BAC Information

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BAC

Clone NameB6Ng01-211E01
Chromosome12 (Build37)
Map Location 112,196,454 - 112,373,691
singlet/doubletdoublet
Overlap gene4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1
Upstream geneLOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik
Downstream gene4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211E01.bB6Ng01-211E01.g
ACCGA029373GA029374
length1,012945
definitionB6Ng01-211E01.b B6Ng01-211E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,196,454 - 112,197,456)(112,372,757 - 112,373,691)
sequence
gaattcaacttgcctttttaagttttggttttttttttttatgtttatgt
gtctatgtgggtatctaccatgtatgtgcccaaagaggtctaaaggaggc
gttagatctcccagtgctccagttactggtggttgtgagctgcccagtat
ggttattgaagttccaactcaggttctgagcatgtctttatgagagttgt
cgttgtcgttgttgttatagttgttcaatttttattttctttatctattt
tgtattattactattgtgagtgtatagtggatatgtgcgtgctgtggtga
gctcagtggacatgtgcaaatcagagacggctttcagctggtggtctcct
gctgttgtgggctccagctgaggagtgcaggtcatcaggtttgtgcagag
cgcagttacctgccgagccttctctccagtcacgttgtgactgacccagg
ctcttacctactctgtctattctagtcttgactcagattgagcagtttct
ggtttttagtaatttgttcatctgtgtcatctaacttattggcatccagt
ttccatatggtattcttatatatggtattctcttccttttatttctgtat
gattgtaggaatatcctcttttatttctgattttaataatttattttttt
ctttccttttttgcatgatatgtgtgttctttgatgcacatgaatatgga
cactgagtatgaagaagtccagcgtccctcttcctcctccttgtttgagc
aggtgtgcagcaggccagctggcctggggaatttccagggattctcctgt
ctcagcctcccatctttccatggagcgctggaattacagattgcgcacta
ccgctcctgactgcacgtgggctctgagattgaactgtggtcaccgtgct
tacgcgccaggtgccctgactcactaagcacctcctgctccgcggttttt
ctcaagctcatcatagtcttttgtccacttttattcttcctttttaaaaa
taccatctttgg
gaattcaatacccttttagtaagaacctctctgcttaaattgatcagaat
tctgcaaatgacagagtgtgtgtgcccagctccagtgtgcggcgggctct
gttcccgggggcagcagcctgaggtccgaggctcagcctaccaggaaggc
agagccagggtggaagctaattctcttagtcccaggaagcaggagagaga
ggccattgggaagccaaagacagaagaagggttgctgtcagcgtggccta
ccccatccattctcagtgaggcgatagcagatgctgcccatctgaatggt
ttagaatggggaaaaatgggagaattagccaacctagtgtttattggcag
cgatcttgctgcagttcctggccacacatccatggcgattagttcttgag
tagcactaggagagtggagggggtggtcccaggcctggaggacaaaggcc
agctaggaacggaaacggtatcaatgtccagtcgagtctggatcaggagc
cagagagctgcggcagaagggacaggaagatctagcttgaagctgcatgg
cagagagcagaaggaatgcggtgtgggtgagaacgtgattggatgctcag
accggggagctggctggcgctcctgaagtgtcagaactctcgagcccctg
ggagcagcaactcccagcagcacttgcggccaccctcagggagatggtct
atgaaagtctgggcatgcagaggggacgcttggactgtagctttaatccc
acagagaacttcagagggcaggagcctcctagtacatggctccacacggt
cggcacccatggctcaagggttgcccaagaactagatttcagggaggcca
tcggggcaggggtttaagaaatacacccagggagggtagagcaatccctc
ctgaaggtcacagcccagggtctttcagatagctcccatctcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112196454_112197456
seq2: B6Ng01-211E01.b_46_1057

seq1  GAATTCAACTTGCCTTTTTAAGTTTTGGTTTTTTTTTTTTATGTTTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGCCTTTTTAAGTTTTGGTTTTTTTTTTTTATGTTTATGT  50

seq1  GTCTATGTGGGTATCTACCATGTATGTGCCCAAAGAGGTCTAAAGGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTGGGTATCTACCATGTATGTGCCCAAAGAGGTCTAAAGGAGGC  100

seq1  GTTAGATCTCCCAGTGCTCCAGTTACTGGTGGTTGTGAGCTGCCCAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATCTCCCAGTGCTCCAGTTACTGGTGGTTGTGAGCTGCCCAGTAT  150

seq1  GGTTATTGAAGTTCCAACTCAGGTTCTGAGCATGTCTTTATGAGAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGAAGTTCCAACTCAGGTTCTGAGCATGTCTTTATGAGAGTTGT  200

seq1  CGTTGTCGTTGTTGTTATAGTTGTTCAATTTTTATTTTCTTTATCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTCGTTGTTGTTATAGTTGTTCAATTTTTATTTTCTTTATCTATTT  250

seq1  TGTATTATTACTATTGTGAGTGTATAGTGGATATGTGCGTGCTGTGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATTACTATTGTGAGTGTATAGTGGATATGTGCGTGCTGTGGTGA  300

seq1  GCTCAGTGGACATGTGCAAATCAGAGACGGCTTTCAGCTGGTGGTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGACATGTGCAAATCAGAGACGGCTTTCAGCTGGTGGTCTCCT  350

seq1  GCTGTTGTGGGCTCCAGCTGAGGAGTGCAGGTCATCAGGTTTGTGCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTGGGCTCCAGCTGAGGAGTGCAGGTCATCAGGTTTGTGCAGAG  400

seq1  CGCAGTTACCTGCCGAGCCTTCTCTCCAGTCACGTTGTGACTGACCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTACCTGCCGAGCCTTCTCTCCAGTCACGTTGTGACTGACCCAGG  450

seq1  CTCTTACCTACTCTGTCTATTCTAGTCTTGACTCAGATTGAGCAGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCTACTCTGTCTATTCTAGTCTTGACTCAGATTGAGCAGTTTCT  500

seq1  GGTTTTTAGTAATTTGTTCATCTGTGTCATCTAACTTATTGGCATCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAGTAATTTGTTCATCTGTGTCATCTAACTTATTGGCATCCAGT  550

seq1  TTCCATATGGTATTCTTATATATGGTATTCTCTTCCTTTTATTTCTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATGGTATTCTTATATATGGTATTCTCTTCCTTTTATTTCTGTAT  600

seq1  GATTGTAGGAATATCCTCTTTTATTTCTGATTTTAATAATTTATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAGGAATATCCTCTTTTATTTCTGATTTTAATAATTTATTTTTTT  650

seq1  CTTTCCTTTTTTGCATGATATGTGTGTTCTTTGATGCACATGAATATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTTTGCATGATATGTGTGTTCTTTGATGCACATGAATATGGA  700

seq1  CACTGAGTATGAAGAAGTCCAGCGTCCCTCTTCCTCCTCCTTGTTTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTATGAAGAAGTCCAGCGTCCCTCTTCCTCCTCCTTGTTTGAGC  750

seq1  AGGTGTGCAGCAGGCCAGCTGGCCTGGGGAATTTCCAGGGATTCTCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCAGCAGGCCAGCTGGCCTGGGGAATTTCCAGGGATTCTCCTGT  800

seq1  CTCAGCCTCCCATCTTTCCATGGAGCGCTGGAATTACAGA-TGCGCACTA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCAGCCTCCCATCTTTCCATGGAGCGCTGGAATTACAGATTGCGCACTA  850

seq1  CCGCTCCTGACTGCACGTGGGCTCTGAGATTGAACTGTGGTCACCGTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCTGACTGCACGTGGGCTCTGAGATTGAACTGTGGTCACCGTGCT  900

seq1  TACGCG-CAGGTG-CCTGACTCACTAAGCCACCTCCTGCTCCGC-GTTTT  946
      |||||| |||||| |||||||||||||| ||||||||||||||| |||||
seq2  TACGCGCCAGGTGCCCTGACTCACTAAG-CACCTCCTGCTCCGCGGTTTT  949

seq1  TCTC-AGCTCATCATAGTC-TTTGTCCACTTT--ATCTTC--TTTTTAAA  990
      |||| |||||||||||||| ||||||||||||   |||||  |||| |||
seq2  TCTCAAGCTCATCATAGTCTTTTGTCCACTTTTATTCTTCCTTTTTAAAA  999

seq1  ATACCATCTTTGG  1003
      |||||||||||||
seq2  ATACCATCTTTGG  1012

seq1: chr12_112372757_112373691
seq2: B6Ng01-211E01.g_68_1012 (reverse)

seq1  CCTGAGCT-GGAGCTCTCTGAAAGACCTTGGACTGTGACCTCCA-GAAGG  48
      |||||| | |||||| ||||||||||| ||| ||||||||| || || ||
seq2  CCTGAGATGGGAGCTATCTGAAAGACCCTGGGCTGTGACCTTCAGGAGGG  50

seq1  ATTGCTCTACCCTCCCT-GGTGTA-TTCTT-AACCCCTGCCCCGATGGCC  95
      ||||||||||||||||| |||||| ||||| |||||||||||||||||||
seq2  ATTGCTCTACCCTCCCTGGGTGTATTTCTTAAACCCCTGCCCCGATGGCC  100

seq1  TCCCTGAAATCTAGTTCTTGGGC-ACCCTTGAGCCATGGGTGCCGACCGT  144
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCCTGAAATCTAGTTCTTGGGCAACCCTTGAGCCATGGGTGCCGACCGT  150

seq1  GTGGAGCCATGTACTAGGAGGCTCCTG-CCTCTGAAGTTCTCTGTGGGA-  192
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  GTGGAGCCATGTACTAGGAGGCTCCTGCCCTCTGAAGTTCTCTGTGGGAT  200

seq1  TAAAGCTACAGTCCAAGCGTCCCCTCTGCATGCCCAGAC-TTCATAGACC  241
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAGCTACAGTCCAAGCGTCCCCTCTGCATGCCCAGACTTTCATAGACC  250

seq1  ATCTCCCTGA-GGTGGCCGCAAGTGCTGCTGGGAGTTGCTGCTCCCAGGG  290
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTGAGGGTGGCCGCAAGTGCTGCTGGGAGTTGCTGCTCCCAGGG  300

seq1  GCTCGAGAGTTCTGACACTTCAGGAGCGCCAGCCAGCTCCCCGGTCTGAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGAGTTCTGACACTTCAGGAGCGCCAGCCAGCTCCCCGGTCTGAG  350

seq1  CATCCAATCACGTTCTCACCCACACCGCATTCCTTCTGCTCTCTGCCATG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATCACGTTCTCACCCACACCGCATTCCTTCTGCTCTCTGCCATG  400

seq1  CAGCTTCAAGCTAGATCTTCCTGTCCCTTCTGCCGCAGCTCTCTGGCTCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAAGCTAGATCTTCCTGTCCCTTCTGCCGCAGCTCTCTGGCTCC  450

seq1  TGATCCAGACTCGACTGGACATTGATACCGTTTCCGTTCCTAGCTGGCCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAGACTCGACTGGACATTGATACCGTTTCCGTTCCTAGCTGGCCT  500

seq1  TTGTCCTCCAGGCCTGGGACCACCCCCTCCACTCTCCTAGTGCTACTCAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCCAGGCCTGGGACCACCCCCTCCACTCTCCTAGTGCTACTCAA  550

seq1  GAACTAATCGCCATGGATGTGTGGCCAGGAACTGCAGCAAGATCGCTGCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAATCGCCATGGATGTGTGGCCAGGAACTGCAGCAAGATCGCTGCC  600

seq1  AATAAACACTAGGTTGGCTAATTCTCCCATTTTTCCCCATTCTAAACCAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACTAGGTTGGCTAATTCTCCCATTTTTCCCCATTCTAAACCAT  650

seq1  TCAGATGGGCAGCATCTGCTATCGCCTCACTGAGAATGGATGGGGTAGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGGCAGCATCTGCTATCGCCTCACTGAGAATGGATGGGGTAGGC  700

seq1  CACGCTGACAGCAACCCTTCTTCTGTCTTTGGCTTCCCAATGGCCTCTCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGACAGCAACCCTTCTTCTGTCTTTGGCTTCCCAATGGCCTCTCT  750

seq1  CTCCTGCTTCCTGGGACTAAGAGAATTAGCTTCCACCCTGGCTCTGCCTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTCCTGGGACTAAGAGAATTAGCTTCCACCCTGGCTCTGCCTT  800

seq1  CCTGGTAGGCTGAGCCTCGGACCTCAGGCTGCTGCCCCCGGGAACAGAGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGGCTGAGCCTCGGACCTCAGGCTGCTGCCCCCGGGAACAGAGC  850

seq1  CCGCCGCACACTGGAGCTGGGCACACACACTCTGTCATTTGCAGAATTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGCACACTGGAGCTGGGCACACACACTCTGTCATTTGCAGAATTCT  900

seq1  GATCAATTTAAGCAGAGAGGTTCTTACTAAAAGGGTATTGAATTC  935
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATTTAAGCAGAGAGGTTCTTACTAAAAGGGTATTGAATTC  945