BAC Information

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BAC

Clone NameB6Ng01-212L22
Chromosome12 (Build37)
Map Location 33,938,378 - 34,042,487
singlet/doubletdoublet
Overlap geneAtxn7l1
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
Downstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212L22.bB6Ng01-212L22.g
ACCGA030466GA030467
length996921
definitionB6Ng01-212L22.b B6Ng01-212L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,041,510 - 34,042,487)(33,938,378 - 33,939,301)
sequence
gaattctctatgtaaaccaagctgacttcaaacacacagagatctgcctg
cctgtgctgcagagtgcctggattaaagacatgcaccacctagcccagca
aaatgcaaaacatgtaacataggctgggcttgaactcatggtcttacttg
cctatgcctcttcagcaaatcccaagtggcaagtgccacaacaagcagct
attttcacttttgcaagaagtctttacaagtgaaaagtcagggtctatat
atgtcaaaggacactaacaagaatacactacaaataaaattgtaacacac
taatataacaactgttaaaattaggttaggtaagtattcatcaatatatc
attgctttccagcatgtaggggaattttcataacaaacactgaaaacaga
aacaaaaaaagagctagcagtatccatatgcctaagaaagagactgaaag
agttctgttttggtttcattttttcccctgttttacagatatacattaca
ataatgggtctcatgtagcccaggctggccttgaatttgttatgtcatgg
agaatgaccacgaatgttcttgtgctacctcccaagtgacaagaggccag
gcctgggccaccacatgcagctaatctatgtacatcttgttaattaatca
agttagttaaaaaattaacatatccatcatttcttagagttatatttcta
ccacctaccaggagttgaactcggggctttttgctagctagagaagtatt
ccaccactaactggaactcttttacagttttattttgggacagagtctta
tcaagttactcaggctggccttgaactcactcttgagcacagtgccctct
tttttttgggggggggggggttacagttgaactattagatcttgtaacac
tgtccttatcaatttagaagttgccatttggggcatggcaccccctcata
aactcactctggatcctggatcctaaacctgttcctggcttcctgt
gaattcctggtgagagaggcggcggtgagggggagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
atatgaatcgcttagacctgaaacatctgagttacagcgtcactcagccc
agaagaggagatgctaagacgtggttaccacagtctttccgaatggtgca
ccagcgccatagctaaggtgagggagctttgtcgagatatttgccctttc
agtgaacaggaattgagattaatttggccttgagaattttaaatgcacac
attgtaatcattggctgtaccctagagcattgtaaaatcagggttggaaa
tcttttaacatctacagtctgagagcaggaactcagtcttgcaagcacat
tttttttaaaactcccgagcccagggaagaaagtgtctgcctgtcagatt
tgcatttagtgccttctccttggtgatgcctcatgccccaatgcttttct
ccactcactgtgagctggcaggagtcctttgcaagcctggttacttttac
aaacacaattcttgagagaacccaggacagaagaacatattgctcacctg
tgcccagttaggtctaacttctgagattcctccctggttgttttagggtc
tttctttgcccacatcactaaatcctgtaataaaaatttgaaaataattt
cggtatcctattgaatttgaaaagcaccttgagtgatgcactttttttct
tttcttttttctttctttttttatgaattcccattttggaattctttgtc
tccctccaccaatcagaaatccaccccctacatgtgtagttttttcagtg
gtaaaatgccttacctttctaggatgatacacccacttggttttctttac
tttgtgaatgccatgctcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34041510_34042487
seq2: B6Ng01-212L22.b_54_1049 (reverse)

seq1  ACAGG-AGCCAGG-ACAGGTCTAGG-TCCAGG-TCCAGAGTGAG-TTAT-  44
      ||||| ||||||| |||||| |||| |||||| ||||||||||| |||| 
seq2  ACAGGAAGCCAGGAACAGGTTTAGGATCCAGGATCCAGAGTGAGTTTATG  50

seq1  -GGGGGTGCAATGCCC--AATGGCAAC-TCT-AATTGATAA-GACCGTGT  88
       |||||||| ||||||  ||||||||| ||| ||||||||| ||| ||||
seq2  AGGGGGTGCCATGCCCCAAATGGCAACTTCTAAATTGATAAGGACAGTGT  100

seq1  TAC-AGATCTAATGGT--CACTGTAACCCCCCCCCCC---AAAAAAAGAG  132
      ||| ||||||||| ||   ||||||||||||||||||   ||||||||||
seq2  TACAAGATCTAATAGTTCAACTGTAACCCCCCCCCCCCCAAAAAAAAGAG  150

seq1  GGCACTGTGCTCAAGAGTGAGTTCAAGGCCAGCCTGAGTAACTTGATAAG  182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTGCTCAAGAGTGAGTTCAAGGCCAGCCTGAGTAACTTGATAAG  200

seq1  ACTCTGTCCCAAAATAAAACTGTAAAAGAGTTCCAGTTAGTGGTGGAATA  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCCCAAAATAAAACTGTAAAAGAGTTCCAGTTAGTGGTGGAATA  250

seq1  CTTCTCTAGCTAGCAAAAAGCCCCGAGTTCAACTCCTGGTAGGTGGTAGA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAGCTAGCAAAAAGCCCCGAGTTCAACTCCTGGTAGGTGGTAGA  300

seq1  AATATAACTCTAAGAAATGATGGATATGTTAATTTTTTAACTAACTTGAT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACTCTAAGAAATGATGGATATGTTAATTTTTTAACTAACTTGAT  350

seq1  TAATTAACAAGATGTACATAGATTAGCTGCATGTGGTGGCCCAGGCCTGG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACAAGATGTACATAGATTAGCTGCATGTGGTGGCCCAGGCCTGG  400

seq1  CCTCTTGTCACTTGGGAGGTAGCACAAGAACATTCGTGGTCATTCTCCAT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTCACTTGGGAGGTAGCACAAGAACATTCGTGGTCATTCTCCAT  450

seq1  GACATAACAAATTCAAGGCCAGCCTGGGCTACATGAGACCCATTATTGTA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAACAAATTCAAGGCCAGCCTGGGCTACATGAGACCCATTATTGTA  500

seq1  ATGTATATCTGTAAAACAGGGGAAAAAATGAAACCAAAACAGAACTCTTT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATCTGTAAAACAGGGGAAAAAATGAAACCAAAACAGAACTCTTT  550

seq1  CAGTCTCTTTCTTAGGCATATGGATACTGCTAGCTCTTTTTTTGTTTCTG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTTTCTTAGGCATATGGATACTGCTAGCTCTTTTTTTGTTTCTG  600

seq1  TTTTCAGTGTTTGTTATGAAAATTCCCCTACATGCTGGAAAGCAATGATA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGTTTGTTATGAAAATTCCCCTACATGCTGGAAAGCAATGATA  650

seq1  TATTGATGAATACTTACCTAACCTAATTTTAACAGTTGTTATATTAGTGT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGAATACTTACCTAACCTAATTTTAACAGTTGTTATATTAGTGT  700

seq1  GTTACAATTTTATTTGTAGTGTATTCTTGTTAGTGTCCTTTGACATATAT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAATTTTATTTGTAGTGTATTCTTGTTAGTGTCCTTTGACATATAT  750

seq1  AGACCCTGACTTTTCACTTGTAAAGACTTCTTGCAAAAGTGAAAATAGCT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGACTTTTCACTTGTAAAGACTTCTTGCAAAAGTGAAAATAGCT  800

seq1  GCTTGTTGTGGCACTTGCCACTTGGGATTTGCTGAAGAGGCATAGGCAAG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTGTGGCACTTGCCACTTGGGATTTGCTGAAGAGGCATAGGCAAG  850

seq1  TAAGACCATGAGTTCAAGCCCAGCCTATGTTACATGTTTTGCATTTTGCT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCATGAGTTCAAGCCCAGCCTATGTTACATGTTTTGCATTTTGCT  900

seq1  GGGCTAGGTGGTGCATGTCTTTAATCCAGGCACTCTGCAGCACAGGCAGG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGTGGTGCATGTCTTTAATCCAGGCACTCTGCAGCACAGGCAGG  950

seq1  CAGATCTCTGTGTGTTTGAAGTCAGCTTGGTTTACATAGAGAATTC  978
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGTGTGTTTGAAGTCAGCTTGGTTTACATAGAGAATTC  996

seq1: chr12_33938378_33939301
seq2: B6Ng01-212L22.g_68_988

seq1  GAATTCCTGGTGAGAGAGGCGGCGGTGAGGGGGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||      ||||||||||||
seq2  GAATTCCTGGTGAGAGAGGCGGCGGTGAGGGG------GAGAGAGAGAGA  44

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  94

seq1  GAGAGAATATGAATCGCTTAGACCTGAAACATCTGAGTTACAGCGTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATATGAATCGCTTAGACCTGAAACATCTGAGTTACAGCGTCACT  144

seq1  CAGCCCAGAAGAGGAGATGCTAAGACGTGGTTACCACAGTCTTTCCGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAAGAGGAGATGCTAAGACGTGGTTACCACAGTCTTTCCGAAT  194

seq1  GGTGCACCAGCGCCATAGCTAAGGTGAGGGAGCTTTGTCGAGATATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACCAGCGCCATAGCTAAGGTGAGGGAGCTTTGTCGAGATATTTGC  244

seq1  CCTTTCAGTGAACAGGAATTGAGATTAATTTGGCCTTGAGAATTTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGTGAACAGGAATTGAGATTAATTTGGCCTTGAGAATTTTAAAT  294

seq1  GCACACATTGTAATCATTGGCTGTACCCTAGAGCATTGTAAAATCAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATTGTAATCATTGGCTGTACCCTAGAGCATTGTAAAATCAGGGT  344

seq1  TGGAAATCTTTTAACATCTACAGTCTGAGAGCAGGAACTCAGTCTTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTTTTAACATCTACAGTCTGAGAGCAGGAACTCAGTCTTGCAA  394

seq1  GCACATTTTTTTTAAAACTCCCGAGCCCAGGGAAGAAAGTGTCTGCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTTTTTAAAACTCCCGAGCCCAGGGAAGAAAGTGTCTGCCTGT  444

seq1  CAGATTTGCATTTAGTGCCTTCTCCTTGGTGATGCCTCATGCCCCAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGCATTTAGTGCCTTCTCCTTGGTGATGCCTCATGCCCCAATGC  494

seq1  -TTTCTCCACTCACTGTGAGCTGGCAGGAGTCC-TTGCAAGCCTGGTTAC  548
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTCTCCACTCACTGTGAGCTGGCAGGAGTCCTTTGCAAGCCTGGTTAC  544

seq1  TTTTACAAACACAATTCTTGAGAGAACCCAGGACAGAAGAACATATTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAACACAATTCTTGAGAGAACCCAGGACAGAAGAACATATTGCT  594

seq1  CACCTGTGCCCAGTTAGGCCTAACTTCTGAGATTCCTCCCTGGTTGTTTT  648
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACCTGTGCCCAGTTAGGTCTAACTTCTGAGATTCCTCCCTGGTTGTTTT  644

seq1  AGGGTCTTTC-TTGCCCACATCACT-AATCCTGTAATAAAAATTTGAAAA  696
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AGGGTCTTTCTTTGCCCACATCACTAAATCCTGTAATAAAAATTTGAAAA  694

seq1  TAATTTCGGTATCCTATTGAATTTGAAAAGCACCTTGAGTGATGCACTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCGGTATCCTATTGAATTTGAAAAGCACCTTGAGTGATGCACTTT  744

seq1  TTTTCTTTTTCTTTTTTTCTTTTCTTTTTTTATTGAATTCCCATTTTGGA  796
      ||||| |||||||||||   |||||||||||| |||||||||||||||||
seq2  TTTTC-TTTTCTTTTTT--CTTTCTTTTTTTA-TGAATTCCCATTTTGGA  790

seq1  ATTCTTTGTCTCCCTCCACCAATCAG-AATCCACCCCCTACATGTGTAG-  844
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  ATTCTTTGTCTCCCTCCACCAATCAGAAATCCACCCCCTACATGTGTAGT  840

seq1  TTTTTCAGTGGTAAAATGCC-TACC-TTCTAGGATGATACAACCCACTT-  891
      |||||||||||||||||||| |||| |||||||||||||| |||||||| 
seq2  TTTTTCAGTGGTAAAATGCCTTACCTTTCTAGGATGATAC-ACCCACTTG  889

seq1  GTTTTCTTTACTTTGTGAATGCCATTGCTCAGT  924
      |||||||||||||||||||||||| ||||||||
seq2  GTTTTCTTTACTTTGTGAATGCCA-TGCTCAGT  921