BAC Information

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BAC

Clone NameB6Ng01-212J21
Chromosome12 (Build37)
Map Location 59,021,827 - 59,126,043
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212J21.bB6Ng01-212J21.g
ACCGA030368GA030369
length1,1951,170
definitionB6Ng01-212J21.b B6Ng01-212J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,021,827 - 59,023,033)(59,124,863 - 59,126,043)
sequence
gaattcctaaggcatgttctcatactgttaggggtaaaagggtctaggga
aggaactgacaacgttactcctgataccctattccactggcagaaacagt
tagacatgaaatcagagtagaggtgaaggattgggacaaataatacaatc
tacataatgtcttaataatttaaaaaagtttggattatatgtcattgcag
gtttcagggaaagcacattcttatattgaaaagaaatcaccatgctatta
ttccagtaataagcacattccactccttttatgtcctccggcatttttta
aggtttgtgtttgacttttgcagtaatcccatgagctactatactcgtat
atagccaaggaaacaaaggcacacagatattagtagaaatgctaagtgtt
ttccaggaactcgggactctggatgtgcatcaatttgaatgttgtagcca
agacttatgtgttggggcatgtggctacatcaagattattgtctctgtac
tggtgtgtttcataaatcagaagagggaaccctctaatggaaaggctact
ctcctagtcaattctccacctgggaggttgctctgtcaagtattgctcct
caacatctatcttccccaagttggagtgagaattgtcatcttctctttat
ctttcccttcttgtgcatagagggtttacccaacatatgctttcttttac
tacactggtagaatttggcataagcatcttggcaggagacttcatgtgct
ctttacatctattaagttaataagctaactggccctaatcacaggactcc
acagtttgttccctggaacatactgaatttcctttttggagataggagtg
atttggccaacaggagcaagaacctgagccagggaagaataaaaataaaa
gtaaatagctaagccatttgtatttacttagaaagtagagagaaaacaaa
gctaatctcgtccaacatgaaaaattattagaagtggtctattaataaga
agtcaaggttcaacggcatacatatagcacgttcacttgcatattttggt
gccctgcaatttaatgcttctaagaacttaaaaagtctagtttcaatttt
agaggatgctgccatcactattttactaattactttttccacatatggcc
ataaaatcaattggatacttggaggttacctctctaaccttttta

gaattctctattatcataggtcctggagcagacatttttcttacatgatc
actggtacgttccaaggtatctgtgggcagaagttacatggcttttcctg
acctgttcttatttaagagcatcacttcagtgtatgcaaaagaaacaaga
caccacagccatcttagaatcaaggatgggaggttatactcactatttaa
tggaatacagaattattttttggcatttcaattcttcgtgcttctcataa
actccaaatcattgtttcatttacatctctaagtgcatgctgttatcttt
gacgatgtaatcactgacatgcttatcaatcctgttgccatactcttctt
aattttgctgcactaaatttatttatcagatatacttgcttttctataca
ttttatgcctcactccttacaagttaagatctaagatcagctgttagttt
tcacctttttaacttttttcttctactgtttataaatgcagattaacacc
ccacacttactagatgctttcttcatgaaataagataataattcctaacc
actcaataaagttgattaataaaatgctgcctctagaaagtattcctgaa
gtatctttaagtcattatacacttactatagctgaaactatcaagagttg
aggataaaatggcagctctcaagaggctacctagagctgactcaatttca
gaatttgttctgaacatagaaatgtatgtcttgattctttgtggctcatt
caataagcctaattttgtaggataaaagatttaaaccggttaagacaagt
ttaaaatattaaagtattttcaaaggtccccatgtcaaaggattgggtta
tgcatggtatcagctgtaaaagtgcctttatacagcaagaaaatcattca
tgacaggagtcacctttacagaaggcacagatacagaagccagctggatg
atagcttctacattgaaaaatgtcttctgatatgattccaaatataatta
tagtgtgatctttatatgattatatccacagcatattctactggctatgt
tatgccttgaataactaatgcatagactagttattattttttgtatggag
tttaggtagccaagaaggttgatttactttcatcttatatgacctcttct
atagtttactgactataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59021827_59023033
seq2: B6Ng01-212J21.b_48_1242

seq1  GAATTCCTAAGGCATGTTCTCATACTGTTAGGGGTAAAAGGGTCTAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGGCATGTTCTCATACTGTTAGGGGTAAAAGGGTCTAGGGA  50

seq1  AGGAACTGACAACGTTACTCCTGATACCCTATTCCACTGGCAGAAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGACAACGTTACTCCTGATACCCTATTCCACTGGCAGAAACAGT  100

seq1  TAGACATGAAATCAGAGTAGAGGTGAAGGATTGGGACAAATAATACAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGAAATCAGAGTAGAGGTGAAGGATTGGGACAAATAATACAATC  150

seq1  TACATAATGTCTTAATAATTTAAAAAAGTTTGGATTATATGTCATTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGTCTTAATAATTTAAAAAAGTTTGGATTATATGTCATTGCAG  200

seq1  GTTTCAGGGAAAGCACATTCTTATATTGAAAAGAAATCACCATGCTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGGAAAGCACATTCTTATATTGAAAAGAAATCACCATGCTATTA  250

seq1  TTCCAGTAATAAGCACATTCCACTCCTTTTATGTCCTCCGGCATTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTAATAAGCACATTCCACTCCTTTTATGTCCTCCGGCATTTTTTA  300

seq1  AGGTTTGTGTTTGACTTTTGCAGTAATCCCATGAGCTACTATACTCGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTGTTTGACTTTTGCAGTAATCCCATGAGCTACTATACTCGTAT  350

seq1  ATAGCCAAGGAAACAAAGGCACACAGATATTAGTAGAAATGCTAAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAAGGAAACAAAGGCACACAGATATTAGTAGAAATGCTAAGTGTT  400

seq1  TTCCAGGAACTCGGGACTCTGGATGTGCATCAATTTGAATGTTGTAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAACTCGGGACTCTGGATGTGCATCAATTTGAATGTTGTAGCCA  450

seq1  AGACTTATGTGTTGGGGCATGTGGCTACATCAAGATTATTGTCTCTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATGTGTTGGGGCATGTGGCTACATCAAGATTATTGTCTCTGTAC  500

seq1  TGGTGTGTTTCATAAATCAGAAGAGGGAACCCTCTAATGGAAAGGCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTTTCATAAATCAGAAGAGGGAACCCTCTAATGGAAAGGCTACT  550

seq1  CTCCTAGTCAATTCTCCACCTGGGAGGTTGCTCTGTCAAGTATTGCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGTCAATTCTCCACCTGGGAGGTTGCTCTGTCAAGTATTGCTCCT  600

seq1  CAACATCTATCTTCCCCAAGTTGGAGTGAGAATTGTCATCTTCTCTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTATCTTCCCCAAGTTGGAGTGAGAATTGTCATCTTCTCTTTAT  650

seq1  CTTTCCCTTCTTGTGCATAGAGGGTTTACCCAACATATGCTTTCTTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTTCTTGTGCATAGAGGGTTTACCCAACATATGCTTTCTTTTAC  700

seq1  TACACTGGTAGAATTTGGCATAAGCATCTTGGCAGGAGACTTCATGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGTAGAATTTGGCATAAGCATCTTGGCAGGAGACTTCATGTGCT  750

seq1  CTTTACATCTATTAAGTTAATAAGCTAACTGGCCCTAATCACAGGACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATCTATTAAGTTAATAAGCTAACTGGCCCTAATCACAGGACTCC  800

seq1  ACAGTTTGTTCCCTGGAACATACTGAATTTCCTTTTTGGAGATAGGAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGTTCCCTGGAACATACTGAATTTCCTTTTTGGAGATAGGAGTG  850

seq1  ATTTGGCCAACAGGAGCAAGAACCTGAGCCAGGGAAGAATAAAAATAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCCAACAGGAGCAAGAACCTGAGCCAGGGAAGAATAAAAATAAAA  900

seq1  GTAAATAGCTAAGCCATTTGTATTTACTTAGAAAGTAGAGAGAAAACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAAATAGCTAAGCCATTTGTATTTACTTAGAAAGTAGAGAGAAAAC-AA  949

seq1  AGCTAATCTCGTCCAACATGAAAAATTATTAGAAGTGGTCTATTAAATAA  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTAATCTCGTCCAACATGAAAAATTATTAGAAGTGGTCTATT-AATAA  998

seq1  GAAGTCAAGGTTTCAACGGCATACATTATAGCACGTTCACTTGCATATTT  1050
      |||||||||| |||||||||||||| ||||||||||||||||||||| ||
seq2  GAAGTCAAGG-TTCAACGGCATACA-TATAGCACGTTCACTTGCATA-TT  1045

seq1  TTGGTGGCCCTGCAATTTTAATGCTTCTAAG-ACTTAAAAAGTTCTTAAT  1099
      ||||| ||||||||| ||||||||||||||| |||||||||||   || |
seq2  TTGGT-GCCCTGCAA-TTTAATGCTTCTAAGAACTTAAAAAGT--CTAGT  1091

seq1  TTCAATTTTTAGA-GATGCTG-CATCAACTATTTTACTAAATTACTTTTT  1147
      ||||| ||||||| ||||||| |||| ||||||||||| |||||||||||
seq2  TTCAA-TTTTAGAGGATGCTGCCATC-ACTATTTTACT-AATTACTTTTT  1138

seq1  TCCCACTATTGCCATAAAATCATCTTTGTATACTTGAAGTGTAACTCTCT  1197
       | || ||| ||||||||||||   ||| ||||||| ||  || ||||||
seq2  CCACA-TATGGCCATAAAATCA--ATTGGATACTTGGAGGTTACCTCTCT  1185

seq1  AACTTTTTTA  1207
      ||| ||||||
seq2  AACCTTTTTA  1195


seq1: chr12_59124863_59126043
seq2: B6Ng01-212J21.g_65_1234 (reverse)

seq1  TTTTATAATACAGTAAACACTTAT-GAAGAGGTAAATAATAGATGAAAGT  49
      ||||||| | ||||||||   ||| ||||||||  |||  ||||||||||
seq2  TTTTATAGT-CAGTAAAC---TATAGAAGAGGT-CATATAAGATGAAAGT  45

seq1  TAATCAAACTTCTTTGCTA-CTAAACT-CATAC--AAAATAATTACTAGT  95
       |||||| |||||| |||| ||||||| |||||  |||||||| ||||||
seq2  AAATCAACCTTCTTGGCTACCTAAACTCCATACAAAAAATAATAACTAGT  95

seq1  CTATGCAATAGTTATTCAAAGGGCAATAACAATAGCCAGTAAGATATGCT  145
      ||||||| |||||||||||  ||| ||||| ||||||||||  |||||||
seq2  CTATGCATTAGTTATTCAA--GGC-ATAAC-ATAGCCAGTAGAATATGCT  141

seq1  GTGATTATAAATCATTATAAAGATCAACACTATAATTATATTTTGGAATC  195
      |||  ||| ||||| |||||||||| |||||||||||||| |||||||||
seq2  GTGGATAT-AATCA-TATAAAGATC-ACACTATAATTATA-TTTGGAATC  187

seq1  ATATTCAGAAGAACATTTTTCAATGTAGAAGCTATCATCCAGCTGGCTTC  245
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATA-TCAGAAG-ACATTTTTCAATGTAGAAGCTATCATCCAGCTGGCTTC  235

seq1  TTGTATCTGTGCCTTCTGTAAAGGTGACTCCTGTCATGAATGATTTTCTT  295
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTATCTGTGCCTTCTGTAAAGGTGACTCCTGTCATGAATGATTTTCTT  284

seq1  GCTGTATAAAGGCACTTTTACAGCTGATACCATGCATAACCCAATCCTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATAAAGGCACTTTTACAGCTGATACCATGCATAACCCAATCCTTT  334

seq1  GACATGGGGACCTTTGAAAATACTTTAATATTTTAAACTTGTCTTAACCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGGGACCTTTGAAAATACTTTAATATTTTAAACTTGTCTTAACCG  384

seq1  GTTTAAATCTTTTATCCTACAAAATTAGGCTTATTGAATGAGCCACAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATCTTTTATCCTACAAAATTAGGCTTATTGAATGAGCCACAAAG  434

seq1  AATCAAGACATACATTTCTATGTTCAGAACAAATTCTGAAATTGAGTCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGACATACATTTCTATGTTCAGAACAAATTCTGAAATTGAGTCAG  484

seq1  CTCTAGGTAGCCTCTTGAGAGCTGCCATTTTATCCTCAACTCTTGATAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTAGCCTCTTGAGAGCTGCCATTTTATCCTCAACTCTTGATAGT  534

seq1  TTCAGCTATAGTAAGTGTATAATGACTTAAAGATACTTCAGGAATACTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTATAGTAAGTGTATAATGACTTAAAGATACTTCAGGAATACTTT  584

seq1  CTAGAGGCAGCATTTTATTAATCAACTTTATTGAGTGGTTAGGAATTATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCAGCATTTTATTAATCAACTTTATTGAGTGGTTAGGAATTATT  634

seq1  ATCTTATTTCATGAAGAAAGCATCTAGTAAGTGTGGGGTGTTAATCTGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTTCATGAAGAAAGCATCTAGTAAGTGTGGGGTGTTAATCTGCA  684

seq1  TTTATAAACAGTAGAAGAAAAAAGTTAAAAAGGTGAAAACTAACAGCTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACAGTAGAAGAAAAAAGTTAAAAAGGTGAAAACTAACAGCTGA  734

seq1  TCTTAGATCTTAACTTGTAAGGAGTGAGGCATAAAATGTATAGAAAAGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATCTTAACTTGTAAGGAGTGAGGCATAAAATGTATAGAAAAGCA  784

seq1  AGTATATCTGATAAATAAATTTAGTGCAGCAAAATTAAGAAGAGTATGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCTGATAAATAAATTTAGTGCAGCAAAATTAAGAAGAGTATGGC  834

seq1  AACAGGATTGATAAGCATGTCAGTGATTACATCGTCAAAGATAACAGCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATTGATAAGCATGTCAGTGATTACATCGTCAAAGATAACAGCAT  884

seq1  GCACTTAGAGATGTAAATGAAACAATGATTTGGAGTTTATGAGAAGCACG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAGAGATGTAAATGAAACAATGATTTGGAGTTTATGAGAAGCACG  934

seq1  AAGAATTGAAATGCCAAAAAATAATTCTGTATTCCATTAAATAGTGAGTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGAAATGCCAAAAAATAATTCTGTATTCCATTAAATAGTGAGTA  984

seq1  TAACCTCCCATCCTTGATTCTAAGATGGCTGTGGTGTCTTGTTTCTTTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCCCATCCTTGATTCTAAGATGGCTGTGGTGTCTTGTTTCTTTTG  1034

seq1  CATACACTGAAGTGATGCTCTTAAATAAGAACAGGTCAGGAAAAGCCATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTGAAGTGATGCTCTTAAATAAGAACAGGTCAGGAAAAGCCATG  1084

seq1  TAACTTCTGCCCACAGATACCTTGGAACGTACCAGTGATCATGTAAGAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTGCCCACAGATACCTTGGAACGTACCAGTGATCATGTAAGAAA  1134

seq1  AATGTCTGCTCCAGGACCTATGATAATAGAGAATTC  1181
      ||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCTCCAGGACCTATGATAATAGAGAATTC  1170


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