BAC Information

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BAC

Clone NameB6Ng01-209P13
Chromosome12 (Build37)
Map Location 11,234,584 - 11,235,761
singlet/doubletsinglet
Overlap genenone
Upstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1
Downstream gene5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209P13.bB6Ng01-209P13.g
ACCGA028439GA028440
length1,1941,178
definitionB6Ng01-209P13.b B6Ng01-209P13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacagcgaatgtgggcgcggctcccaacatctccccc
tttccttttaataagagcaaataggccacccatattaatgagagtggaga
tagaggtcaaatccccagtgtgtaggtaaaggagccatgtacaggattag
ctcttaggctcacaggcttttacccagagcaaccctgacctgctcccgtg
tcgttttgcctgggggaagggaactaggacactgaaccttcatgaaagat
gacatgtctccctagaataggctcatatatgccgcagagcctttccattg
cagtgcttagccgtgcaactctctcgggctgctgaagcacactcactcta
tcccgtgcaatgagactagcctcatgggatataagagctgagtggccagc
gacctattgcctaagcatagatatatcaggggaagctccatgttctagtc
ctgcaagcgcctgggcaataaccaccttgtctctcctagtttgggcctta
agcttacagaccaatcaaagaagcaacactaatccacagcaaagtgtatc
tccaaataatattaatcccacccattttttaaagaaagaaaatgctgagg
agatccaattgggtaatcctttggtcagggacaggtccaagcgcgtggag
ttgacctgaagtctcaattcccgaagggatctgttcaaattcagccatcc
aattctgtaacatatactgaaaaagactttttgacaaattagctgcccta
gtaaatttaacatactgaatggaagtaacacacaatcccggaaacttttg
ttcacatcccagctgagttatttgtcataatacatctagttgtatctgga
caagatctatgagttgattaccagcatgagactctctgtatctgacatta
gctgagctgtcatctatgactgtaggtcactgagctgaacagtgttaatg
ggtcaagtcgtctgactgtcaagaacggctaggctgtctgattaggccac
agttcctagttagggtgcatataaagcacggagaaaattacctg
gaattccagtccagtgtatttgttagattcttttgtgtgggaaaaaaaaa
aaaagctagatatgttttcatgagaaagtgaagctagtaagaaaagaaaa
caggccagatgggaaaacaaggacgtagtttcattgcttctgactcacag
tgagtattacactggaggcaatgcaccaacatctggctcaaaatgcacac
caagtgtttcctgacccctttactctcagaggtctcctctgtggggctca
cctaaagatcttcaccttctccagcaatcagtcaccaccagtgtggttcc
taagggaagaagaacaactgttttgggaaaactcttagggtagagcttct
ctgaagcttcgtgcatttgtaggttcagacctgctcagaatggaagtcac
cagggggaagattgtgctcatctaagcgttcctcaggggaccacagctgc
ccttcttgaggggtgctgcttatcggattccagtgaaacctagtagaggg
gtgcttgcttaagagctaggtcaccaactagtgaaagtgacataaggtca
acattgaaacagtcatccattcatcaatctgtccatccacttactatcca
tgcacccaccatctatccatccatttaccattcatccatctatccattta
cccattcatcatctctccttccttgtttccatccattcatccatctatcc
attcatccatcttccatccatcttctatctatcccatcgatatatgcatt
cattcaccatctctcccattcatccatccaccatccatccatccattcca
cagcccagtcagcgcatatactacccccaagaattatgcagattgtaaga
gttttggtaagtccaggcatggtggtgcacacctttaatcccagcacctg
gaaagcaaaggagactctgaattcaaggctagccttgcctacttagagga
gtctcaggacagccaagggctattgcacaggaaccctgtcccaatcctcc
ctcctgctccaggaaccattaggattaggataggaatagtctcttctatt
gtgatggatcacattctattttctatttgccaagaatccatgtgcaatta
cctcttactgcccatattctaggtccaattgaatgaactattatccacat
acacaacttggcctcacaaaatgatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11234584_11235761
seq2: B6Ng01-209P13.g_68_1245 (reverse)

seq1  TATATCATTTTGTGAG--CAAGTGTGGGTATGTGATAAATAGTTCATTCA  48
      ||||||||||||||||  ||||| || |||||||   |||||||||||| 
seq2  TATATCATTTTGTGAGGCCAAGT-TGTGTATGTGGATAATAGTTCATTC-  48

seq1  AATTTGACCTAGAAATATGGGCAGTTAAGAAGTTAATTGCACATGATTTT  98
      |||| ||||||| ||||||||||| |||| || ||||||||||||   ||
seq2  AATTGGACCTAG-AATATGGGCAG-TAAG-AGGTAATTGCACATG-GATT  94

seq1  CTTTGCAAATAGAAAATAGATTGTGATTCCATCAC-ATAGAAGAGACTA-  146
      ||| |||||||||||||||| ||||| |||||||| ||||||||||||| 
seq2  CTTGGCAAATAGAAAATAGAATGTGA-TCCATCACAATAGAAGAGACTAT  143

seq1  TCTAATCCTTATCCTAATGGTTCTTGGAGCAGGGAAGGGAGGATTGGGAC  196
      ||  ||||| ||||||||||||| |||||||||  |||||||||||||||
seq2  TCCTATCCTAATCCTAATGGTTCCTGGAGCAGG--AGGGAGGATTGGGAC  191

seq1  AGGGTTTCTGTGC-ATAGCCC-TGGCTGTCCTGAGACT-CTCTAAGTAGG  243
      |||||| |||||| ||||||| |||||||||||||||| |||||||||||
seq2  AGGGTTCCTGTGCAATAGCCCTTGGCTGTCCTGAGACTCCTCTAAGTAGG  241

seq1  CAAGGCTAGCCTTGAATTCAGAGTCTCCTTTGCTTTCCAGGTGCTGGGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTAGCCTTGAATTCAGAGTCTCCTTTGCTTTCCAGGTGCTGGGAT  291

seq1  TAAAGGTGTGCACCACCATGCCTGGACTTACCAAAACTCTTACAATCTGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTGCACCACCATGCCTGGACTTACCAAAACTCTTACAATCTGC  341

seq1  ATAATTCTT-GGGGTAGTATATGCGCTGACT-GGCTGTGGAATGGATGGA  391
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  ATAATTCTTGGGGGTAGTATATGCGCTGACTGGGCTGTGGAATGGATGGA  391

seq1  TGGATGGTGGATGGATGAATGGGAGAGATGGTGAATGAATGCATATATCG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTGGATGGATGAATGGGAGAGATGGTGAATGAATGCATATATCG  441

seq1  ATGGGATAGATAGAAGATGGATGGAAGATGGATGAATGGATAGATGGATG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATAGATAGAAGATGGATGGAAGATGGATGAATGGATAGATGGATG  491

seq1  AATGGATGGAAACAAGGAAGGAGAGATGATGAATGGGTAAATGGATAGAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGGAAACAAGGAAGGAGAGATGATGAATGGGTAAATGGATAGAT  541

seq1  GGATGAATGGTAAATGGATGGATAGATGGTGGGTGCATGGATAGTAAGTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATGGTAAATGGATGGATAGATGGTGGGTGCATGGATAGTAAGTG  591

seq1  GATGGACAGATTGATGAATGGATGACTGTTTCAATGTTGACCTTATGTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACAGATTGATGAATGGATGACTGTTTCAATGTTGACCTTATGTCA  641

seq1  CTTTCACTAGTTGGTGACCTAGCTCTTAAGCAAGCACCCCTCTACTAGGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTAGTTGGTGACCTAGCTCTTAAGCAAGCACCCCTCTACTAGGT  691

seq1  TTCACTGGAATCCGATAAGCAGCACCCCTCAAGAAGGGCAGCTGTGGTCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGAATCCGATAAGCAGCACCCCTCAAGAAGGGCAGCTGTGGTCC  741

seq1  CCTGAGGAACGCTTAGATGAGCACAATCTTCCCCCTGGTGACTTCCATTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAACGCTTAGATGAGCACAATCTTCCCCCTGGTGACTTCCATTC  791

seq1  TGAGCAGGTCTGAACCTACAAATGCACGAAGCTTCAGAGAAGCTCTACCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGTCTGAACCTACAAATGCACGAAGCTTCAGAGAAGCTCTACCC  841

seq1  TAAGAGTTTTCCCAAAACAGTTGTTCTTCTTCCCTTAGGAACCACACTGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAGAGTTTTCCCAAAACAGTTGTTCTTCTTCCCTTAGGAACCACACTGG  891

seq1  TGGTGACTGATTGCTGGAGAAGGTGAAGATCTTTAGGTGAGCCCCACAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTGATTGCTGGAGAAGGTGAAGATCTTTAGGTGAGCCCCACAGA  941

seq1  GGAGACCTCTGAGAGTAAAGGGGTCAGGAAACACTTGGTGTGCATTTTGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTCTGAGAGTAAAGGGGTCAGGAAACACTTGGTGTGCATTTTGA  991

seq1  GCCAGATGTTGGTGCATTGCCTCCAGTGTAATACTCACTGTGAGTCAGAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGTTGGTGCATTGCCTCCAGTGTAATACTCACTGTGAGTCAGAA  1041

seq1  GCAATGAAACTACGTCCTTGTTTTCCCATCTGGCCTGTTTTCTTTTCTTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAACTACGTCCTTGTTTTCCCATCTGGCCTGTTTTCTTTTCTTA  1091

seq1  CTAGCTTCACTTTCTCATGAAAACATATCTAGCTTTTTTTTTTTTTCCCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCACTTTCTCATGAAAACATATCTAGCTTTTTTTTTTTTTCCCA  1141

seq1  CACAAAAGAATCTAACAAATACACTGGACTGGAATTC  1178
      |||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAATCTAACAAATACACTGGACTGGAATTC  1178