BAC Information

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BAC

Clone NameB6Ng01-214E13
Chromosome12 (Build37)
Map Location 48,513,880 - 48,654,754
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664952, Nova1, LOC100039190
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214E13.bB6Ng01-214E13.g
ACCGA031574GA031575
length3791,136
definitionB6Ng01-214E13.b B6Ng01-214E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,513,880 - 48,514,264)(48,653,620 - 48,654,754)
sequence
acagtactccatcctgccatggccttcaaggttgtaggatttcaggcatt
agccggattttcatcttttaaaacctacaactttatttctgtgatctatt
tgtgaaaaatattagagaaatatattactttttgccatgttcgcaatata
ttcaaattcagaaatattgggattcttttaattttctaaagattaatctg
acagttatggaattttcacaattaaataacaaatatttatatgtaaagat
tatgcattttccatcaaggtaactaagaatatgtattgggtttttgtacc
aaagtttagccaatgcaagaacccgctgcaaatttaagtacctcagttga
cagtctatagtcgggggggggggtggata

gaattctttgttcagttctgagccccattttttaatggggttattcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagccttggagtttca
tgatgtcccatttgtcaattctcgatcttatagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctatatgtttcagtatctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagatggacttacatattcttaa
ttaaggttttaagtttgaaaaaaaggggtaaataaattgcttttagagat
gctgacagttttccaacattgaaaacatacagcagatgtgtaaatgtgaa
agacatgtagcatttacccataataatacttaaacatattattgcagaaa
ccaaagacgtggcatgcttgaaagtatctaaaagacagacatattagaaa
gaattgcaatcaaaaaaaaatcatctcaaaggaaaatgtgtatgtttgaa
tttatttgtttaagtttgtaaaaggatatcactaaccacccacactgttt
ttttggaccctttctcctgtctactctcataagccctgagattacaggct
ttggttaacactgctatgtaagcttattactacaaatagaaagaaactaa
gttttcattagaaaataaaaatatgtaatctggagtccatactatctcaa
actcacttttgcatctctaaaataactagaaaaaacaatagcagttctta
tgtagttgacatctatgtgcaaatattagtcatgtatacacggtactgaa
tttttttcagcaagctcatgtacctcaagagttatttctttgaggagggt
gaggttataaatggtcagccaagaaacagatttactgttttacttcccta
cattgcccaaggaaaatggggccaatggcagtagaacttgtttctgtcag
gctggccaccctccaccaaacttgataacagaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48513880_48514264
seq2: B6Ng01-214E13.b_51_435

seq1  GAATTCACAGTACTCCATCCTGCCATGGCCTTCAAGGTTGTAGGATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTACTCCATCCTGCCATGGCCTTCAAGGTTGTAGGATTTCA  50

seq1  GGCATTAGCCGGATTTTCATCTTTTAAAACCTACAACTTTATTTCTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGCCGGATTTTCATCTTTTAAAACCTACAACTTTATTTCTGTGA  100

seq1  TCTATTTGTGAAAAATATTAGAGAAATATATTACTTTTTGCCATGTTCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGTGAAAAATATTAGAGAAATATATTACTTTTTGCCATGTTCGC  150

seq1  AATATATTCAAATTCAGAAATATTGGGATTCTTTTAATTTTCTAAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTCAAATTCAGAAATATTGGGATTCTTTTAATTTTCTAAAGATT  200

seq1  AATCTGACAGTTATGGAATTTTCACAATTAAATAACAAATATTTATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGACAGTTATGGAATTTTCACAATTAAATAACAAATATTTATATGT  250

seq1  AAAGATTATGCATTTTCCATCAAGGTAACTAAGAATATGTATTGGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTATGCATTTTCCATCAAGGTAACTAAGAATATGTATTGGGTTTT  300

seq1  TGTACCAAAGTTTAGCCAATGCAAGAACCCGCTGCAAATTTAAGTACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAAAGTTTAGCCAATGCAAGAACCCGCTGCAAATTTAAGTACCTC  350

seq1  AGTTGACAGTCTATAGTCGGGGGGGGGGGTGGATA  385
      |||||||||||||||||||||||||||||||||||
seq2  AGTTGACAGTCTATAGTCGGGGGGGGGGGTGGATA  385


seq1: chr12_48653620_48654754
seq2: B6Ng01-214E13.g_64_1199 (reverse)

seq1  ATCTTCTGTTATCAGTGTTGGGTGGA-GGTGGCCAGCCTGACCAGAACA-  48
      ||||||||||||||  ||| |||||| |||||||||||||||   |||| 
seq2  ATCTTCTGTTATCA-AGTTTGGTGGAGGGTGGCCAGCCTGACAGAAACAA  49

seq1  -GTCTACTGCCAT--GGCCCATTTTCCTTGGGCAATGT--GGGAGTAAAA  93
        |||||||||||  | |||||||||||||||||||||  || |||||||
seq2  GTTCTACTGCCATTGGCCCCATTTTCCTTGGGCAATGTAGGGAAGTAAAA  99

seq1  CAGTAAATCCTGTTTCTTGGCTGACCCTTTATAACCTCACCCCTCCTTCA  143
      |||||||| ||||||||||||||||| |||||||||||| |||||| |||
seq2  CAGTAAAT-CTGTTTCTTGGCTGACCATTTATAACCTCA-CCCTCC-TCA  146

seq1  AAGAAAT-ACTCTTGA-GTACATGAGCCTTGCTGAAAAAAATTCAGTACC  191
      ||||||| |||||||| ||||||||| |||||||||||||||||||||||
seq2  AAGAAATAACTCTTGAGGTACATGAG-CTTGCTGAAAAAAATTCAGTACC  195

seq1  GTGTATACATGACTAATATTTGCACATAGATGTTCAACTACATAAGAACC  241
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  GTGTATACATGACTAATATTTGCACATAGATG-TCAACTACATAAGAA-C  243

seq1  TGCTATTGTTTTTTTCTAGTTATTTTAGAGATGCAAAAGTGAGTTTGAGA  291
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTG-TTTTTTCTAGTTATTTTAGAGATGCAAAAGTGAGTTTGAGA  292

seq1  TAGTATGGACTCCAGATTACATATTTTTATTTTCTAATGAAAACTTAGTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGGACTCCAGATTACATATTTTTATTTTCTAATGAAAACTTAGTT  342

seq1  TCTTTCTATTTGTAGTAATAAGCTTACATAGCAGTGTTAACCAAAGCCTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTATTTGTAGTAATAAGCTTACATAGCAGTGTTAACCAAAGCCTG  392

seq1  TAATCTCAGGGCTTATGAGAGTAGACAGGAGAAAGGGTCCAAAAAAACAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGGGCTTATGAGAGTAGACAGGAGAAAGGGTCCAAAAAAACAG  442

seq1  TGTGGGTGGTTAGTGATATCCTTTTACAAACTTAAACAAATAAATTCAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGTTAGTGATATCCTTTTACAAACTTAAACAAATAAATTCAAA  492

seq1  CATACACATTTTCCTTTGAGATGATTTTTTTTTGATTGCAATTCTTTCTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATTTTCCTTTGAGATGATTTTTTTTTGATTGCAATTCTTTCTA  542

seq1  ATATGTCTGTCTTTTAGATACTTTCAAGCATGCCACGTCTTTGGTTTCTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTGTCTTTTAGATACTTTCAAGCATGCCACGTCTTTGGTTTCTG  592

seq1  CAATAATATGTTTAAGTATTATTATGGGTAAATGCTACATGTCTTTCACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATGTTTAAGTATTATTATGGGTAAATGCTACATGTCTTTCACA  642

seq1  TTTACACATCTGCTGTATGTTTTCAATGTTGGAAAACTGTCAGCATCTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACATCTGCTGTATGTTTTCAATGTTGGAAAACTGTCAGCATCTCT  692

seq1  AAAAGCAATTTATTTACCCCTTTTTTTCAAACTTAAAACCTTAATTAAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATTTATTTACCCCTTTTTTTCAAACTTAAAACCTTAATTAAGA  742

seq1  ATATGTAAGTCCATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTCCATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  792

seq1  AACTTCACATAAAACCAGAGATACTGAAACATATAGAGGAGAAAGTGGGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACATAAAACCAGAGATACTGAAACATATAGAGGAGAAAGTGGGG  842

seq1  AAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGC  892

seq1  AATGGCTTGTGCTATAAGATCGAGAATTGACAAATGGGACATCATGAAAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTGTGCTATAAGATCGAGAATTGACAAATGGGACATCATGAAAC  942

seq1  TCCAAGGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCA  992

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  1042

seq1  AATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCGA  1092

seq1  ATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1136


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