaatgccct
gtttctagttatgggctcagcccttagcccacgcctttaatccctctggc
tggaatagacaagcccttcctacacacttttaattccaaacaatgaaggt
aaaaatagtttgtagaaggaagcacccatgtttgaaaagtgatgtctaat
tgaagagcagacaaagtgacgaatcagagaaagacttgacagaatgggat
atgcccaactctcatgaggagaggaaaggtgaagtggaaatttctgattt
ctttatattcagttatgtcatgtgatgtttttcaggaagctgtcttatga
gaggatgtttcgctgagaacagacacgtggtatttttctagaagctgtct
tgtgaaagggcgtgtgatattttgctggagcagatgcttgagaagacatg
atgtttagaaagaatgtaaaaacaaccccatagacagtgagaggacgctt
ttgcattggttcaccttacactgctttgctggtcttcattgatctccatt
tgttgtgacttcgtagactgtaacttatcaaagaacttcttgtggtattc
tagctgcttcttgccaatttcacagactgctgagtcagtggagattcaaa
gtttcttctggatggagctgccactgctgattcgtgattggtgacgctat
tgaactgaattactggtatcctgacaccactgacctggactgctgacatc
cctgaatgaagactgcatagcccctacagaactacttctaaacaggtcct
catcccccttctcttattaacttgaagtgtaacttaagattttggaagtc
attgatggtgttttgctgcacaaactacatgaaggaccgtttcattaagt
gtgacacagggtgtgaaaggctggatttgtcttaagccgaccaggaaaat
atggttccgtcaagccaagccgatgtagaagatcacgcgtacgtggatag
catact

gaattctgtacaactgaggttggtttcctctagaagttttgaatgttttc
taaacaacaggtaaggaaggtacctggtctgttaaatgggagaggggtaa
agaaataatctgaataaatgtagaattcagcgtgtgcagcctatgtgctt
ctaacgtgaggacacacacacacacatgttctgtgttacttgcctttaga
aactgcagggctaaggaaattatgtacacagctaggctgaggaagtgact
aactaatctggctgtggaatctcagagtaaataattcatttctggactcc
aaagcaggaacaaacagcaggaggtcgtgcatgcgtgtgggctctaggct
tctcagaaggccaggactaaatccatcctagatgtggtgaggaagggaac
agataaagggtagacagacaggaagagggtctaagccaggcatggcgacg
ttatattagggcctaggctttcttttctttttgtcccctccctccctctc
tctcttactttcttccctccccttcctcccacttcctccctccaccctcc
tttcccttccttctcctccccctcttcctcctatttgaaacaggtcttgg
tatgtagcctaggtcttgctgttactacatagattgcccttaaactttgt
ggcaatcctcttgcctcagcctcacaaacacagaatctgctaccatgcct
ttccttgtctgagccctctgaagacctctgtttcccacccaggcttcagt
ccagctcgccaggagcttcgccatggcagacctgtagcacagcacagact
ctcggctgactccggggtttgaggaggggctcacacaggttgaaagattt
ggaggttccacaataccacagggaaagccacacaccttccaggttccctc
tgcctgaatggagtcacactgaataataaagggggcagccctgctggtgc
ctcataatcaacaggcctccccttgggaaaggaaaagctttcaagctttg
ggggcagtaaccctcccgaaatccttagccttagaaatggggaaggctgc
taaaatttagtacatcaaaattttagagactttacatttgtggcatatgc
atttatggtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55906531_55907614
seq2: B6Ng01-208K12.g_66_1177 (reverse)

seq1  CTGAC--TAAATGC--ATGC--CAAATGT-AAGTCTCT-AAATTTTGATG  42
      |||||  |||||||  ||||  ||||||| |||||||| |||||||||||
seq2  CTGACCATAAATGCATATGCCACAAATGTAAAGTCTCTAAAATTTTGATG  50

seq1  T-CTAAATTTTA-CAGC--TTCCCATTTCT-AGGCTAAG--ATTCTGGAG  85
      | |||||||||| ||||  | ||||||||| ||||||||   ||| ||||
seq2  TACTAAATTTTAGCAGCCTTCCCCATTTCTAAGGCTAAGGATTTCGGGAG  100

seq1  GTTTACTGCCCC--AAGCT--GAAGCTTTTCCTT--CCCAGGGGAGCCCT  129
      | ||||||||||  |||||   ||||||||||||  || ||||||| |||
seq2  GGTTACTGCCCCCAAAGCTTGAAAGCTTTTCCTTTCCCAAGGGGAGGCCT  150

seq1  G-TGA-TATGAGGCACCAGCA-GGCTGCCCCC-TTATTATTCAGTGTGAC  175
      | ||| ||||||||||||||| |||||||||| |||||||||||||||||
seq2  GTTGATTATGAGGCACCAGCAGGGCTGCCCCCTTTATTATTCAGTGTGAC  200

seq1  TCCATTCAGGCAGAGGGAACCTGG-AGGTGTGTGGCTTTCCCTGTGGTAT  224
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCATTCAGGCAGAGGGAACCTGGAAGGTGTGTGGCTTTCCCTGTGGTAT  250

seq1  TGTGGAACCTCCAAATCTTTCAACCTGTGTGAGCCCCTCCTCAAACCCCG  274
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACCTCCAAATCTTTCAACCTGTGTGAGCCCCTCCTCAAACCCCG  300

seq1  GAGTCAGCCGAGAGTCTGTGCTGTGCTACAGGTCTGCCATGGCGAAGCTC  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCCGAGAGTCTGTGCTGTGCTACAGGTCTGCCATGGCGAAGCTC  350

seq1  CTGGCGAGCTGGACTGAAGCCTGGGTGGG-AACAGAGGTCTTCAGAGGGC  373
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGGCGAGCTGGACTGAAGCCTGGGTGGGAAACAGAGGTCTTCAGAGGGC  400

seq1  TCAGACAAGGAAAGGCATGGTAGCAGATTCTGTGTTTGTGAGGCTGAGGC  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAGGAAAGGCATGGTAGCAGATTCTGTGTTTGTGAGGCTGAGGC  450

seq1  AAGAGGATTGCCAC-AAGTTTAAGGGCAATCTATGTAGTAACAGCAAGAC  472
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGAGGATTGCCACAAAGTTTAAGGGCAATCTATGTAGTAACAGCAAGAC  500

seq1  CTAGGCTACATACCAAGACCTGTTTCAAATAGGAGGAAGAGGGGGAGGAG  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTACATACCAAGACCTGTTTCAAATAGGAGGAAGAGGGGGAGGAG  550

seq1  AAGGAAGGGAAAGGAGGGTGGAGGGAGGAAGTGGGAGGAAGGGGAGGGAA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGAAAGGAGGGTGGAGGGAGGAAGTGGGAGGAAGGGGAGGGAA  600

seq1  GAAAGTAAGAGAGAGAGGGAGGGAGGGGACAAAAAGAAAAGAAAGCCTAG  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAGAGAGAGAGGGAGGGAGGGGACAAAAAGAAAAGAAAGCCTAG  650

seq1  GCCCTAATATAACGTCGCCATGCCTGGCTTAGACCCTCTTCCTGTCTGTC  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAATATAACGTCGCCATGCCTGGCTTAGACCCTCTTCCTGTCTGTC  700

seq1  TACCCTTTATCTGTTCCCTTCCTCACCACATCTAGGATGGATTTAGTCCT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTATCTGTTCCCTTCCTCACCACATCTAGGATGGATTTAGTCCT  750

seq1  GGCCTTCTGAGAAGCCTAGAGCCCACACGCATGCACGACCTCCTGCTGTT  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTGAGAAGCCTAGAGCCCACACGCATGCACGACCTCCTGCTGTT  800

seq1  TGTTCCTGCTTTGGAGTCCAGAAATGAATTATTTACTCTGAGATTCCACA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGCTTTGGAGTCCAGAAATGAATTATTTACTCTGAGATTCCACA  850

seq1  GCCAGATTAGTTAGTCACTTCCTCAGCCTAGCTGTGTACATAATTTCCTT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTAGTTAGTCACTTCCTCAGCCTAGCTGTGTACATAATTTCCTT  900

seq1  AGCCCTGCAGTTTCTAAAGGCAAGTAACACAGAACATGTGTGTGTGTGTG  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCAGTTTCTAAAGGCAAGTAACACAGAACATGTGTGTGTGTGTG  950

seq1  TCCTCACGTTAGAAGCACATAGGCTGCACACGCTGAATTCTACATTTATT  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACGTTAGAAGCACATAGGCTGCACACGCTGAATTCTACATTTATT  1000

seq1  CAGATTATTTCTTTACCCCTCTCCCATTTAACAGACCAGGTACCTTCCTT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTTCTTTACCCCTCTCCCATTTAACAGACCAGGTACCTTCCTT  1050

seq1  ACCTGTTGTTTAGAAAACATTCAAAACTTCTAGAGGAAACCAACCTCAGT  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGTTTAGAAAACATTCAAAACTTCTAGAGGAAACCAACCTCAGT  1100

seq1  TGTACAGAATTC  1084
      ||||||||||||
seq2  TGTACAGAATTC  1112


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