BAC Information

Click to search

BAC

Clone NameB6Ng01-210C23
Chromosome12 (Build37)
Map Location 115,502,885 - 115,649,973
singlet/doubletdoublet
Overlap geneIgh, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398
Upstream geneGm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457
Downstream geneEG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210C23.bB6Ng01-210C23.g
ACCGA028591GA028592
length1,2021,127
definitionB6Ng01-210C23.b B6Ng01-210C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,502,885 - 115,504,103)(115,648,847 - 115,649,973)
sequence
gaattccattgatgaattttttctaaggtctacatgagtcattatagaaa
atgaagacaaaggtgccagtgaatctgtgaggaaagtgacagttttattt
atctatgttcaaagaacattcctggtatttgtggttatttccttaatttc
tgcagcaaaggcaaagttttaccagtcagctttcacctactaaatatgta
cttatatttttaacaacacttaggacatacgtggactatattgttttata
aatggactatattcctttatattctttcagttactccttgtttatgctag
actggtgaaatggggtcacctgtttaatcacttaactagaaagtgccaaa
accatctgtttgaggagtgaatgcatttcctgcagtctggtgaggtaagc
tgttccttgcagcaccaggatgtcagaaaaaagcaagtcccttccactga
aatccatagttagaacttaccgttagtcattgcagagaagaaagtataaa
tccttgagaaggacaacccccttttaatatatgatgccctgcagctttaa
tgcatacaaactgtgaatctctttcttgcgaagctaacaaatctctggca
caaaggaaggcagcctacaactgagctgattgtggaatttaatctgttat
actctattcagtaatgccatttccaaacaaatgttctgaccatatcatat
tctgaaatgtattctcagcactatgctgaaggtctcataatgcacctata
agaggtttttgccaggtgtgtctggaatccatggcatgggtttcaatcat
caggggaattcaataattccttctcccaaactagagtggttttaaagcta
tttgttgattttatatttcctcgggatgagatcttggtgcctaccaggga
gtcacacctcccttgttaatgttcttactaggtaggaggatcaccacagc
ctgactttctctatctccaggaatcttattagtaggtattacacagctct
gtcagggtgtgaaactggctctcaggctgcaatactgtctcattcatagc
ctattggcattatttcagttacatattctctagttgacttgtcaccaggt
cacttgtgcatcttcgaaaattgagcagaaggagcctctgggtactgttc
cgcttggtgctggtagtagccttgcctagctttggtcagtttctcagatg
aa
gaattcatgaagcaatcaccagggtctgagctctgtcaaactctgctagg
atgtacagggtattgttaaggattgggtttttaaactaatctctagtgaa
ataattacagacactgtcagcacagaatacaaacttgtataagagtatga
cattgagacaggatataggtgtgctgccttcaattctacttctttaggga
aagaatttttcttcagagctgcaatatgtacacaatctgtttctcactgg
acctagatcatttctcaagtgtgagaacctcacactgagaactgattaga
gtgtctttaaacatacatgtacatttatttctcctatgggatgtattctc
ctagtccatcattatccttccttatcctctaaacctttaccacaagatca
catgacactcaggaagggagtcttcaccaggaaaagttggatagtttttt
tttttttttggtcctctaaggtccaatccattcctctgtgaaatgtatag
tatgtcaacatcaccatggattctcattttccaatataaaccacagcatc
agagtagaatttaagagaattcctttacctgtaaatttgggggaactgac
aaaagaaagactttgcttagtataaatgttgagttgttagatttgaattg
tctggacaaatgccagtatcatggtatcattttagatgggaaaacataga
tttctcaaggatattgaaaatttatgtccttcacagaattccaccttatg
cctgccctggtgaatcagtattcagaagagttatacacaatatttcatgc
atacaagttattcctgagtgactatagtattgcctaccaaacattttcgt
gccgcatcatcataggagtgagttaaagaaaatgaagtcatgtatcagct
tggtaaaaacaaaaggtagaacaattttctactggggatattatgcctat
gacaattcataaaatagctgttgacacgaccaacctgaaagggaaatatt
taaataaatagctgtgcttatcctggagtaacaggttctgtagggcaaca
gatggctctaacctcattagaagtttggtcatcctagtactacacaaaag
tccagggagaaaccattctactatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115502885_115504103
seq2: B6Ng01-210C23.b_50_1251

seq1  GAATTCCATTGATGAATTTTTTCTAAGGTCTACATGAGTCATTATAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGATGAATTTTTTCTAAGGTCTACATGAGTCATTATAGAAA  50

seq1  ATGAAGACAAAGGTGCCAGTGAATCTGTGAGGAAAGTGACAGTTTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACAAAGGTGCCAGTGAATCTGTGAGGAAAGTGACAGTTTTATTT  100

seq1  ATCTATGTTCAAAGAACATTCCTGGTATTTGTGGTTATTTCCTTAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTTCAAAGAACATTCCTGGTATTTGTGGTTATTTCCTTAATTTC  150

seq1  TGCAGCAAAGGCAAAGTTTTACCAGTCAGCTTTCACCTACTAAATATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAAGGCAAAGTTTTACCAGTCAGCTTTCACCTACTAAATATGTA  200

seq1  CTTATATTTTTAACAACACTTAGGACATACGTGGACTATATTGTTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTTTAACAACACTTAGGACATACGTGGACTATATTGTTTTATA  250

seq1  AATGGACTATATTCCTTTATATTCTTTCAGTTACTCCTTGTTTATGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTATATTCCTTTATATTCTTTCAGTTACTCCTTGTTTATGCTAG  300

seq1  ACTGGTGAAATGGGGTCACCTGTTTAATCACTTAACTAGAAAGTGCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGAAATGGGGTCACCTGTTTAATCACTTAACTAGAAAGTGCCAAA  350

seq1  ACCATCTGTTTGAGGAGTGAATGCATTTCCTGCAGTCTGGTGAGGTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTTTGAGGAGTGAATGCATTTCCTGCAGTCTGGTGAGGTAAGC  400

seq1  TGTTCCTTGCAGCACCAGGATGTCAGAAAAAAGCAAGTCCCTTCCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTGCAGCACCAGGATGTCAGAAAAAAGCAAGTCCCTTCCACTGA  450

seq1  AATCCATAGTTAGAACTTACCGTTAGTCATTGCAGAGAAGAAAGTATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATAGTTAGAACTTACCGTTAGTCATTGCAGAGAAGAAAGTATAAA  500

seq1  TCCTTGAGAAGGACAACCCCCTTTTAATATATGATGCCCTGCAGCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGAAGGACAACCCCCTTTTAATATATGATGCCCTGCAGCTTTAA  550

seq1  TGCATACAAACTGTGAATCTCTTTCTTGCGAAGCTAACAAATCTCTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAAACTGTGAATCTCTTTCTTGCGAAGCTAACAAATCTCTGGCA  600

seq1  CAAAGGAAGGCAGCCTACAACTGAGCTGATTGTGGAATTTAATCTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAAGGCAGCCTACAACTGAGCTGATTGTGGAATTTAATCTGTTAT  650

seq1  ACTCTATTCAGTAATGCCATTTCCAAACAAATGTTCTGACCATATCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTCAGTAATGCCATTTCCAAACAAATGTTCTGACCATATCATAT  700

seq1  TCTGAAATGTATTCTCAGCACTATGCTGAAGGTCTCATAATGCACCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATGTATTCTCAGCACTATGCTGAAGGTCTCATAATGCACCTATA  750

seq1  AGAGGTTTTTGCCAGGTGTGTCTGGAATCCATGGCATGGGTTTCAATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTTTGCCAGGTGTGTCTGGAATCCATGGCATGGGTTTCAATCAT  800

seq1  CAGGGGAATTCAATAATTCCTTCTCCCAAACTAGAGTGGTTTTAAAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAATTCAATAATTCCTTCTCCCAAACTAGAGTGGTTTTAAAGCTA  850

seq1  TTTGTTGATTTTATATTTCCTCGGGATGAGATCTTGGTGCCTACCAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATTTTATATTTCCTCGGGATGAGATCTTGGTGCCTACCAGGGA  900

seq1  GTCACACCTCCCTTGTTAATGTTCTTACTAGGTAGGAGGATCAACCACAG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCACACCTCCCTTGTTAATGTTCTTACTAGGTAGGAGGATC-ACCACAG  949

seq1  CCTGACTTTCTCTATCTCCAGGGAATCTTATTAGTAGGTATTACACAGCT  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTGACTTTCTCTATCTCCA-GGAATCTTATTAGTAGGTATTACACAGCT  998

seq1  CTGTCAGGGTTGTTGAAACTGGCTCTCAGGGCTGCAATTACTTGTTCTCA  1050
      ||||||||||   ||||||||||||||| |||||||| ||||   |||||
seq2  CTGTCAGGGT--GTGAAACTGGCTCTCA-GGCTGCAA-TACT--GTCTCA  1042

seq1  TTCATAGCCTATTGGCATAATTTCAGTTACCATATTCTCTTAAGGTTGAC  1100
      |||||||||||||||||| |||||||||| ||||||||||    ||||||
seq2  TTCATAGCCTATTGGCATTATTTCAGTTA-CATATTCTCT---AGTTGAC  1088

seq1  TTGTCACAAGGGCACTTGTTGCATCTTCGAAAATTGAGCAGGAAGAGCCT  1150
      ||||||| ||| |||||| |||||||||||||||||||||| | ||||||
seq2  TTGTCACCAGGTCACTTG-TGCATCTTCGAAAATTGAGCAGAAGGAGCCT  1137

seq1  CCTGGTGTACTG-TCCGC-TGGTGCTGGGTAGTAAGCTGTGCTAGCTTTT  1198
       |||| |||||| ||||| ||||||| |||||||  ||   |||||||| 
seq2  -CTGG-GTACTGTTCCGCTTGGTGCT-GGTAGTAGCCTTGCCTAGCTTTG  1184

seq1  GTGCAGGTTTCTCAGGATGAA  1219
      || || |||||||| ||||||
seq2  GT-CA-GTTTCTCA-GATGAA  1202

seq1: chr12_115648847_115649973
seq2: B6Ng01-210C23.g_67_1193 (reverse)

seq1  GGCATAGTAG-ATGG--TCTCCTGGGACTTTTGTGTAGTTAACTAGGATG  47
      |||||||||| ||||  |||||  |||||||||||||||  |||||||||
seq2  GGCATAGTAGAATGGTTTCTCCCTGGACTTTTGTGTAGT--ACTAGGATG  48

seq1  ACCAAAC-TCTAATGGAGTTAGAAACCATCCTTGTTGGCCCCTAACAGAA  96
      ||||||| |||||||  ||||| | |||||  |||||  |||| ||||||
seq2  ACCAAACTTCTAATGAGGTTAG-AGCCATC--TGTTG--CCCT-ACAGAA  92

seq1  CCTGTTACT-CAGGATAAGCACAGCTAATTTATTTAAATATTT-CCTTTC  144
      ||||||||| |||||||||||||||| |||||||||||||||| ||||||
seq2  CCTGTTACTCCAGGATAAGCACAGCT-ATTTATTTAAATATTTCCCTTTC  141

seq1  AGGTTGGTCGTGTCAACAGCTA-TTTATGAATTGTCATAGGCATAATAT-  192
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  AGGTTGGTCGTGTCAACAGCTATTTTATGAATTGTCATAGGCATAATATC  191

seq1  CCCAGTAG-AAATTGTTCTACCTTTTGTTTTTACCAAGCTGATACATGAC  241
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGAAAATTGTTCTACCTTTTGTTTTTACCAAGCTGATACATGAC  241

seq1  TTCATTTTCTTTAACTCACTCCTATGATGATGCGGCACGAAAATGTTTGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTTTAACTCACTCCTATGATGATGCGGCACGAAAATGTTTGG  291

seq1  TAGGCAATACTATAGTCACTCAGGAATAACTTGTATGCATGAAATATTGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAATACTATAGTCACTCAGGAATAACTTGTATGCATGAAATATTGT  341

seq1  GTATAACTCTTCTGAATACTGATTCACCAGGGCAGGCATAAGGTGGAATT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACTCTTCTGAATACTGATTCACCAGGGCAGGCATAAGGTGGAATT  391

seq1  CTGTGAAGGACATAAATTTTCAATATCCTTGAGAAATCTATGTTTTCCCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGGACATAAATTTTCAATATCCTTGAGAAATCTATGTTTTCCCA  441

seq1  TCTAAAATGATACCATGATACTGGCATTTGTCCAGACAATTCAAATCTAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGATACCATGATACTGGCATTTGTCCAGACAATTCAAATCTAA  491

seq1  CAACTCAACATTTATACTAAGCAAAGTCTTTCTTTTGTCAGTTCCCCCAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAACATTTATACTAAGCAAAGTCTTTCTTTTGTCAGTTCCCCCAA  541

seq1  ATTTACAGGTAAAGGAATTCTCTTAAATTCTACTCTGATGCTGTGGTTTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGGTAAAGGAATTCTCTTAAATTCTACTCTGATGCTGTGGTTTA  591

seq1  TATTGGAAAATGAGAATCCATGGTGATGTTGACATACTATACATTTCACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAAAATGAGAATCCATGGTGATGTTGACATACTATACATTTCACA  641

seq1  GAGGAATGGATTGGACCTTAGAGGACCAAAAAAAAAAAAAAACTATCCAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGGATTGGACCTTAGAGGACCAAAAAAAAAAAAAAACTATCCAA  691

seq1  CTTTTCCTGGTGAAGACTCCCTTCCTGAGTGTCATGTGATCTTGTGGTAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTGGTGAAGACTCCCTTCCTGAGTGTCATGTGATCTTGTGGTAA  741

seq1  AGGTTTAGAGGATAAGGAAGGATAATGATGGACTAGGAGAATACATCCCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGAGGATAAGGAAGGATAATGATGGACTAGGAGAATACATCCCA  791

seq1  TAGGAGAAATAAATGTACATGTATGTTTAAAGACACTCTAATCAGTTCTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAATAAATGTACATGTATGTTTAAAGACACTCTAATCAGTTCTC  841

seq1  AGTGTGAGGTTCTCACACTTGAGAAATGATCTAGGTCCAGTGAGAAACAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGGTTCTCACACTTGAGAAATGATCTAGGTCCAGTGAGAAACAG  891

seq1  ATTGTGTACATATTGCAGCTCTGAAGAAAAATTCTTTCCCTAAAGAAGTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTACATATTGCAGCTCTGAAGAAAAATTCTTTCCCTAAAGAAGTA  941

seq1  GAATTGAAGGCAGCACACCTATATCCTGTCTCAATGTCATACTCTTATAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAAGGCAGCACACCTATATCCTGTCTCAATGTCATACTCTTATAC  991

seq1  AAGTTTGTATTCTGTGCTGACAGTGTCTGTAATTATTTCACTAGAGATTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTATTCTGTGCTGACAGTGTCTGTAATTATTTCACTAGAGATTA  1041

seq1  GTTTAAAAACCCAATCCTTAACAATACCCTGTACATCCTAGCAGAGTTTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAACCCAATCCTTAACAATACCCTGTACATCCTAGCAGAGTTTG  1091

seq1  ACAGAGCTCAGACCCTGGTGATTGCTTCATGAATTC  1127
      ||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTCAGACCCTGGTGATTGCTTCATGAATTC  1127