BAC Information

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BAC

Clone NameB6Ng01-208N06
Chromosome12 (Build37)
Map Location 31,521,748 - 31,644,519
singlet/doubletdoublet
Overlap geneLOC100043055, Acp1, Sh3yl1
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18
Downstream geneLOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208N06.bB6Ng01-208N06.g
ACCGA027603GA027604
length4261,031
definitionB6Ng01-208N06.b B6Ng01-208N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,521,748 - 31,522,179)(31,643,500 - 31,644,519)
sequence
cagggctttgtacctgccaggcaagtgcactgtccactgagctacatccc
cagcccattacagttcttcctaactcagaaaaatacaactttatcttcaa
caccagagacctgtgctttgacatgtctagctaaagagatgctaggttag
tattagcatcctaaccacccgatggaatggaaaagacccaagagtggcca
cagaagcacaagtaagtttaatggagtcagtgttctcctaacttggcccc
cttatctggcttcattgagagaggatgcacttagtcctgcagtgactgat
gtgcagggggtgggggctggagagtgatagaaggcagggcgtaggagctc
ccccttctcagaggaacaggggagaaggaatggggaagtgggaaagcttt
gagaggaagagactgggaggagaggg
gaattctctccttttgaaagatgaaggaccaagatagatccctaggatcc
atatgatagaaggagagaactgactcctacaagttgtcttttagcctcca
caaatgctatatgttgtgtacaatgggatcagagacatggggtcacagag
aaaacatgaaaacgagaacagcaggacccagctgagccaggaaaaggcaa
aagcacaaggttcatcaggaaagacacttaaactgtttttatctacatga
taatatttacaattttgattacccagtttctagacaatattacttatagt
tatacaaaatgctaatttctcaatagtttataaattcagtagcatataat
ttggtgacttccatggcaaatttagaacattaaattaatagctgtttaat
ctttagcctcagtgtatattcaactcactttttaaaaagtgcttaattct
ttcaagataaatttctaaggaatatttaagtaaaacaagtggagaaacaa
ttttactataaagccatggtctgtaaatggcaatgcttggtcctgcacag
tctctactggcctctcaaagtctatcagagaccaaaagcatgccttgtca
ctaaacaatattcacaattaaacttactttaaaaaatctcatagagctat
gaacactttccaagatattttcgtaacccatcaaattaactggaaattat
gtgattgtaatagggtggctataagtaatttttaatagctttttacttac
cagttttctcatgatagctagaaagctcaggatatagcttatatttcatt
tctattacctgttaaaataaaaataaaatgggggggggggaatgagattt
aaaaggtttactacagtatataaaacacacaaataccagaactcagctga
accatctaagagattgccacacccgggggatccatctcctaatctatctt
ctaacgctgactccattgtcttcaccagctatgaatttgttggaaaggaa
ccctgatatagcttgtctcgatggaggctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31521748_31522179
seq2: B6Ng01-208N06.b_48_479

seq1  GAATTCCAGGGCTTTGTACCTGCCAGGCAAGTGCACTGTCCACTGAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCTTTGTACCTGCCAGGCAAGTGCACTGTCCACTGAGCTA  50

seq1  CATCCCCAGCCCATTACAGTTCTTCCTAACTCAGAAAAATACAACTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAGCCCATTACAGTTCTTCCTAACTCAGAAAAATACAACTTTAT  100

seq1  CTTCAACACCAGAGACCTGTGCTTTGACATGTCTAGCTAAAGAGATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACACCAGAGACCTGTGCTTTGACATGTCTAGCTAAAGAGATGCTA  150

seq1  GGTTAGTATTAGCATCCTAACCACCCGATGGAATGGAAAAGACCCAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTATTAGCATCCTAACCACCCGATGGAATGGAAAAGACCCAAGAG  200

seq1  TGGCCACAGAAGCACAAGTAAGTTTAATGGAGTCAGTGTTCTCCTAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAGAAGCACAAGTAAGTTTAATGGAGTCAGTGTTCTCCTAACTT  250

seq1  GGCCCCCTTATCTGGCTTCATTGAGAGAGGATGCACTTAGTCCTGCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCTTATCTGGCTTCATTGAGAGAGGATGCACTTAGTCCTGCAGTG  300

seq1  ACTGATGTGCAGGGGGTGGGGGCTGGAGAGTGATAGAAGGCAGGGCGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTGCAGGGGGTGGGGGCTGGAGAGTGATAGAAGGCAGGGCGTAG  350

seq1  GAGCTCCCCCTTCTCAGAGGAACAGGGGAGAAGGAATGGGGAAGTGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCCCTTCTCAGAGGAACAGGGGAGAAGGAATGGGGAAGTGGGAA  400

seq1  AGCTTTGAGAGGAAGAGACTGGGAGGAGAGGG  432
      ||||||||||||||||||||||||||||||||
seq2  AGCTTTGAGAGGAAGAGACTGGGAGGAGAGGG  432

seq1: chr12_31643500_31644519
seq2: B6Ng01-208N06.g_67_1097 (reverse)

seq1  ATAGCCTCACACGAGAC-AGCTATATCAGGG-TCCTTT-CAACAAATTC-  46
      ||||||||   |||||| ||||||||||||| |||||| |||||||||| 
seq2  ATAGCCTCCATCGAGACAAGCTATATCAGGGTTCCTTTCCAACAAATTCA  50

seq1  TTGCTGGTGTATGCAATGGTGTCAGCGTTTGGAGACTGATTATGGGATGG  96
      | ||||||| |  |||||| ||||||||| | |||  ||||| | |||||
seq2  TAGCTGGTGAAGACAATGGAGTCAGCGTTAGAAGATAGATTAGGAGATGG  100

seq1  AT-CCCCGGGTGTGGCAATCTC-TAGATGG-TCAGCTGAGTTCTGGT-TT  142
      || ||||||||||||||||||| ||||||| |||||||||||||||| ||
seq2  ATCCCCCGGGTGTGGCAATCTCTTAGATGGTTCAGCTGAGTTCTGGTATT  150

seq1  TGTGTGTTTTATATACTGTAGT-AAGCTTTTAAATCTCATT-CCCCCCCC  190
      |||||||||||||||||||||| || ||||||||||||||| ||||||||
seq2  TGTGTGTTTTATATACTGTAGTAAACCTTTTAAATCTCATTCCCCCCCCC  200

seq1  CCATTTTATTTTTATTTTAACAGGTAATAGAAATG-AATATAAGCTATAT  239
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCATTTTATTTTTATTTTAACAGGTAATAGAAATGAAATATAAGCTATAT  250

seq1  CCTGAGCTTTCTAGCTATCATGAGAAAACTGGTAAGTAAAAAGCTATTAA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTTTCTAGCTATCATGAGAAAACTGGTAAGTAAAAAGCTATTAA  300

seq1  AAATTACTTATAGCCACCCTATTACAATCACATAATTTCCAGTTAATTTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTATAGCCACCCTATTACAATCACATAATTTCCAGTTAATTTG  350

seq1  ATGGGTTACGAAAATATCTTGGAAAGTGTTCATAGCTCTATGAGATTTTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTACGAAAATATCTTGGAAAGTGTTCATAGCTCTATGAGATTTTT  400

seq1  TAAAGTAAGTTTAATTGTGAATATTGTTTAGTGACAAGGCATGCTTTTGG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAGTTTAATTGTGAATATTGTTTAGTGACAAGGCATGCTTTTGG  450

seq1  TCTCTGATAGACTTTGAGAGGCCAGTAGAGACTGTGCAGGACCAAGCATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATAGACTTTGAGAGGCCAGTAGAGACTGTGCAGGACCAAGCATT  500

seq1  GCCATTTACAGACCATGGCTTTATAGTAAAATTGTTTCTCCACTTGTTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTACAGACCATGGCTTTATAGTAAAATTGTTTCTCCACTTGTTTT  550

seq1  ACTTAAATATTCCTTAGAAATTTATCTTGAAAGAATTAAGCACTTTTTAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATATTCCTTAGAAATTTATCTTGAAAGAATTAAGCACTTTTTAA  600

seq1  AAAGTGAGTTGAATATACACTGAGGCTAAAGATTAAACAGCTATTAATTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTGAATATACACTGAGGCTAAAGATTAAACAGCTATTAATTT  650

seq1  AATGTTCTAAATTTGCCATGGAAGTCACCAAATTATATGCTACTGAATTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTAAATTTGCCATGGAAGTCACCAAATTATATGCTACTGAATTT  700

seq1  ATAAACTATTGAGAAATTAGCATTTTGTATAACTATAAGTAATATTGTCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATTGAGAAATTAGCATTTTGTATAACTATAAGTAATATTGTCT  750

seq1  AGAAACTGGGTAATCAAAATTGTAAATATTATCATGTAGATAAAAACAGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGGGTAATCAAAATTGTAAATATTATCATGTAGATAAAAACAGT  800

seq1  TTAAGTGTCTTTCCTGATGAACCTTGTGCTTTTGCCTTTTCCTGGCTCAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTCTTTCCTGATGAACCTTGTGCTTTTGCCTTTTCCTGGCTCAG  850

seq1  CTGGGTCCTGCTGTTCTCGTTTTCATGTTTTCTCTGTGACCCCATGTCTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTGCTGTTCTCGTTTTCATGTTTTCTCTGTGACCCCATGTCTC  900

seq1  TGATCCCATTGTACACAACATATAGCATTTGTGGAGGCTAAAAGACAACT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCATTGTACACAACATATAGCATTTGTGGAGGCTAAAAGACAACT  950

seq1  TGTAGGAGTCAGTTCTCTCCTTCTATCATATGGATCCTAGGGATCTATCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGTCAGTTCTCTCCTTCTATCATATGGATCCTAGGGATCTATCT  1000

seq1  TGGTCCTTCATCTTTCAAAAGGAGAGAATTC  1020
      |||||||||||||||||||||||||||||||
seq2  TGGTCCTTCATCTTTCAAAAGGAGAGAATTC  1031