BAC Information

Click to search

BAC

Clone NameB6Ng01-213I16
Chromosome12 (Build37)
Map Location 4,597,575 - 4,598,648
singlet/doubletsinglet
Overlap geneLOC100042014
Upstream geneDtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005
Downstream geneItsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213I16.bB6Ng01-213I16.g
ACCGA031033GA031034
length1,0141,070
definitionB6Ng01-213I16.b B6Ng01-213I16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctattttcttttttttttttttccattttttattaggtatttc
tcatttacatttccaatgctataccaaaagtcccccatatccacccaccc
ccactcccctgcccacccactccccctttttggccctggtattcccctgt
actggggcatataaagtttgcaagtccaatgggcctctctttccagtgat
ggccgactaggccatcttttgatatatatgcagctagagtcaagagctcc
ggggtactggttagctcataatgttgttccacctatagggttgcagatcc
ctttagctccttggctactttctctagctcctccattgggagccctatga
tccatccattagctgactgtgagcatccacttctgtgtttgctgggcccc
ggcatagtctcacaagagacagctacatctgcgtcctttcaataaaatct
tgctagtgtatgcaatggtgtcagcgtttggatgctgattatggggtgga
tccctggctatggcagtctctacatggtccatcctttcatctcagctcca
aactccgtctctgtaactccttccatgggtgttttgttcccaaatctaag
gaggggcatagtgtccacacttcagtcttcattctccttgagtttcatgt
gtttagcaaattatatcttatgtcttgggtatcctaggtttggggctaat
atccacttatcagtgaatacatattgtgtgagtttctttgtgaatgtgtt
acctcactcaggatgatgcctctccaggtccatccatttggctaggattt
tcataaattcattctttttaatagctgagtagtactccattgtgtagatg
taccacattttctgtatccattcctctgttgaggggcatctaggttcttt
ccagccttctggctattataaataagggctgctatgaacatagtggagca
tgtgttcttctttacttgtggggcatcttctggatattattgcccaggag
aaggtattgcctgg
gaattcacaggtagagtttcaagaccagcccatgaatggaggaatgaact
gggagggttgctacatcacctacctgaatcataaattcctaaagactgag
gatgacgagaattctgggtggagagaaatgactgactatttcaggtgctg
aagtttttgctggacactgagtgctctggtatttggctaaagaagacaca
aggagagaagaagggttttgcaagcctaaaaacaaaaatcaaaaacgaca
aaaaggactgtttttgcataagtagggaaagaaagatctaaaggcagcaa
gaacatttcttgggttgcttctgtgtttgccagcctccaaaattccattt
agcttgctgaacagaaagaactactgttagcaaggcctgcccagcaatct
gagaatccttcatttcttttcttccctcattacttatatccactaagtaa
gtccagatttattccagaatcgcatatgtatgtataagagaagctaggct
agaggaggccctcatactctacattgtgacaggatagattgatctcaagt
tctgaatagaaactggaattatcagcacttgggagacaaaggcaggcaga
tcactgtgactctgaggccagcctggtctacaaagagagttctaagacag
ccaaggctatacagagagaccatcccccccccccaaaaaaaaaccctaaa
accaaacaaaaaaaatcccaagttgttgacttagtgtttgggatactgca
ggcagacatacagaactccaatttctgatagctctgcagtttcttcaagg
gaggcctttaaatgcacctgcgtcccaccgccctcctctcaaggatccag
caacctcaacagaaagaaggcaaggtgaatgttaccaagtcccgaacacc
aaaatgcagcccagggcctattgaagagttagataacacccgttgagagc
agaaaccctgtttatcaccatcatgtttgctaaattccttcctagagttg
gttgtcagttcagttgcccttgagcatctccgcaatctcttctagtcaga
cttttctatctgcatcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_4597575_4598648
seq2: B6Ng01-213I16.g_66_1135

seq1  GAATTCACAGGTAGAGTTTCAAGACCAGCCCATGAATGGAGGAATGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTAGAGTTTCAAGACCAGCCCATGAATGGAGGAATGAACT  50

seq1  GGGAGGGTTGCTACATCACCTACCTGAATCATAAATTCCTAAAGACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTTGCTACATCACCTACCTGAATCATAAATTCCTAAAGACTGAG  100

seq1  GATGACGAGAATTCTGGGTGGAGAGAAATGACTGACTATTTCAGGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACGAGAATTCTGGGTGGAGAGAAATGACTGACTATTTCAGGTGCTG  150

seq1  AAGTTTTTGCTGGACACTGAGTGCTCTGGTATTTGGCTAAAGAAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTGCTGGACACTGAGTGCTCTGGTATTTGGCTAAAGAAGACACA  200

seq1  AGGAGAGAAGAAGGGTTTTGCAAGCCTAAAAACAAAAATCAAAAACGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAGAAGGGTTTTGCAAGCCTAAAAACAAAAATCAAAAACGACA  250

seq1  AAAAGGACTGTTTTTGCATAAGTAGGGAAAGAAAGATCTAAAGGCAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACTGTTTTTGCATAAGTAGGGAAAGAAAGATCTAAAGGCAGCAA  300

seq1  GAACATTTCTTGGGTTGCTTCTGTGTTTGCCAGCCTCCAAAATTCCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTCTTGGGTTGCTTCTGTGTTTGCCAGCCTCCAAAATTCCATTT  350

seq1  AGCTTGCTGAACAGAAAGAACTACTGTTAGCAAGGCCTGCCCAGCAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTGAACAGAAAGAACTACTGTTAGCAAGGCCTGCCCAGCAATCT  400

seq1  GAGAATCCTTCATTTCTTTTCTTCCCTCATTACTTATATCCACTAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCTTCATTTCTTTTCTTCCCTCATTACTTATATCCACTAAGTAA  450

seq1  GTCCAGATTTATTCCAGAATCGCATATGTATGTATAAGAGAAGCTAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATTTATTCCAGAATCGCATATGTATGTATAAGAGAAGCTAGGCT  500

seq1  AGAGGAGGCCCTCATACTCTACATTGTGACAGGATAGATTGATCTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGCCCTCATACTCTACATTGTGACAGGATAGATTGATCTCAAGT  550

seq1  TCTGAATAGAAACTGGAATTATCAGCACTTGGGAGACAAAGGCAGGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAGAAACTGGAATTATCAGCACTTGGGAGACAAAGGCAGGCAGA  600

seq1  TCACTGTGACTCTGAGGCCAGCCTGGTCTACAAAGAGAGTTCTAAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGACTCTGAGGCCAGCCTGGTCTACAAAGAGAGTTCTAAGACAG  650

seq1  CCAAGGCTATACAGAGAGACCATCCCCCCCCCCCAAAAAAAAACCCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTATACAGAGAGACCATCCCCCCCCCCCAAAAAAAAACCCTAAA  700

seq1  ACCAAACAAAAAAAATCCCAAGTTGTTGACTTAGTGTTTGGGATACTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAAAAAAATCCCAAGTTGTTGACTTAGTGTTTGGGATACTGCA  750

seq1  GGCAGACATACAGAACTCCAATTTCTGATAGCTCTGCAGTTTCTTCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACATACAGAACTCCAATTTCTGATAGCTCTGCAGTTTCTTCAAGG  800

seq1  GAGGCCTTTAAATGCACCTGCGTCCCACCGCCCTCCTCTCAAGGATCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTTAAATGCACCTGCGTCCCACCGCCCTCCTCTCAAGGATCCAG  850

seq1  CAACCTCAACAGAAAGAAGGCAAGGTGAATGTTACCAAGTCCCGAACACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCAACAGAAAGAAGGCAAGGTGAATGTTACCAAGTCCCGAACACC  900

seq1  AAAATGCAAGCCAAGGGCTAATTGAAGAGTTAAGAAAACACC--GTGAGA  948
      ||||||| |||| |||||  ||||||||||| ||| ||||||   |||||
seq2  AAAATGC-AGCCCAGGGCCTATTGAAGAGTT-AGATAACACCCGTTGAGA  948

seq1  GCAAGAAAACCCTGTTTATCACCATCAATGTTTGCTAAATTCCTCCTAAG  998
      |||   |||||||||||||||||||| ||||||||||||||||| |  ||
seq2  GCA--GAAACCCTGTTTATCACCATC-ATGTTTGCTAAATTCCTTCCTAG  995

seq1  AGTTGGTTGTCCAGTTCAGTTGGCCCTGAGCATCTCCGCAATCTCTTTCA  1048
      |||||||||| ||||||||||| || ||||||||||||||||||| ||| 
seq2  AGTTGGTTGT-CAGTTCAGTTGCCCTTGAGCATCTCCGCAATCTC-TTCT  1043

seq1  AGTCAGAC-TTTCTATCTGCATCAGCC  1074
      |||||||| ||||||||||||||||||
seq2  AGTCAGACTTTTCTATCTGCATCAGCC  1070