BAC Information

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BAC

Clone NameB6Ng01-211G22
Chromosome12 (Build37)
Map Location 51,243,371 - 51,397,577
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm, LOC100039517, LOC636070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211G22.bB6Ng01-211G22.g
ACCGA029501GA029502
length1,1661,154
definitionB6Ng01-211G22.b B6Ng01-211G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,396,397 - 51,397,577)(51,243,371 - 51,244,271)
sequence
gaattcctgaaccagaatgtaatgtcaatatcacttcctgtgatcatgaa
tattcaagtataatttctaatctgtagggagggtttcagattttagaatg
tatctcatcaaacgtaataactgatcatatcccttctacaaaacagctga
attctcagtgaaaagaagcttgacaaaatggtgaacaatccagagcactg
atttactatgagacagataaatacaatccaagctgtacaaggacatgaag
acctcatttaaaaaaaaaaaaaatcttgccttctgtctactaccagttac
agcctcttggaggccccgcttctgttgctggaccaggcattttttagcct
ctggaagaggaatggttctcttcttatcctcatttgtgcttacctgatgg
cttttctcagtaaagacacgaaaatttgctctatttctaaactgtttcac
tgtactgaaacaggactatgaaaatacagctgttttccatatactggtaa
caaaaaatgcaatgaaatattattttaaggaagagttatcaaaaccgggg
tgccaatcactctgaggagcagagtaaaaattatttgcacttcaatattt
atatttattacaagaaaaaagtttctttttgtagaaagaaggtgcagaaa
agggcacagtattagctaaatattgtaccttagaacatcagtcatttccc
tctcaatagtacggaaagggtctaatttataagtttttccatctccctgt
tatgctggcttgtaagttctgacactgctactggtatgttaatgagaagc
tagcgttccattaagagaaaaccatatgctctgctgcctactgtgaaaga
gaaagcatgtaatgtggctgttgccttagcaacacattaattcattttgt
cagtgttgggcacagatcattttcatttataagaaaacaagtataatagt
ttaccacatctataattatttacagtgttttctgttacaaaacagtgaca
aaatgagtttaaaaaatagagttggtatatatcattaaaatatggaattt
gtggtaaaatttccctgtaaaatgaaaaaatgaagaatgtgtaaatttct
ttcacattctacctaacattttaacacaacctgttgctttagctatttgg
attatactataatgtg

gaattctggtctcagctcttacttagtctttatcatttccataagcctta
ttcttggctatttattctctttcagcactttgtccctaattttattgagt
aatttcttcctcttttctttaaactccattcattgttgaagcatattatt
gttctataaattctgtttaaattttgcgttatggagttcatataggttat
tctcattaacaaacatctctacaacaccggtaggttttaaagaaaagata
ttggcttaatctttcatattgctggtattttgcagtgatattttgacaca
ttgaaattctctgttacttctgagtttgctatgaacaaagtaggttgtgg
cgaaagacaggatgtaatgtgcaggaaggttgggcccaggccatggaaat
ggcttagatggaatgaaatcaggtgagcaaaggtgactagtctggtagac
tcctctcaagaatgtgatttatttttcaaggctgaagtttgaggatagat
ttagttgagtggaaagattggtcacggtatgggatagtcctatgagctgt
gacgtagatagggagcatcctggctgaagattagagctcctttttaatgg
aaagcacatgctaggctggtgccctagttgtgaggttcagtctagatctg
atgggttgcagaaaaggcaaggatagagatgtcagaggaactcaccaggc
tagacacaggaggagggtatagaaggtctaagcatcaggttgggtggctg
aatgctgtgtagaggtcctcattatccttgagaaaggatttctctttagt
tcatcagtttacctgtaagtgctaagattttacattcctgtgttgggtta
ctgatacaccactatgcctactatgtacatgggtactggagatctaaact
caggttcttcacaatgccttaaaactttatcgactgcaatctcccaattc
caattatttttcagacttcctatatatttgttttacctataatgtctaga
aattttttagtattgttcaaatgtaagtcttgaccacttgtatctttccc
caagccaaagccagtcctaaaagttttaaataactttgtatccacttttt
atggaattattttatagatatgttgagctgcattccagcatgcataggca
ttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51396397_51397577
seq2: B6Ng01-211G22.b_51_1216 (reverse)

seq1  CACATTATTAGTATAATACAAATATGCTAAAAAGCAAACAGTTTGGTGTT  50
      ||||||| ||||||||| |||||| |||  ||||| ||||| || |||||
seq2  CACATTA-TAGTATAATCCAAATA-GCT--AAAGC-AACAGGTT-GTGTT  44

seq1  AAAATGTTTTAAGTAGGATTGTGAAAAGAAATTTTACACCAATCTTCATT  100
      ||||||  ||| ||| || |||| ||||||| |||||| || ||||||||
seq2  AAAATG--TTAGGTA-GAATGTG-AAAGAAA-TTTACA-CATTCTTCATT  88

seq1  TTTTTTTCCATTTTTACAGGGAAATTTTTACCACAAATTCCATATTTTAA  150
      ||||    || ||||||||||||| |||||||||||||||||||||||||
seq2  TTTT----CA-TTTTACAGGGAAA-TTTTACCACAAATTCCATATTTTAA  132

seq1  TGATATTATACCAACTCTATTTTTTAAACTCATTTTGTCACTGTTTTGTA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATA-TATACCAACTCTATTTTTTAAACTCATTTTGTCACTGTTTTGTA  181

seq1  ACAG-AAACACTGTAAAT-ATTATAGATGTGGTAAACTATTATACTTGTT  248
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAGAAAACACTGTAAATAATTATAGATGTGGTAAACTATTATACTTGTT  231

seq1  TTCTTATAAATG-AAATGATCTGTG-CCAACACTGACAAAATGAATTAAT  296
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TTCTTATAAATGAAAATGATCTGTGCCCAACACTGACAAAATGAATTAAT  281

seq1  GTGTTGCTAAGGCAACAGCCACATTACATGCTTTCTCTTTCACAGTAGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTAAGGCAACAGCCACATTACATGCTTTCTCTTTCACAGTAGGC  331

seq1  AGCAGAGCATATGGTTTTCTCTTAATGGAACGCTAGCTTCTCATTAACAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCATATGGTTTTCTCTTAATGGAACGCTAGCTTCTCATTAACAT  381

seq1  ACCAGTAGCAGTGTCAGAACTTACAAGCCAGCATAACAGGGAGATGGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAGCAGTGTCAGAACTTACAAGCCAGCATAACAGGGAGATGGAAA  431

seq1  AACTTATAAATTAGACCCTTTCCGTACTATTGAGAGGGAAATGACTGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATAAATTAGACCCTTTCCGTACTATTGAGAGGGAAATGACTGATG  481

seq1  TTCTAAGGTACAATATTTAGCTAATACTGTGCCCTTTTCTGCACCTTCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGGTACAATATTTAGCTAATACTGTGCCCTTTTCTGCACCTTCTT  531

seq1  TCTACAAAAAGAAACTTTTTTCTTGTAATAAATATAAATATTGAAGTGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAAGAAACTTTTTTCTTGTAATAAATATAAATATTGAAGTGCA  581

seq1  AATAATTTTTACTCTGCTCCTCAGAGTGATTGGCACCCCGGTTTTGATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTACTCTGCTCCTCAGAGTGATTGGCACCCCGGTTTTGATAA  631

seq1  CTCTTCCTTAAAATAATATTTCATTGCATTTTTTGTTACCAGTATATGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTAAAATAATATTTCATTGCATTTTTTGTTACCAGTATATGGA  681

seq1  AAACAGCTGTATTTTCATAGTCCTGTTTCAGTACAGTGAAACAGTTTAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGTATTTTCATAGTCCTGTTTCAGTACAGTGAAACAGTTTAGA  731

seq1  AATAGAGCAAATTTTCGTGTCTTTACTGAGAAAAGCCATCAGGTAAGCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGCAAATTTTCGTGTCTTTACTGAGAAAAGCCATCAGGTAAGCAC  781

seq1  AAATGAGGATAAGAAGAGAACCATTCCTCTTCCAGAGGCTAAAAAATGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGATAAGAAGAGAACCATTCCTCTTCCAGAGGCTAAAAAATGCC  831

seq1  TGGTCCAGCAACAGAAGCGGGGCCTCCAAGAGGCTGTAACTGGTAGTAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGCAACAGAAGCGGGGCCTCCAAGAGGCTGTAACTGGTAGTAGA  881

seq1  CAGAAGGCAAGATTTTTTTTTTTTTTAAATGAGGTCTTCATGTCCTTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCAAGATTTTTTTTTTTTTTAAATGAGGTCTTCATGTCCTTGTA  931

seq1  CAGCTTGGATTGTATTTATCTGTCTCATAGTAAATCAGTGCTCTGGATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGATTGTATTTATCTGTCTCATAGTAAATCAGTGCTCTGGATTG  981

seq1  TTCACCATTTTGTCAAGCTTCTTTTCACTGAGAATTCAGCTGTTTTGTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATTTTGTCAAGCTTCTTTTCACTGAGAATTCAGCTGTTTTGTAG  1031

seq1  AAGGGATATGATCAGTTATTACGTTTGATGAGATACATTCTAAAATCTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATATGATCAGTTATTACGTTTGATGAGATACATTCTAAAATCTGA  1081

seq1  AACCCTCCCTACAGATTAGAAATTATACTTGAATATTCATGATCACAGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCCTACAGATTAGAAATTATACTTGAATATTCATGATCACAGGA  1131

seq1  AGTGATATTGACATTACATTCTGGTTCAGGAATTC  1181
      |||||||||||||||||||||||||||||||||||
seq2  AGTGATATTGACATTACATTCTGGTTCAGGAATTC  1166


seq1: chr12_51243371_51244271
seq2: B6Ng01-211G22.g_311_1221

seq1  AAAGATATTGGCTTAATCTTTCATATTGCTGGTATTTTGCAGTGATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTGGCTTAATCTTTCATATTGCTGGTATTTTGCAGTGATATTT  50

seq1  TGACACATTGAAATTCTCTGTTACTTCTGAGTTTGCTATGAACAAAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATTGAAATTCTCTGTTACTTCTGAGTTTGCTATGAACAAAGTAG  100

seq1  GTTGTGGCGAAAGACAGGATGTAATGTGCAGGAAGGTTGGGCCCAGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGCGAAAGACAGGATGTAATGTGCAGGAAGGTTGGGCCCAGGCCA  150

seq1  TGGAAATGGCTTAGATGGAATGAAATCAGGTGAGCAAAGGTGACTAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGGCTTAGATGGAATGAAATCAGGTGAGCAAAGGTGACTAGTCT  200

seq1  GGTAGACTCCTCTCAAGAATGTGATTTATTTTTCAAGGCTGAAGTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACTCCTCTCAAGAATGTGATTTATTTTTCAAGGCTGAAGTTTGAG  250

seq1  GATAGATTTAGTTGAGTGGAAAGATTGGTCACGGTATGGGATAGTCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTTAGTTGAGTGGAAAGATTGGTCACGGTATGGGATAGTCCTAT  300

seq1  GAGCTGTGACGTAGATAGGGAGCATCCTGGCTGAAGATTAGAGCTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGACGTAGATAGGGAGCATCCTGGCTGAAGATTAGAGCTCCTTT  350

seq1  TTAATGGAAAGCACATGCTAGGCTGGTGCCCTAGTTGTGAGGTTCAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGAAAGCACATGCTAGGCTGGTGCCCTAGTTGTGAGGTTCAGTCT  400

seq1  AGATCTGATGGGTTGCAGAAAAGGCAAGGATAGAGATGTCAGAGGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGATGGGTTGCAGAAAAGGCAAGGATAGAGATGTCAGAGGAACTC  450

seq1  ACCAGGCTAGACACAGGAGGAGGGTATAGAAGGTCTAAGCATCAGGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTAGACACAGGAGGAGGGTATAGAAGGTCTAAGCATCAGGTTGG  500

seq1  GTGGCTGAATGCTGTGTAGAGGTCCTCATTATTCCTTGAGAAAGGATTTC  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGGCTGAATGCTGTGTAGAGGTCCTCATTA-TCCTTGAGAAAGGATTTC  549

seq1  TCTTTAGTTCATCAGTTTACCTGTAAGTGCTAAGATTTTACATTCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTTCATCAGTTTACCTGTAAGTGCTAAGATTTTACATTCCTGTG  599

seq1  TT-GGTTACTGATACACCACTATGCCTACTATGTACATGGGTACTGGAGA  649
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTACTGATACACCACTATGCCTACTATGTACATGGGTACTGGAGA  649

seq1  TCTAAACTCAGGTTC-TCACAATG-CTTAAAACTTTATCGACTGCAAATC  697
      ||||||||||||||| |||||||| |||||||||||||||||||| ||||
seq2  TCTAAACTCAGGTTCTTCACAATGCCTTAAAACTTTATCGACTGC-AATC  698

seq1  TCCCCAATCC-ATTA-TTTTCAGACTTCCTATATATTTGTTTTACCTATA  745
      |||| | ||| |||| ||||||||||||||||||||||||||||||||||
seq2  TCCCAATTCCAATTATTTTTCAGACTTCCTATATATTTGTTTTACCTATA  748

seq1  ATGTCTAGAA--TTTTTAGTATTGTTCAAATGTAAGTC-TGACCAC-TGT  791
      ||||||||||  |||||||||||||||||||||||||| ||||||| |||
seq2  ATGTCTAGAAATTTTTTAGTATTGTTCAAATGTAAGTCTTGACCACTTGT  798

seq1  ATC-TTCCCCAAG-CAAAGCCAGT-CTAAAATTTTTATATAAC-TTGTAA  837
      ||| ||||||||| |||||||||| |||||| ||||| ||||| ||||| 
seq2  ATCTTTCCCCAAGCCAAAGCCAGTCCTAAAAGTTTTAAATAACTTTGTAT  848

seq1  TCAC-TTTTATAGTATTATTTTATAG-TATGTTGATGCTGCCCATTCAAT  885
       ||| |||||| | |||||||||||| |||||||| ||||  ||||| | 
seq2  CCACTTTTTATGGAATTATTTTATAGATATGTTGA-GCTG--CATTCCAG  895

seq1  ATATCATAGGCATTCT  901
          ||||||||||||
seq2  CATGCATAGGCATTCT  911


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