BAC Information

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BAC

Clone NameB6Ng01-209B21
Chromosome12 (Build37)
Map Location 51,469,228 - 51,470,278
singlet/doubletsinglet
Overlap genePrkcm
Upstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209B21.bB6Ng01-209B21.g
ACCGA027820GA027821
length6361,041
definitionB6Ng01-209B21.b B6Ng01-209B21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccagatgttcaaagaaaatatagagtcaacatctcttaaatta
ctatttcaaatctaaacatatgtacacttgcaaacatcttttacaaagtt
atgattctaataccaaatccaggaaagatacagcagaaactgtaaactat
aacttaatatccctcgttaacattgattcaaaaatcctcatcaaaatact
catagagttttcagacatatagctcaaggggaggcccaaggcctcacact
attcctgagactatggatcttcaaaaaaggggatctatcatgactgccct
ccgaaagacccaaaaagtagctgaatgtgtcagatgcagatatttgcacc
caaccaatggacagaagcagctgaccccagttgttgaattagggaaggct
gaaagaagctgaggagaagggtgatcctgtaggaggaccagcagtctcaa
ttaatctggaaccccaagatctttcaaacactgaaccaccaaacagacag
catacaccagctgatataaggctcccaacacacatacagtagaggatttc
caggtctgtgttcattcggagatgatgcacctaacactcaaagtcccagt
gagtttagaggtcaggtggagtggaggggtgttggg

gaattcctgctgcaaacgtcagaagttagcaagggactcttcctgtaggc
tactgtcctttgctgtggcagtgttcagtcattttcaaagtcaatgtcat
gggacatcaggaagaagactttccagatctattcatgtttatattaaaaa
ataacactgatcaagtcacatggacttggttggaatgtatctaggtatta
attaattaccacgtgttccataattaaaaattgtatgtgtggcattgatt
atacagggagataaaagattgattttttccctatttatactttttaaata
atctattctccaggctaaataaatatttcaaagaatattatgtaggagct
tgggtaaataaggtagacctgctcctttatatacattttttttttgttga
gacacggtttctctgtgtatccctggctgtcctggagctcactctgtaga
ccaggctggcctcgaactcagaaatccacctgcctctgcctcccaaatcc
tgggtttaaaagcatgtgccaccactgcccggctacattattttctcatc
agacataaaagatttgatcatttagctcagtgggaccataataaaatcaa
tccatgaggaagtattaccttgtctcaacaatacattataaattatctag
aaaaaaataactgggcatggtagctcacacctataatcctagcactaaga
agagtgtggcaagaggattgtcatggctgcgaagctggccagagttacat
agtcaattctaagccagactaggacatagtgtaagaccctgtcctcagct
gtttagaagaaagtgctgactttggggaagagttttcagctgtcacttaa
tgcattctttaggaaacctaggaagcagtagactgttgtaaaatgaaagc
caagggcagtggaaacatgagtttatattttctaaaatgtcctttccagt
tcggtatatgtgcctttactggatattgtctgatagctgctcttgaatct
gtatatttatctacgcctaagcatttctagagaaatagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51469228_51470278
seq2: B6Ng01-209B21.g_64_1104 (reverse)

seq1  TTGCTATTTCTCTAGAAATGGCCTTAGGCGTAGATAAATATACAGATTTC  50
      ||||||||||||||||||||  |||||||||||||||||||||||| |||
seq2  TTGCTATTTCTCTAGAAATG--CTTAGGCGTAGATAAATATACAGA-TTC  47

seq1  AAAGAAGCAGCTTATTCAAGACAATATCCAAGTAAAGGCCACATATACCG  100
      ||   |||||| |||   ||||||||||| |||||||| |||||||||||
seq2  AA--GAGCAGC-TAT--CAGACAATATCC-AGTAAAGG-CACATATACCG  90

seq1  AACTGGAAAGGACATTTTTAGAAATATAAACTCATGTTTCCACTGCCCTT  150
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  AACTGGAAAGGACATTTTAGAAAATATAAACTCATGTTTCCACTGCCCTT  140

seq1  GGCTTTCATTTTACAACAGTCTACTGCTTCCTAGGTTTCCTAAAGAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCATTTTACAACAGTCTACTGCTTCCTAGGTTTCCTAAAGAATGC  190

seq1  ATTAAGTGACAGCTGAAAACTCTTCCCCAAAGTCAGCACTTTCTTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGACAGCTGAAAACTCTTCCCCAAAGTCAGCACTTTCTTCTAAA  240

seq1  CAGCTGAGGACAGGGTCTTACACTATGTCCTAGTCTGGCTTAGAATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGGACAGGGTCTTACACTATGTCCTAGTCTGGCTTAGAATTGAC  290

seq1  TATGTAACTCTGGCCAGCTTCGCAGCCATGACAATCCTCTTGCCACACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACTCTGGCCAGCTTCGCAGCCATGACAATCCTCTTGCCACACTC  340

seq1  TTCTTAGTGCTAGGATTATAGGTGTGAGCTACCATGCCCAGTTATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTGCTAGGATTATAGGTGTGAGCTACCATGCCCAGTTATTTTTT  390

seq1  TCTAGATAATTTATAATGTATTGTTGAGACAAGGTAATACTTCCTCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATAATTTATAATGTATTGTTGAGACAAGGTAATACTTCCTCATGG  440

seq1  ATTGATTTTATTATGGTCCCACTGAGCTAAATGATCAAATCTTTTATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTATTATGGTCCCACTGAGCTAAATGATCAAATCTTTTATGTC  490

seq1  TGATGAGAAAATAATGTAGCCGGGCAGTGGTGGCACATGCTTTTAAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGAAAATAATGTAGCCGGGCAGTGGTGGCACATGCTTTTAAACCC  540

seq1  AGGATTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTG  590

seq1  GTCTACAGAGTGAGCTCCAGGACAGCCAGGGATACACAGAGAAACCGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAGCTCCAGGACAGCCAGGGATACACAGAGAAACCGTGT  640

seq1  CTCAACAAAAAAAAAATGTATATAAAGGAGCAGGTCTACCTTATTTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAAAAAAAAAATGTATATAAAGGAGCAGGTCTACCTTATTTACCC  690

seq1  AAGCTCCTACATAATATTCTTTGAAATATTTATTTAGCCTGGAGAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTACATAATATTCTTTGAAATATTTATTTAGCCTGGAGAATAGA  740

seq1  TTATTTAAAAAGTATAAATAGGGAAAAAATCAATCTTTTATCTCCCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAAAGTATAAATAGGGAAAAAATCAATCTTTTATCTCCCTGTA  790

seq1  TAATCAATGCCACACATACAATTTTTAATTATGGAACACGTGGTAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATGCCACACATACAATTTTTAATTATGGAACACGTGGTAATTAA  840

seq1  TTAATACCTAGATACATTCCAACCAAGTCCATGTGACTTGATCAGTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCTAGATACATTCCAACCAAGTCCATGTGACTTGATCAGTGTTA  890

seq1  TTTTTTAATATAAACATGAATAGATCTGGAAAGTCTTCTTCCTGATGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATATAAACATGAATAGATCTGGAAAGTCTTCTTCCTGATGTCC  940

seq1  CATGACATTGACTTTGAAAATGACTGAACACTGCCACAGCAAAGGACAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATTGACTTTGAAAATGACTGAACACTGCCACAGCAAAGGACAGT  990

seq1  AGCCTACAGGAAGAGTCCCTTGCTAACTTCTGACGTTTGCAGCAGGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACAGGAAGAGTCCCTTGCTAACTTCTGACGTTTGCAGCAGGAATT  1040

seq1  C  1051
      |
seq2  C  1041


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