BAC Information

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BAC

Clone NameB6Ng01-211P19
Chromosome12 (Build37)
Map Location 35,659,572 - 35,794,136
singlet/doubletdoublet
Overlap genePrps1l1, Snx13
Upstream geneHdac9, 4921508M14Rik
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211P19.bB6Ng01-211P19.g
ACCGA029899GA029900
length1,1671,081
definitionB6Ng01-211P19.b B6Ng01-211P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,792,969 - 35,794,136)(35,659,572 - 35,660,628)
sequence
gaattcttaaagtaaataagcccttcttatggaattaaatgtttcctacc
taatctgtggtctggcaaccccttaagcctggccagcaaagtaaagtttc
aaaaataagcagtagcattaagagaactaaacagaaagaagacaacctgt
ggccttgaatctaaatgtaaaaaacaataaagctgacaggcattgaaaat
catttcatatcatactattcctctactatgatttggctttcacaactgaa
tattttctatgtgtaaaatgtatacaaatctaccagttaataaaacatta
tcctaaaatgtggacaactagatgccttagtggattaagggtgatggcta
caaattgaaaggagagaactgatctggcaaggagtactctgaccttaata
tgtgtctctagcaaacacacacacacacacacacacacacacacacacaa
taattacaaactacaatcagcgatttaatgtgaagtcactcaataaagga
tacatgagagaagtgtatatactttagaataaagttaattcaaaagatct
taacctaatttatgttttaaagaataagatttggactgaaaggctagaaa
agtgaactgaaccagtaagaagccagctgtattcacacagaatatacagg
tactatcagcatcttaaatcacatagcacttaggtcagttgaccatgact
caattcatcttgttctattctagattacacacgaatccacttcaaaatta
acaacaacaaacattccaaatgtatgaaattaatacaaaccaatgctttg
caatagttactttagcatggtaagttgccagatgcttttgcaaacttcat
aaaacatctaacattttccatcagcgacaagaaacacaggtaagctgtac
agctttattctacccccaccctgaaaacacatttacattcaaaaataatc
tacttccttaactacacaaattatattaaagggttgagtgcaacagtata
tctgttttcaaataatctgtccaaaaagcttatggatagtaaatgggtca
tactaaaaagactttcttatagtagtatgtgttcatctaaattccaacct
ccttaatcttatattgatacctttattagaaccatattagaatgtccaaa
atccagaggagctaatt

gaattcacttacccactcacagaccctctttttctcatgtctacagaaag
agtaaagcagattgacaccaataagctgtttcttgtttttttcattgtag
tttatttgaaacaggagctcatgaattgaattgataagaagtaaattaac
atataaggatatgaagcagaatgtatttacacaaaaagtgactgttggta
aagtaaactgctaaagtcaacaacagtcacaaagtaacatttattgtaaa
gatgaatttacagaaggtggtgtatacagcatacatttattgtatgcatt
cagtatgttagtgtagggcaggagaataaagtacatctaattgtaactct
cgtttccaaggggctatcagtcagaaagtttaaattggaatgtagatgtc
cttttcattatcatagaacaaaattataatccctatttatgatgtttagt
tttatgccaactttacacaagctagagtcgtcagagcggcaagagcacca
acggaggcaatgcctccataagacctggctgtagacaagactgtagggta
tattatttttcattagtgattggtgggagagggcccagcccattgtgagt
aatgccatctctgggttggcggttctctataagaaagcaggctgagcaag
ccatagttggcagaccagtaagcagtactcttccatggcctctgcatcac
cagcctcaaagtccctgatcttagttcctgtcctgacttccttcagttga
taaacagagagtataaattaaataagcccttttctccctaactttgatct
tgggttctgatatttgatcacagcaatagtaacccgaagggaagacacta
attcctaaaacccatctcatcactgtgagcactttctagtagtttctcag
aactattgatttctatttattttctaattaaccaagatccccgaagattg
atccatttgacagcctttctactgcccagctaatcacttcaagattggct
ttcaacaaagaacactggttactttccaccatcgggaggagaatttgagg
gttggcctcaggctgaactgagctggtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35792969_35794136
seq2: B6Ng01-211P19.b_45_1211 (reverse)

seq1  AATTAGCT-CTCT-GATTTTGAACTTTCTAATAT-GTTCTAAATAAGTAA  47
      |||||||| |||| ||||||| || ||||||||| |||||||  |||  |
seq2  AATTAGCTCCTCTGGATTTTGGACATTCTAATATGGTTCTAATAAAGGTA  50

seq1  TCAATATAAAGATAAAGGAAGTTGGAAATTTAGATGAACACATTACTACT  97
      ||||||| ||||| ||||| ||||| |||||||||||||||| |||||||
seq2  TCAATAT-AAGATTAAGGAGGTTGG-AATTTAGATGAACACA-TACTACT  97

seq1  ATAAGAAAGTCTTTTTAGTATGA-CCATTTACTTATCCATAAGCTTTTTG  146
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  ATAAGAAAGTCTTTTTAGTATGACCCATTTAC-TATCCATAAGCTTTTTG  146

seq1  GACAAGATTATTTGAAAACAGATATACTGTTGCACTCAACCCTTTAATTA  196
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAC-AGATTATTTGAAAACAGATATACTGTTGCACTCAACCCTTTAA-TA  194

seq1  TAA-TTGTGTAGTTAAGGAAGTAGATTATTTTTGAATGT-AATGTGTTTT  244
      ||| ||||||||||||||||||||||||||||||||||| |||||| |||
seq2  TAATTTGTGTAGTTAAGGAAGTAGATTATTTTTGAATGTAAATGTG-TTT  243

seq1  TCAGGGTGGGGGTAGAATAAAGCTGTACAGCTTACCTGTGTTTCTTGTCG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGGGGGTAGAATAAAGCTGTACAGCTTACCTGTGTTTCTTGTCG  293

seq1  CTGATGGAAAATGTTAGATGTTTTATGAAGTTTGCAAAAGCATCTGGCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAAAATGTTAGATGTTTTATGAAGTTTGCAAAAGCATCTGGCAA  343

seq1  CTTACCATGCTAAAGTAACTATTGCAAAGCATTGGTTTGTATTAATTTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATGCTAAAGTAACTATTGCAAAGCATTGGTTTGTATTAATTTCA  393

seq1  TACATTTGGAATGTTTGTTGTTGTTAATTTTGAAGTGGATTCGTGTGTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGGAATGTTTGTTGTTGTTAATTTTGAAGTGGATTCGTGTGTAA  443

seq1  TCTAGAATAGAACAAGATGAATTGAGTCATGGTCAACTGACCTAAGTGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATAGAACAAGATGAATTGAGTCATGGTCAACTGACCTAAGTGCT  493

seq1  ATGTGATTTAAGATGCTGATAGTACCTGTATATTCTGTGTGAATACAGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTAAGATGCTGATAGTACCTGTATATTCTGTGTGAATACAGCT  543

seq1  GGCTTCTTACTGGTTCAGTTCACTTTTCTAGCCTTTCAGTCCAAATCTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTACTGGTTCAGTTCACTTTTCTAGCCTTTCAGTCCAAATCTTA  593

seq1  TTCTTTAAAACATAAATTAGGTTAAGATCTTTTGAATTAACTTTATTCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAACATAAATTAGGTTAAGATCTTTTGAATTAACTTTATTCTA  643

seq1  AAGTATATACACTTCTCTCATGTATCCTTTATTGAGTGACTTCACATTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATACACTTCTCTCATGTATCCTTTATTGAGTGACTTCACATTAA  693

seq1  ATCGCTGATTGTAGTTTGTAATTATTGTGTGTGTGTGTGTGTGTGTGTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTGATTGTAGTTTGTAATTATTGTGTGTGTGTGTGTGTGTGTGTGT  743

seq1  GTGTGTGTGTTTGCTAGAGACACATATTAAGGTCAGAGTACTCCTTGCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTTTGCTAGAGACACATATTAAGGTCAGAGTACTCCTTGCCA  793

seq1  GATCAGTTCTCTCCTTTCAATTTGTAGCCATCACCCTTAATCCACTAAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTCTCTCCTTTCAATTTGTAGCCATCACCCTTAATCCACTAAGG  843

seq1  CATCTAGTTGTCCACATTTTAGGATAATGTTTTATTAACTGGTAGATTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTTGTCCACATTTTAGGATAATGTTTTATTAACTGGTAGATTTG  893

seq1  TATACATTTTACACATAGAAAATATTCAGTTGTGAAAGCCAAATCATAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTACACATAGAAAATATTCAGTTGTGAAAGCCAAATCATAGT  943

seq1  AGAGGAATAGTATGATATGAAATGATTTTCAATGCCTGTCAGCTTTATTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATAGTATGATATGAAATGATTTTCAATGCCTGTCAGCTTTATTG  993

seq1  TTTTTTACATTTAGATTCAAGGCCACAGGTTGTCTTCTTTCTGTTTAGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACATTTAGATTCAAGGCCACAGGTTGTCTTCTTTCTGTTTAGTT  1043

seq1  CTCTTAATGCTACTGCTTATTTTTGAAACTTTACTTTGCTGGCCAGGCTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATGCTACTGCTTATTTTTGAAACTTTACTTTGCTGGCCAGGCTT  1093

seq1  AAGGGGTTGCCAGACCACAGATTAGGTAGGAAACATTTAATTCCATAAGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTTGCCAGACCACAGATTAGGTAGGAAACATTTAATTCCATAAGA  1143

seq1  AGGGCTTATTTACTTTAAGAATTC  1168
      ||||||||||||||||||||||||
seq2  AGGGCTTATTTACTTTAAGAATTC  1167


seq1: chr12_35659572_35660628
seq2: B6Ng01-211P19.g_66_1146

seq1  GAATTCACTTACCCACTCACAGACCCTCTTTTTCTCATGTCTACAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACCCACTCACAGACCCTCTTTTTCTCATGTCTACAGAAAG  50

seq1  AGTAAAGCAGATTGACACCAATAAGCTGTTTCTTGTTTTTTTCATTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCAGATTGACACCAATAAGCTGTTTCTTGTTTTTTTCATTGTAG  100

seq1  TTTATTTGAAACAGGAGCTCATGAATTGAATTGATAAGAAGTAAATTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGAAACAGGAGCTCATGAATTGAATTGATAAGAAGTAAATTAAC  150

seq1  ATATAAGGATATGAAGCAGAATGTATTTACACAAAAAGTGACTGTTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGATATGAAGCAGAATGTATTTACACAAAAAGTGACTGTTGGTA  200

seq1  AAGTAAACTGCTAAAGTCAACAACAGTCACAAAGTAACATTTATTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACTGCTAAAGTCAACAACAGTCACAAAGTAACATTTATTGTAAA  250

seq1  GATGAATTTACAGAAGGTGGTGTATACAGCATACATTTATTGTATGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTTACAGAAGGTGGTGTATACAGCATACATTTATTGTATGCATT  300

seq1  CAGTATGTTAGTGTAGGGCAGGAGAATAAAGTACATCTAATTGTAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTTAGTGTAGGGCAGGAGAATAAAGTACATCTAATTGTAACTCT  350

seq1  CGTTTCCAAGGGGCTATCAGTCAGAAAGTTTAAATTGGAATGTAGATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCAAGGGGCTATCAGTCAGAAAGTTTAAATTGGAATGTAGATGTC  400

seq1  CTTTTCATTATCATAGAACAAAATTATAATCCCTATTTATGATGTTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTATCATAGAACAAAATTATAATCCCTATTTATGATGTTTAGT  450

seq1  TTTATGCCAACTTTACACAAGCTAGAGTCGTCAGAGCGGCAAGAGCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCAACTTTACACAAGCTAGAGTCGTCAGAGCGGCAAGAGCACCA  500

seq1  ACGGAGGCAATGCCTCCATAAGACCTGGCTGTAGACAAGACTGTAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGCAATGCCTCCATAAGACCTGGCTGTAGACAAGACTGTAGGGTA  550

seq1  TATTATTTTTCATTAGTGATTGGTGGGAGAGGGCCCAGCCCATTGTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTCATTAGTGATTGGTGGGAGAGGGCCCAGCCCATTGTGAGT  600

seq1  AATGCCATCTCTGGGTTGGCGGTTCTCTATAAGAAAGCAGGCTGAGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATCTCTGGGTTGGCGGTTCTCTATAAGAAAGCAGGCTGAGCAAG  650

seq1  CCATAGTTGGCAGACCAGTAAGCAGTACTCTTCCATGGCCTCTGCATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTGGCAGACCAGTAAGCAGTACTCTTCCATGGCCTCTGCATCAC  700

seq1  CAGCCTCAAAGTCCCTGATCTTAGTTCCTGTCCTGACTTCCTTCAG-TGA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGCCTCAAAGTCCCTGATCTTAGTTCCTGTCCTGACTTCCTTCAGTTGA  750

seq1  TAAACAGAGAGTATAAATTAAATAAGCCCTTTTCTCCCTAAC-TTGATCT  798
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAACAGAGAGTATAAATTAAATAAGCCCTTTTCTCCCTAACTTTGATCT  800

seq1  T-GGTTCTGATATTTGATCACAGCAATAGTAACCCGAA-GGAAGACACTA  846
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGTTCTGATATTTGATCACAGCAATAGTAACCCGAAGGGAAGACACTA  850

seq1  A-TCCTAAAACCCATCTCATCACTGTGAGCACTTTCTAGTAGTTTCTCAG  895
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAAACCCATCTCATCACTGTGAGCACTTTCTAGTAGTTTCTCAG  900

seq1  -ACTATTGATTTCTATT--ATTTCT-ATTAA-CAAGAT-CCCGAAGATTG  939
       ||||||||||||||||   ||||| ||||| |||||| |||||||||||
seq2  AACTATTGATTTCTATTTATTTTCTAATTAACCAAGATCCCCGAAGATTG  950

seq1  ATCCA-TTGACAGCC--TCTACTG-CCAG-TTATCAC-TCAAGA-TGGCT  982
      ||||| |||||||||  ||||||| |||| | ||||| |||||| |||||
seq2  ATCCATTTGACAGCCTTTCTACTGCCCAGCTAATCACTTCAAGATTGGCT  1000

seq1  TTTCACCAAGGACACTGG-TACTT--CACCATTCGGGAGGAG-ATATGAG  1028
      ||  || ||| ||||||| |||||  ||||| |||||||||| || ||||
seq2  TTCAACAAAGAACACTGGTTACTTTCCACCA-TCGGGAGGAGAATTTGAG  1049

seq1  GGTTGG-CTCATGCTG-ACTGAGCT-GTGGAA  1057
      |||||| |||| |||| |||||||| ||||||
seq2  GGTTGGCCTCAGGCTGAACTGAGCTGGTGGAA  1081


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