BAC Information

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BAC

Clone NameB6Ng01-208N21
Chromosome12 (Build37)
Map Location 10,785,977 - 10,787,163
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14, LOC238074
Downstream geneLOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208N21.bB6Ng01-208N21.g
ACCGA027633GA027634
length1,203944
definitionB6Ng01-208N21.b B6Ng01-208N21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagattttctcagtttcattcattctacatgcaagcttcttac
ttaacaagctccacaaagatacacacttccatctattctagaaagacaca
gagaggatacatcaagccaggcctgaagggaaattcagacctgagtacag
ggaagtgtctatgcagctgtgagttctttacatctggaagaaaactgtag
acattaagccactgtatgtattatagtttggctttgtgtgatggtttgtg
tagccagtggtacaggaaacacttgtttactagtatagcactttagagtt
tgcaatggtttcccccagtattctgacatatattcactatgaaatatctt
gcatgcagaagggttgatgggctacttttttcatattgtgataaactaca
gagctgaagcattttaggggagaaattgtttagcttagagttctaagtaa
ttgacggaggaaaagcatggccatgtgtgagttcagacaacaggagtgaa
gctctaacatggtttggacagtcgggaagcagaggaaaaactggccctga
aattgagatgggctataattcacaagacacgccatgctttgacctatttc
ttccagcaaggccccatctcctaaatatctcatattctcccacaacaaca
acaccaggtggctagagaccaagtgttcaaacacatgagttaagagtaga
gtcatttcacattcaaaccagaagagagaggatacctacttttaataggt
aaataaaatcatagtggatggtcttgtctggctctcattggttaattatt
cagccaacctagaccttggtctttcaactccataagccactacattattc
cctaaagtcatcaataattttcatgtaaaatcatgatggtgcctacctag
tgccctttctatcagagtagcagtattacctgaggcaaacccaagtcttc
cttatgttccccttttccaatctcagattttttggttctgaagttttgat
gagatggaaagcatcatctagatatttccatcatgttctatccttcttta
cctttaaggatggtgttctttggaagtcaccatctcaccttgttctagcc
taccttcttgggccttcctttacacttgttaaataattaataattaataa
attaattaataaaataaaaggaaatctattaaggttctgacctggggata
tct

gaattctgacacacccagaatctcaggttcacaggaacccggaatcacag
tatcacagagaaatctggaccctgaggagtcctgaatcaacaggattata
ggaaggacagactctaatcagatatattgagggcagggagcagttgaggt
aatcagatggaaggaggcaagcataagaacagaaacaacagaaaccaagg
ttacttggcatcatcagaaccaaactctctcaccatagcaagtcctggat
acaccatcacaccagaaaagcaagatatggatttaaagttactttttttt
tccattttttattaggtatttagctcatttacatttccaatgctatacca
aaagtcccccatatccacccacccccactcccctgcccacccactccccc
tttttggccctggtgttcccctgtactggggcatataaagtttgcaagtc
caatgggcctctctttccagtgatggccaactaggccatcttttgatata
tatgcagctagagtcaagagctccggggtactggttagttcataatgttg
ttccacctatagggttgcagatccctttagctccttggctactttctcta
gctcctccattgggagccctgtgatccatccattagctgactgtgagcat
ccacttctgtgtttgctaggccccggcatagtctctcacaagagacagct
acatctgggtcctttcaataaaatcttgctagtgtatgcaatggtgtcag
cgtttggatgctgattatggggtggatccctggatatggcagtctctaca
tggtccattctatcatctcagctccaaactttgtctctgtaactccctcc
catgggtgttttgttcccaaatctaaggaggggcatagtgtccacacttc
agtcttcattcttcttgagtttcatgtgtttagcaattatatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10785977_10787163
seq2: B6Ng01-208N21.b_45_1247

seq1  GAATTCTCAGATTTTCTCAGTTTCATTCATTCTACATGCAAGCTTCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATTTTCTCAGTTTCATTCATTCTACATGCAAGCTTCTTAC  50

seq1  TTAACAAGCTCCACAAAGATACACACTTCCATCTATTCTAGAAAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGCTCCACAAAGATACACACTTCCATCTATTCTAGAAAGACACA  100

seq1  GAGAGGATACATCAAGCCAGGCCTGAAGGGAAATTCAGACCTGAGTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATACATCAAGCCAGGCCTGAAGGGAAATTCAGACCTGAGTACAG  150

seq1  GGAAGTGTCTATGCAGCTGTGAGTTCTTTACATCTGGAAGAAAACTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTCTATGCAGCTGTGAGTTCTTTACATCTGGAAGAAAACTGTAG  200

seq1  ACATTAAGCCACTGTATGTATTATAGTTTGGCTTTGTGTGATGGTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGCCACTGTATGTATTATAGTTTGGCTTTGTGTGATGGTTTGTG  250

seq1  TAGCCAGTGGTACAGGAAACACTTGTTTACTAGTATAGCACTTTAGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTGGTACAGGAAACACTTGTTTACTAGTATAGCACTTTAGAGTT  300

seq1  TGCAATGGTTTCCCCCAGTATTCTGACATATATTCACTATGAAATATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGGTTTCCCCCAGTATTCTGACATATATTCACTATGAAATATCTT  350

seq1  GCATGCAGAAGGGTTGATGGGCTACTTTTTTCATATTGTGATAAACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGAAGGGTTGATGGGCTACTTTTTTCATATTGTGATAAACTACA  400

seq1  GAGCTGAAGCATTTTAGGGGAGAAATTGTTTAGCTTAGAGTTCTAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAAGCATTTTAGGGGAGAAATTGTTTAGCTTAGAGTTCTAAGTAA  450

seq1  TTGACGGAGGAAAAGCATGGCCATGTGTGAGTTCAGACAACAGGAGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGGAGGAAAAGCATGGCCATGTGTGAGTTCAGACAACAGGAGTGAA  500

seq1  GCTCTAACATGGTTTGGACAGTCGGGAAGCAGAGGAAAAACTGGCCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAACATGGTTTGGACAGTCGGGAAGCAGAGGAAAAACTGGCCCTGA  550

seq1  AATTGAGATGGGCTATAATTCACAAGACACGCCATGCTTTGACCTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGATGGGCTATAATTCACAAGACACGCCATGCTTTGACCTATTTC  600

seq1  TTCCAGCAAGGCCCCATCTCCTAAATATCTCATATTCTCCCACAACAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCAAGGCCCCATCTCCTAAATATCTCATATTCTCCCACAACAACA  650

seq1  ACACCAGGTGGCTAGAGACCAAGTGTTCAAACACATGAGTTAAGAGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGTGGCTAGAGACCAAGTGTTCAAACACATGAGTTAAGAGTAGA  700

seq1  GTCATTTCACATTCAAACCAGAAGAGAGAGGATACCTACTTTTAATAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCACATTCAAACCAGAAGAGAGAGGATACCTACTTTTAATAGGT  750

seq1  AAATAAAATCATAGTGGATGGTCTTGTCTGGCTCTCATTGGTTAATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATCATAGTGGATGGTCTTGTCTGGCTCTCATTGGTTAATTATT  800

seq1  CAGCCAACCTAGACCTTGGTCTTTCAACTCCATAAGCCACTACATTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACCTAGACCTTGGTCTTTCAACTCCATAAGCCACTACATTATTC  850

seq1  CCTAAAGTCATCAATAATTTTCATGTAAAATCATGATGGTGCCTACCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTCATCAATAATTTTCATGTAAAATCATGATGGTGCCTACCTAG  900

seq1  TGCCCTTTCTATCAGAGTAGCAGTATTACCTGAGGCAAACCCAAGTC-TC  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCCCTTTCTATCAGAGTAGCAGTATTACCTGAGGCAAACCCAAGTCTTC  950

seq1  CTTATGTTCCCCTTTTCCAATCTCAGATTTTTT-GTTCTG-AGTTTTGAT  997
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  CTTATGTTCCCCTTTTCCAATCTCAGATTTTTTGGTTCTGAAGTTTTGAT  1000

seq1  GAGATGGAAAGCATCATCTAGATA-TTCCATCATG-TCTAT-CTTCTTTA  1044
      |||||||||||||||||||||||| |||||||||| ||||| ||||||||
seq2  GAGATGGAAAGCATCATCTAGATATTTCCATCATGTTCTATCCTTCTTTA  1050

seq1  CCTTTAAAGAT-GTG-TCTTT-GAAGTCAACATCTTCACCTTG-TCTAG-  1089
      ||||||| ||| ||| ||||| ||||||| |||| |||||||| ||||| 
seq2  CCTTTAAGGATGGTGTTCTTTGGAAGTCACCATC-TCACCTTGTTCTAGC  1099

seq1  CTA-CTTCTTGG--CTTCCTTT--ACTTGTTAAATAAATA--AATAAATA  1132
      ||| ||||||||  ||||||||  ||||||||||||| ||  ||| ||||
seq2  CTACCTTCTTGGGCCTTCCTTTACACTTGTTAAATAATTAATAATTAATA  1149

seq1  AATAAATAAAT-AAATAAATAGAAATCATATATAGTTTTCTGACTTGGGG  1181
      ||| ||| ||| |||||||  |||||| ||| ||   ||||||| |||||
seq2  AATTAATTAATAAAATAAAAGGAAATC-TAT-TAAGGTTCTGACCTGGGG  1197

seq1  ATATCT  1187
      ||||||
seq2  ATATCT  1203


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