BAC Information

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BAC

Clone NameB6Ng01-213G02
Chromosome12 (Build37)
Map Location 103,468,119 - 103,614,187
singlet/doubletdoublet
Overlap geneSlc24a4, Rin3
Upstream gene4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
Downstream geneLgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213G02.bB6Ng01-213G02.g
ACCGA030926GA030927
length1,009651
definitionB6Ng01-213G02.b B6Ng01-213G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,468,119 - 103,469,111)(103,613,536 - 103,614,187)
sequence
gaattcccccgactatctttcttcttagtgaacagccagcagagagacct
agagatggagaaccacggaggtagatggtcaccaaacagcccgcttgaga
aacagttgcttcctgggaagggaaagcatgggggtgctgcctcctttgag
cctgctctgaacattgagctggcttgcctttattaggatacgcttgtaag
gagcattaagcacattgtctgggaggccctctgacacccccaggaggaca
ttccgagctcagcagaagcaagggcctcaggctgcacaagatcccagagg
tctcgccaagaaacccctcaagctcagttagagagcctccctggctaccc
ttcatgtccagcgccattttgactggtgctccacccacctggtaggatag
gactccctcctcctcccctgctctaacctcctgccttacctgactcacag
gtacaatatgaagatgcagacatttttcacaaccaaacaaaagagcattg
ccaatggtaacccggtcagcaacgagctggaagatggtaatgacctctat
gatggtagctatgacgacccttctgtgccattgctggggcaaggtaaggc
tgagcagactggagctgtggacccttgtggaagacctacacacacatatt
gcaacacacacatacacagacacacacacacacacactcattgatgtcat
atacaccccctaatgaggagaggagaccgaccttggacatgctggacaca
ttgatattcacttacatgagaaaggatactagagaaagccccctaaaaca
aaacaaaagaagatgtctttcatctaaagaaaaaaattcatttctctcca
ctgggcacgtgggaaagcttggttgactttagagatgcactgctgtcctc
tgccccagaaaagagccccaaacagggacgctgagatgacatggcctagg
cctctctgacctctccagcaccagggatctggtccttgagaaatacggcc
ttggaaact
gaattcatggttatgaatgctcacagtggctgggtgtccctccctgtgcc
tggcttacatttcatggacttaaaactggaacttgaaaaatgaaatagcc
ctgtttctaccctattcagcatattccttggctctgcctttgccctgagt
cctgcaaggcctgtgagaaatgattctgcagttagacatagccatgggtc
acacgcaccttctacaagtgtgagcatctggtgacacactaaccacagtc
cacctgagccccacagactgcacctgtttacacaggaggaaactgagcct
ggtgcctccattacccgaatagtcaggctagatgcataaaagctcggata
gacattctggtctagtttttcatgtcctcccctttctgactttaccaaat
tgcactgtttcccccccacctccccatgcaggacaccctaggcctgccac
ccttgttactgttttagaagaaaaggcttgcctctttcctggtttgtttc
cttcatcaataatggggcccctggccttcaaggtctcactggggctgtca
tgcattcttgataccctctcctgggtttaagactctggatctggctgtgc
tgccatacatacatgagaataaggctttgaattgtgaaggctgcctacag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103468119_103469111
seq2: B6Ng01-213G02.b_40_1039

seq1  CGACTATCTTTCTTCTTAGTGAACAGCCAACAGAGAGACCTAGAGATGGA  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CGACTATCTTTCTTCTTAGTGAACAGCCAGCAGAGAGACCTAGAGATGGA  50

seq1  GAACCACAGGAGGTAGATGGTCACCAAACAGCCCGCTTGAGAAACAGTTG  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAC-GGAGGTAGATGGTCACCAAACAGCCCGCTTGAGAAACAGTTG  99

seq1  CTTCCTGGGAAGGGAAAGCATGGGGGTGCTGCCTCCTTTGAGCCTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGGAAGGGAAAGCATGGGGGTGCTGCCTCCTTTGAGCCTGCTCT  149

seq1  GAAGATTGAGCTGGCTTGCCTTTATTAGGATACGCTTGTAAGGAGCATTA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGAGCTGGCTTGCCTTTATTAGGATACGCTTGTAAGGAGCATTA  199

seq1  AGCACATTGTCTGGGAGGCCCTCTGACACCCCCAGGAGGACATTCCGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTGTCTGGGAGGCCCTCTGACACCCCCAGGAGGACATTCCGAGC  249

seq1  TCAGCAGAAGCAAGGGCCTCAGGCTGCACAAGATCCCAGAGGTCTCGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAAGCAAGGGCCTCAGGCTGCACAAGATCCCAGAGGTCTCGCCA  299

seq1  AGAAACCCCTCAAGCTCAGTTAGAGAGCCTCCCTGGCTACCCTTCATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCCTCAAGCTCAGTTAGAGAGCCTCCCTGGCTACCCTTCATGTC  349

seq1  CAGTGCCATTTTGACTGGTGCTCCACCCACCTGGTAGGATAGGACTCCCT  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCATTTTGACTGGTGCTCCACCCACCTGGTAGGATAGGACTCCCT  399

seq1  CCTCCTCCCCAGCTCTAACCTCCTGCCTTACCTGACTCACAGGTACAATA  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCCTGCTCTAACCTCCTGCCTTACCTGACTCACAGGTACAATA  449

seq1  TGAAGATGCAGACATTTTTCACAACCAAACAAAAGAGCATTGCAAATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAAGATGCAGACATTTTTCACAACCAAACAAAAGAGCATTGCCAATGGT  499

seq1  AACCCGGTCAGCAACGAGCTGGAAGATGGTAATGACCTCTATGATGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGGTCAGCAACGAGCTGGAAGATGGTAATGACCTCTATGATGGTAG  549

seq1  CTATGACGACCCTTCTGTGCCATTGCTGGGGCAAGGTAAGGCTGAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACGACCCTTCTGTGCCATTGCTGGGGCAAGGTAAGGCTGAGCAGA  599

seq1  CAGGAGCTGTGGACCCTTGTGGAAGACCCACACACACATATCACACCACA  650
      | |||||||||||||||||||||||||| ||||||||||||  || ||||
seq2  CTGGAGCTGTGGACCCTTGTGGAAGACCTACACACACATATTGCAACACA  649

seq1  CACACACACACACACACACACACACACACACACTGATGTCATATACACCC  700
      |||| ||||| |||||||||||||||||| || |||||||||||||||||
seq2  CACATACACAGACACACACACACACACACTCATTGATGTCATATACACCC  699

seq1  CCAAATGAGGAGAGGAGACCCACATTGGAGATGCTGGTCAGATTGACATT  750
      || ||||||||||||||||| || ||||| ||||||| || ||||| |||
seq2  CCTAATGAGGAGAGGAGACCGACCTTGGACATGCTGGACACATTGATATT  749

seq1  CACTTAGATGAGAAAGGATAAAAGAGAAAGTCCCCTAAAAACAAAAC-AA  799
      |||||| |||||||||||||  |||||||| ||||| |||||||||| ||
seq2  CACTTACATGAGAAAGGATACTAGAGAAAGCCCCCT-AAAACAAAACAAA  798

seq1  AGAACATGAATTTCATCAAAGAAAAAAAATTCA-TTCT-TCCA-GGGGCA  846
      |||| |||  ||||||| ||  ||||||||||| |||| ||||  |||||
seq2  AGAAGATGTCTTTCATCTAAAGAAAAAAATTCATTTCTCTCCACTGGGCA  848

seq1  GGTGGG-AAGCTTGGTTGACTTTAGAGATGCAGTGTTGT-CTCTGCCCAA  894
       ||||| ||||||||||||||||||||||||| || ||| |||||||| |
seq2  CGTGGGAAAGCTTGGTTGACTTTAGAGATGCACTGCTGTCCTCTGCCCCA  898

seq1  GAGAAGAGCCCCAAACA-GGAAGCTGAAGTGACAGTGCCTAGGCCTCTCT  943
      || |||||||||||||| ||| |||||  |||||  ||||||||||||||
seq2  GAAAAGAGCCCCAAACAGGGACGCTGAGATGACATGGCCTAGGCCTCTCT  948

seq1  GTACCTCTCCAGCACCA-GGCTCT-GTCCTTGAGAAATCCGTCC-TGGAA  990
      | ||||||||||||||| || ||| ||||||||||||| || || |||||
seq2  G-ACCTCTCCAGCACCAGGGATCTGGTCCTTGAGAAATACGGCCTTGGAA  997

seq1  ACT  993
      |||
seq2  ACT  1000

seq1: chr12_103613536_103614187
seq2: B6Ng01-213G02.g_67_717 (reverse)

seq1  ACTGTAGGCAGCCTCCACAATTCAAAGCCTTATTCTCATTTATGTCTGGC  50
      |||||||||||||| |||||||||||||||||||||||| ||||| ||||
seq2  ACTGTAGGCAGCCTTCACAATTCAAAGCCTTATTCTCATGTATGTATGGC  50

seq1  AGCACAGCCAGCTCCAGAGTCCTAGGACCCAGGAGAGGGTATCCAGAATG  100
      ||||||||||| ||||||||| ||  ||||||||||||||||| ||||||
seq2  AGCACAGCCAGATCCAGAGTCTTA-AACCCAGGAGAGGGTATCAAGAATG  99

seq1  CCTGACAGCCCCAGTGAGACCTTGAAGGCCAGGGGCCCCATTATTGCTGA  150
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATGACAGCCCCAGTGAGACCTTGAAGGCCAGGGGCCCCATTATTGATGA  149

seq1  TGGAAACAAACCAGGAACGTGGCAAGCCTTCTCTTCTAAAACAGTAACAA  200
       |||||||||||||||| | |||||||||| |||||||||||||||||||
seq2  AGGAAACAAACCAGGAAAGAGGCAAGCCTTTTCTTCTAAAACAGTAACAA  199

seq1  GGGTGGCAGGCCTAGGGTGTCCTGCATGGGGAGGTGGGGGGGAAGCAGTG  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGTGGCAGGCCTAGGGTGTCCTGCATGGGGAGGTGGGGGGGAAACAGTG  249

seq1  CAATTTGGTAAAGTCAGAAAGGGGAGGACATGAAAAACTAGACCCGAATG  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAATTTGGTAAAGTCAGAAAGGGGAGGACATGAAAAACTAGACCAGAATG  299

seq1  TCTATCCGAGCTCTTATGCATCTAGCCTGACTATCCGGGTAATGGAGGCA  350
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TCTATCCGAGCTTTTATGCATCTAGCCTGACTATTCGGGTAATGGAGGCA  349

seq1  CCAGGCTCAGTTTCCTCCTGTGTAAACAGGTGCAGTCTCTGGGGCTCAGG  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAGGCTCAGTTTCCTCCTGTGTAAACAGGTGCAGTCTGTGGGGCTCAGG  399

seq1  TGGACTGTGGTTAGTGTGTCACCAGATGCTCACACTTGCTGACTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||  ||  ||| ||
seq2  TGGACTGTGGTTAGTGTGTCACCAGATGCTCACACTTGTAGAAGGTGCGT  449

seq1  GTGACCCATGGCTATGTCTAACTGCAGAATCATTTCTCACAGGCCTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCATGGCTATGTCTAACTGCAGAATCATTTCTCACAGGCCTTGCA  499

seq1  GGACTCAGGGCAAAGGCAGAGCCAAGGACTCTGCTGACTAGGGTAGAAAC  550
      |||||||||||||||||||||||||||| | |||||| ||||||||||||
seq2  GGACTCAGGGCAAAGGCAGAGCCAAGGAATATGCTGAATAGGGTAGAAAC  549

seq1  AGGGCTATTTCATTCTCCAAGTTCCAGTTTTAAGACCATGAAATATAAGC  600
      |||||||||||||| | ||||||||||||||||| ||||||||| |||||
seq2  AGGGCTATTTCATTTTTCAAGTTCCAGTTTTAAGTCCATGAAATGTAAGC  599

seq1  CAGGCACAGGGAGGGACACCCAGACACTGTGAGCATTCTTAACCATGAAT  650
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  CAGGCACAGGGAGGGACACCCAGCCACTGTGAGCATTCATAACCATGAAT  649

seq1  TC  652
      ||
seq2  TC  651