BAC Information

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BAC

Clone NameB6Ng01-211H23
Chromosome12 (Build37)
Map Location 56,720,888 - 56,899,018
singlet/doubletdoublet
Overlap geneGarnl1
Upstream geneLOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2
Downstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211H23.bB6Ng01-211H23.g
ACCGA029551GA029552
length1,0731,165
definitionB6Ng01-211H23.b B6Ng01-211H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,897,942 - 56,899,018)(56,720,888 - 56,722,048)
sequence
gaattcttcttagatttacaggttctacgtgtatggatggtttgcctgca
cgcctgtctgtatctcctgtgtatgcctagtgcttgtggaggctagagga
gggtactggctctcctggagctggagttccagatgtttgtgagccagcat
gtgggaactagggacttgggtcctctgcagctgcaccacgtgccctttat
gctgaactgtccttaggatctatataagggaaggcctctgatattttccc
tagtttgtccttgtcttttactctgccatgtacacgtcatgaatttactg
ttgaacattttaccagagtttttgtgtgcttttgtgtttttagaaatgaa
tatagagggtctggagagatagttcagtggtcatgagaaagtagtaccct
tgcagacggccagagttcaggtcccagcacccacatcaggtaactccaat
accaaagagttcagtgccctcttctggcatccatagacaacagcactcat
atgcacatacccatacacaaatacacaggcatatacattatgaggtacaa
ataaatcttaaagtagaagaacaaattagcttacttttgataggcccacc
tctcctgcttagtcaaggtctagctctgtatagccccaagagctcaaatt
tgtactcttccatcttaagctccaccaaaaatgtcgggactatgtcactg
tgcctggtctctagtacttgtttactagcatcaatcaagtgtgcagcttc
ccggctttgttaacagccatgtgggaaggaaactgagggacaatatcttg
gctcctaatatgttgggaagtcttgggttgagtcacgtttgcttttgttt
tattttgttagtttcattttcttgtttctcttgggacattacttgtattt
ttaagcatttcagaaaatatagatgtaaccataacctatttccttctcat
tttaaagttcttcaatgtattcaaaggaaatgtttttcttatctgtcaca
gtagtttaagttttttttttatattccataagtatatttttattctgtga
ctgctactctttctgtgcactca
gaattcaaatgatatttaacattttagttttagaaagccagggaatacct
ttatatattgcaaggcaaaaatcattgagtagcattgatgaattttattg
agatatgcatagatatactttacaaatacatgtcaaggctctcatgctac
tattagtagtaaagtatcatgtaagactgaaatatacagggaaaccaaag
tatcctatgaactttatgaaatgaatgtaaactattgattacattacaaa
gcagtggctggtaaatggatgcttttcaggggaaggtctattctatttct
tttctactgtagctaaatccttcaagaagcttgcaggctagttcacttgc
agcgaagacaaagtctcctaaggatcactttgtctaactgtatctgacca
gcagaaggccttctcaaaaagtctgcaacaggttatcatcaactgtctgt
ttttatgatgtcttaaattaatgaaattcttcagtagctgacactatcta
caccatttaggaaaagctgcgatttgtcagagcagacaaagctgggcttt
aatccatccttttaaccatattgccaagtctgtattgttttcactgcatc
tcaattagagacaggcaggacacctggtactgctttatcggagccccatg
gctgccagatgactcaaaactcatagcaggtgctaaggcagtgtgaggat
agctctattactgaaagctgaagtggaacacatttttaccatatataatt
gctcataaatcagtcaactattaaatgaaaacatcagaagagttgataag
cccatttttttttaccaatgttcatgtaaatacattaagaaagactagct
tcaaataaacaggcttaaaaattcaaacccatccaaagtctccgaaaata
ccctctgatttaataattcaataatcaaagtcactagcatgactatcaaa
tacttatctcctaccttcacaaagatgtatgaaacaaaatatttaaaaga
aaaactaagctatctgaatttcaatttttaatgaaataaaaacttcgtac
ctattcttgtaacatctacttaagagtatattcattaatcttataatgga
attttccttattggaagtaaaagaaacttgttccgaatactagtacctgg
gagtgagcctaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56897942_56899018
seq2: B6Ng01-211H23.b_47_1119 (reverse)

seq1  TGAGTGCAACAG-AAGAGTAGCAGTCACAGAATAAAAATATACTTTATGG  49
      ||||||| |||| |||||||||||||||||||||||||||||| ||||||
seq2  TGAGTGC-ACAGAAAGAGTAGCAGTCACAGAATAAAAATATAC-TTATGG  48

seq1  AATATAAAAAAAAACTTTTAAACTACTGTGACAGATAAGAAAAACATTTT  99
      ||||||||||||||   |||||||||||||||||||||||||||||||| 
seq2  AATATAAAAAAAAA-ACTTAAACTACTGTGACAGATAAGAAAAACATTT-  96

seq1  CCTTTTGAATACATTGAAGAACTTTAAAATGAGAAGGAAATAGGTTATGG  149
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCTTTGAATACATTGAAGAACTTTAAAATGAGAAGGAAATAGGTTATGG  145

seq1  TTACATCTATATTTTCTGAAATGCTTAAAAATACAAGTAATGTCCCAAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTATATTTTCTGAAATGCTTAAAAATACAAGTAATGTCCCAAGA  195

seq1  GAAACAAGAAAATGAAACTAACAAAATAAAACAAAAGCAAACGTGACTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAAAATGAAACTAACAAAATAAAACAAAAGCAAACGTGACTCA  245

seq1  ACCCAAGACTTCCCAACATATTAGGAGCCAAGATATTGTCCCTCAGTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGACTTCCCAACATATTAGGAGCCAAGATATTGTCCCTCAGTTTC  295

seq1  CTTCCCACATGGCTGTTAACAAAGCCGGGAAGCTGCACACTTGATTGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACATGGCTGTTAACAAAGCCGGGAAGCTGCACACTTGATTGATG  345

seq1  CTAGTAAACAAGTACTAGAGACCAGGCACAGTGACATAGTCCCGACATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAACAAGTACTAGAGACCAGGCACAGTGACATAGTCCCGACATTT  395

seq1  TTGGTGGAGCTTAAGATGGAAGAGTACAAATTTGAGCTCTTGGGGCTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGAGCTTAAGATGGAAGAGTACAAATTTGAGCTCTTGGGGCTATA  445

seq1  CAGAGCTAGACCTTGACTAAGCAGGAGAGGTGGGCCTATCAAAAGTAAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAGACCTTGACTAAGCAGGAGAGGTGGGCCTATCAAAAGTAAGC  495

seq1  TAATTTGTTCTTCTACTTTAAGATTTATTTGTACCTCATAATGTATATGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTTCTTCTACTTTAAGATTTATTTGTACCTCATAATGTATATGC  545

seq1  CTGTGTATTTGTGTATGGGTATGTGCATATGAGTGCTGTTGTCTATGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTTGTGTATGGGTATGTGCATATGAGTGCTGTTGTCTATGGAT  595

seq1  GCCAGAAGAGGGCACTGAACTCTTTGGTATTGGAGTTACCTGATGTGGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGAGGGCACTGAACTCTTTGGTATTGGAGTTACCTGATGTGGGT  645

seq1  GCTGGGACCTGAACTCTGGCCGTCTGCAAGGGTACTACTTTCTCATGACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACCTGAACTCTGGCCGTCTGCAAGGGTACTACTTTCTCATGACC  695

seq1  ACTGAACTATCTCTCCAGACCCTCTATATTCATTTCTAAAAACACAAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTATCTCTCCAGACCCTCTATATTCATTTCTAAAAACACAAAAG  745

seq1  CACACAAAAACTCTGGTAAAATGTTCAACAGTAAATTCATGACGTGTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAACTCTGGTAAAATGTTCAACAGTAAATTCATGACGTGTACA  795

seq1  TGGCAGAGTAAAAGACAAGGACAAACTAGGGAAAATATCAGAGGCCTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGTAAAAGACAAGGACAAACTAGGGAAAATATCAGAGGCCTTCC  845

seq1  CTTATATAGATCCTAAGGACAGTTCAGCATAAAGGGCACGTGGTGCAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAGATCCTAAGGACAGTTCAGCATAAAGGGCACGTGGTGCAGCT  895

seq1  GCAGAGGACCCAAGTCCCTAGTTCCCACATGCTGGCTCACAAACATCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGACCCAAGTCCCTAGTTCCCACATGCTGGCTCACAAACATCTGG  945

seq1  AACTCCAGCTCCAGGAGAGCCAGTACCCTCCTCTAGCCTCCACAAGCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGCTCCAGGAGAGCCAGTACCCTCCTCTAGCCTCCACAAGCACT  995

seq1  AGGCATACACAGGAGATACAGACAGGCGTGCAGGCAAACCATCCATACAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATACACAGGAGATACAGACAGGCGTGCAGGCAAACCATCCATACAC  1045

seq1  GTAGAACCTGTAAATCTAAGAAGAATTC  1077
      ||||||||||||||||||||||||||||
seq2  GTAGAACCTGTAAATCTAAGAAGAATTC  1073

seq1: chr12_56720888_56722048
seq2: B6Ng01-211H23.g_67_1231

seq1  GAATTCAAATGATATTTAACATTTTAGTTTTAGAAAGCCAGGGAATACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGATATTTAACATTTTAGTTTTAGAAAGCCAGGGAATACCT  50

seq1  TTATATATTGCAAGGCAAAAATCATTGAGTAGCATTGATGAATTTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTGCAAGGCAAAAATCATTGAGTAGCATTGATGAATTTTATTG  100

seq1  AGATATGCATAGATATACTTTACAAATACATGTCAAGGCTCTCATGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCATAGATATACTTTACAAATACATGTCAAGGCTCTCATGCTAC  150

seq1  TATTAGTAGTAAAGTATCATGTAAGACTGAAATATACAGGGAAACCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTAGTAAAGTATCATGTAAGACTGAAATATACAGGGAAACCAAAG  200

seq1  TATCCTATGAACTTTATGAAATGAATGTAAACTATTGATTACATTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATGAACTTTATGAAATGAATGTAAACTATTGATTACATTACAAA  250

seq1  GCAGTGGCTGGTAAATGGATGCTTTTCAGGGGAAGGTCTATTCTATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCTGGTAAATGGATGCTTTTCAGGGGAAGGTCTATTCTATTTCT  300

seq1  TTTCTACTGTAGCTAAATCCTTCAAGAAGCTTGCAGGCTAGTTCACTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGTAGCTAAATCCTTCAAGAAGCTTGCAGGCTAGTTCACTTGC  350

seq1  AGCGAAGACAAAGTCTCCTAAGGATCACTTTGTCTAACTGTATCTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAGACAAAGTCTCCTAAGGATCACTTTGTCTAACTGTATCTGACCA  400

seq1  GCAGAAGGCCTTCTCAAAAAGTCTGCAACAGGTTATCATCAACTGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGCCTTCTCAAAAAGTCTGCAACAGGTTATCATCAACTGTCTGT  450

seq1  TTTTATGATGTCTTAAATTAATGAAATTCTTCAGTAGCTGACACTATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGATGTCTTAAATTAATGAAATTCTTCAGTAGCTGACACTATCTA  500

seq1  CACCATTTAGGAAAAGCTGCGATTTGTCAGAGCAGACAAAGCTGGGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTAGGAAAAGCTGCGATTTGTCAGAGCAGACAAAGCTGGGCTTT  550

seq1  AATCCATCCTTTTAACCATATTGCCAAGTCTGTATTGTTTTCACTGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCCTTTTAACCATATTGCCAAGTCTGTATTGTTTTCACTGCATC  600

seq1  TCAATTAGAGACAGGCAGGACACCTGGTACTGCTTTATCGGAGCCCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGAGACAGGCAGGACACCTGGTACTGCTTTATCGGAGCCCCATG  650

seq1  GCTGCCAGATGACTCAAAACTCATAGCAGGTGCTAAGGCAGTGTGAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGATGACTCAAAACTCATAGCAGGTGCTAAGGCAGTGTGAGGAT  700

seq1  AGCTCTATTACTGAAAGCTGAAGTGGAACACATTTTTACCATATATAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTATTACTGAAAGCTGAAGTGGAACACATTTTTACCATATATAATT  750

seq1  GCTCATAAATCAGTCAACTATTAAATGAAAACATCAGAAGAGTTGATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAAATCAGTCAACTATTAAATGAAAACATCAGAAGAGTTGATAAG  800

seq1  CCCA-TTTTTTTTACCAATGTTCATGTAAATACATTAAGAAAGACTAGCT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTTTTTACCAATGTTCATGTAAATACATTAAGAAAGACTAGCT  850

seq1  TCAAATAAACAGGCTTAAAAATTCAAACCCATCCAAAGTCTCCGAAAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAACAGGCTTAAAAATTCAAACCCATCCAAAGTCTCCGAAAATA  900

seq1  CCCTCTGATTTAATAATTCAATAATCAAAGTCACTAGCATGACTATCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGATTTAATAATTCAATAATCAAAGTCACTAGCATGACTATCAAA  950

seq1  TACTTATCTCCTACCTTCACAAAAGATGTATGAAACAAAATATTTAAAAG  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACTTATCTCCTACCTTCAC-AAAGATGTATGAAACAAAATATTTAAAAG  999

seq1  AAAAACTAAGCTATCTGAATTTCAA-TTTTAATGAAATAAAAACTTCGTA  1048
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAACTAAGCTATCTGAATTTCAATTTTTAATGAAATAAAAACTTCGTA  1049

seq1  CCTATTCTTGTTAACATCTACTTAAGAGTATTATCATTAATCTTTAATAA  1098
      |||||||||| ||||||||||||||||||||  |||||||||||  ||||
seq2  CCTATTCTTG-TAACATCTACTTAAGAGTATATTCATTAATCTT--ATAA  1096

seq1  TGAAATTTTCC-TATTG--AGT-AAAGAA--CTGTTCCAAAATTACTAGT  1142
      || |||||||| |||||  ||| ||||||   |||||| ||  |||||||
seq2  TGGAATTTTCCTTATTGGAAGTAAAAGAAACTTGTTCCGAA--TACTAGT  1144

seq1  AC--TGGAGTGAGCCTAAAGC  1161
      ||   ||||||||||||||||
seq2  ACCTGGGAGTGAGCCTAAAGC  1165