BAC Information

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BAC

Clone NameB6Ng01-209H15
Chromosome12 (Build37)
Map Location 18,566,518 - 18,567,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160, 5730507C01Rik
Downstream geneEG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209H15.bB6Ng01-209H15.g
ACCGA028084GA028085
length1,1641,143
definitionB6Ng01-209H15.b B6Ng01-209H15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgctcttgcagcaccatatctgcctgcatgctgccgtgtttcc
cactataataatagtggaccgagactctgaaactgtaagctaaccccaat
taaatgttttcctgtgggaagccattgcagagtggcagttgcagagtggc
agttggctactgctggccaccacacatacatacttttgccaagatgaggt
tttgagaattaaccaaagttaaccaatcagatgagagacaagttaaccaa
tcagatgagagacaagttaaccaatcagatgagagagaacgcctctccta
ggcctatataagcagcaccaattatgggcttggggtcacttcgcctctgc
aatcaagctctcccaataaacgtgtacagaaggatcctgttgcagcgtca
ttcttcctggccacttgggcgcgtgcaagaagtggtgccgaaaacccggg
aaaagaaacatcttcaggcacaagcgaagaccccctgctacagggaggat
tcagaactgcatcacagggaaggagcggttaatagagtgttcccgtaaaa
cagactgctgagaaggatccagcatggattcagaactcttcagctgggga
acggtggtaccggtaagtataaagaaattaatgtgagtctctgagaggca
tgctttcctatgaaatagaaacgataattgtcgctggggttgtactgctt
gctatctttcttgccttgatcttatgccatagccttaattgccaacgccc
aaaatgtaaagatacaaaagatagtataaaaaataaaaagcagaaaatta
agtcaatataccctcctctcgaggactctgagttgttagaattgtccagc
tcagaggattcagaattatcagcaggagaggaagagatttgaaggagctg
ctgctgagtatgagcagaaagatctggtccaatagggaggagtttcagtg
ctcccccacctactccaccttatgcagatagaaagcattggcaatggtca
ctctttttgcactctagagggttgcgtaaaatatgtcagctttctgtttt
tcagatcagctcacagcgatatatggagccatatcgcataaccaagtgaa
ggattagccagagtcagtaggactaagtcaatgctcttttactcagtccc
caattggattgaga
gaattcagaggacaacttgtggaagctggttctcttttcctactatgtgg
gtcttatggatcgaacccaggctgccaggcttggtagcaagtacctttac
ccacagagtcagcccactggaccaaatacagagatggtttagagcatgga
gcaggaaggatgcagggtgcacataagcatcgctcctgtgaagaactgac
tgctgattcatcctttactgtgtcgttctgatttctataggaagccctat
agacagctaatgtgtgtgtatgttatacatgtgtgtgcagatgaacaccc
acccgtgcaaaggccaaacaggaataccggtgttcacaaggttccctttt
ctctatcactgaacccggccggggcttaccattttagctaggctgcctgc
tcagcaagcttctgggactcacttgtcccctagttctagggtttcgggca
tgctcagccactcctggcttttccatgggtgttggtatcagaactcaggt
tctcatgatgggtatcaagtgttcttcaacactgagccattttcccagtt
cttgctttgacaattcttaatcacctatctgagcctcagatctcattaga
ggttaaaaaaaaaagacccgttttatagaattgtgtgaataagcctgatg
gatgagcacagctggggcctgatgtccagcaagcaatcgatagatgcttg
gcttttatccttattctctgcaaagacaggcagtcctttagtacaccaag
tagcaactgggcagaggaaatacctggtgcatggggccggggatgggggt
cctggatgcctgcactccccatgcgccaggccctgtaaagtgcaaggtac
ctgcactaactccaacatttcactgaagctgatgtagccattgctgttct
taggttcagacatgctgaaggcccaacttcagcttctgttccagcttgcc
cccgagaggtcaagcctcagagccattgatgattacctcggaagttgata
gtgccgtcacctgtgggtgtcaaaccgtgtggagacaatgttcagtgacc
ttgtagtgtctctgtaggggtggagttgccctagatcctaaacttgtcca
cagtccaggtgaccagatggggacacagtcaatgagggcagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_18566518_18567645
seq2: B6Ng01-209H15.g_63_1205 (reverse)

seq1  GACT-CCCTCAATGACTGT---CCCA-CTGGTCACCT-GACTGTGGACAA  44
      |||| |||||| |||||||   |||| |||||||||| ||||||||||||
seq2  GACTGCCCTCATTGACTGTGTCCCCATCTGGTCACCTGGACTGTGGACAA  50

seq1  TTTTAAGATCTAGGCCAACTTCTTCCCCTACAGAGACACCTCCAAGTTCA  94
       |||| |||||||| |||| ||  |||||||||||||| || |||| |||
seq2  GTTTAGGATCTAGGGCAAC-TCCACCCCTACAGAGACA-CTACAAGGTCA  98

seq1  CTGAACA-TGTCTTCCACAC-GTTTGACACCAACA-GTGACGGCACTATC  141
      ||||||| |||| ||||||| |||||||||| ||| ||||||||||||||
seq2  CTGAACATTGTC-TCCACACGGTTTGACACCCACAGGTGACGGCACTATC  147

seq1  AACTTCCGA-GTATTCATC-ATTGCTCTGA-GCCTGACCTCTC-GGGGCA  187
      ||||||||| ||| ||||| || ||||||| || ||||||||| ||||||
seq2  AACTTCCGAGGTAATCATCAATGGCTCTGAGGCTTGACCTCTCGGGGGCA  197

seq1  AGCTGGAACAGAAGCTGAAG-TGGGCCTTCAGCATGTCTG-ACCTA--GA  233
      |||||||||||||||||||| ||||||||||||||||||| |||||   |
seq2  AGCTGGAACAGAAGCTGAAGTTGGGCCTTCAGCATGTCTGAACCTAAGAA  247

seq1  CAGCAATGGCTACATCAGCTTCAGTGAAATGTTGGAGTTAGTGCAGGTAC  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGGCTACATCAGCTTCAGTGAAATGTTGGAGTTAGTGCAGGTAC  297

seq1  C-TGCACTTTACAGGGCCTGGCGCATGGGGAGTGCAGGCATCCAGGACCC  332
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTTTACAGGGCCTGGCGCATGGGGAGTGCAGGCATCCAGGACCC  347

seq1  CCATCCCCGGCCCCATGCACCAGGTATTTCCTCTGCCCAGTTGCTACTTG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCGGCCCCATGCACCAGGTATTTCCTCTGCCCAGTTGCTACTTG  397

seq1  GTGTACTAAAGGACTGCCTGTCTTTGCAGAGAATAAGGATAAAAGCCAAG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTAAAGGACTGCCTGTCTTTGCAGAGAATAAGGATAAAAGCCAAG  447

seq1  CATCTATCGATTGCTTGCTGGACATCAGGCCCCAGCTGTGCTCATCCATC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCGATTGCTTGCTGGACATCAGGCCCCAGCTGTGCTCATCCATC  497

seq1  AGGCTTATTCACACAATTCTATAAAACGGGTCTTTTTTTTTTAACCTCTA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATTCACACAATTCTATAAAACGGGTCTTTTTTTTTTAACCTCTA  547

seq1  ATGAGATCTGAGGCTCAGATAGGTGATTAAGAATTGTCAAAGCAAGAACT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCTGAGGCTCAGATAGGTGATTAAGAATTGTCAAAGCAAGAACT  597

seq1  GGGAAAATGGCTCAGTGTTGAAGAACACTTGATACCCATCATGAGAACCT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATGGCTCAGTGTTGAAGAACACTTGATACCCATCATGAGAACCT  647

seq1  GAGTTCTGATACCAACACCCATGGAAAAGCCAGGAGTGGCTGAGCATGCC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGATACCAACACCCATGGAAAAGCCAGGAGTGGCTGAGCATGCC  697

seq1  CGAAACCCTAGAACTAGGGGACAAGTGAGTCCCAGAAGCTTGCTGAGCAG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACCCTAGAACTAGGGGACAAGTGAGTCCCAGAAGCTTGCTGAGCAG  747

seq1  GCAGCCTAGCTAAAATGGTAAGCCCCGGCCGGGTTCAGTGATAGAGAAAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAGCTAAAATGGTAAGCCCCGGCCGGGTTCAGTGATAGAGAAAA  797

seq1  GGGAACCTTGTGAACACCGGTATTCCTGTTTGGCCTTTGCACGGGTGGGT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTGTGAACACCGGTATTCCTGTTTGGCCTTTGCACGGGTGGGT  847

seq1  GTTCATCTGCACACACATGTATAACATACACACACATTAGCTGTCTATAG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTGCACACACATGTATAACATACACACACATTAGCTGTCTATAG  897

seq1  GGCTTCCTATAGAAATCAGAACGACACAGTAAAGGATGAATCAGCAGTCA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTATAGAAATCAGAACGACACAGTAAAGGATGAATCAGCAGTCA  947

seq1  GTTCTTCACAGGAGCGATGCTTATGTGCACCCTGCATCCTTCCTGCTCCA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCACAGGAGCGATGCTTATGTGCACCCTGCATCCTTCCTGCTCCA  997

seq1  TGCTCTAAACCATCTCTGTATTTGGTCCAGTGGGCTGACTCTGTGGGTAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAACCATCTCTGTATTTGGTCCAGTGGGCTGACTCTGTGGGTAA  1047

seq1  AGGTACTTGCTACCAAGCCTGGCAGCCTGGGTTCGATCCATAAGACCCAC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTGCTACCAAGCCTGGCAGCCTGGGTTCGATCCATAAGACCCAC  1097

seq1  ATAGTAGGAAAAGAGAACCAGCTTCCACAAGTTGTCCTCTGAATTC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGAAAAGAGAACCAGCTTCCACAAGTTGTCCTCTGAATTC  1143