BAC Information

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BAC

Clone NameB6Ng01-214N17
Chromosome12 (Build37)
Map Location 6,347,579 - 6,518,280
singlet/doubletdoublet
Overlap geneLOC100042118
Upstream geneKlhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
Downstream geneLOC668380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214N17.bB6Ng01-214N17.g
ACCGA031991GA031992
length1,1011,125
definitionB6Ng01-214N17.b B6Ng01-214N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,347,579 - 6,348,679)(6,517,145 - 6,518,280)
sequence
gaattcagcccaaagaccccttttatggtagaagtctattaggtgattta
ttcaagtttaaactagtaaatcaactttgccacactgaatgtctcccatt
ttcattccaaaataacagctgggaagttggggctgatcatcttttaagga
tatgtgaactatggagtgaatatgttggtaccctatcgtgtaagatgttg
gctgcacactgtacattccaaagtattttcacaggcaccgggtgcttgat
aatggtagccagagatggtagcaaactgaacaatatctttgcagaagctt
caatattttctctcttatttttcattagttttgacaaatcttgcatggta
aagcttaagaaacttggatttttaataaatccaattgtcgtcgactgtgg
gagcgctgcttttggagagatgacatttgtgattcctttaccaaacaaca
tgaaatcctttaaacttcaaatccaaactatgacctttgagcaatggtct
atttccttaataatgtgtttaaatgtcagtaaaatcattctgacggcaaa
tctttggaaaactctatcaaaataatcaaatagtcaagtaatcctaacaa
gggcaagaaaaggggaaatgaaaaaaagacaggcaggagaagtcaaggga
agagaagacagggaagacagacaggagaaatcaagggaagaaaagacagg
gaagacagacaggagaaatcaagggaagaaaagacagggaagtcagcact
ctatgcagtggagacatagatggtgttaaactttaagaattccatagact
tgtatatttaagtttgtgcaaaatgctgccatagcttcataaatatggac
cataaatactagaacagagaccattgaaatagccatatgtctaaaatatt
attgtatttaaaagccatacatttattagccatggaagtcacaaactttc
tcatgtgaaagatatctgaacggctagttcttcaaaggcatggggcaagg
gctgtttgattgatggtaccaggttagaacagaactttaatgtcctgggt
taaattgttacttttatttttgagtcatctaacttctttcaggatttgcc
t

gaattcttctcacatgaatgaaaagactacataaatactgtacccttact
aaactttgggtgttttaagaatgactcactttaataaaataggtacaagc
agatgcatggagatatgcaaggatgtattaacacttatggatatgatatg
ttactacagatagctttggctttaagaatagatctcagaatacttggtaa
tatagagagctttagcatgacatttgcaatcacaagatctgaaaccaaac
taggatcacaagaagcaagagtatgaaaagatgaacttgaatatgtgtgt
atccctttgcctgtgtttcacaaacatagcctatgcatgtgccaagttct
cagaaatgagtatatccctccagcaagtaggaatcgaaagcataactata
aactctatcatcaaggtgcctacagtataaacccagaagaaaataagaga
ataatgacataataaaatggtaaataaatacacaaaatgcagaggttcac
taaatgctaagattcaagttatagtgtggaatttgatgagcggatggtgg
tagcagatgctttctgtctggtccattgagaggctctataacgaatcatc
atgatgcaataaaaaagagttttacttagaaaatgctgtgggtgcactga
aacaccagtgaatatgttttctcaccaatgtgaaaatgctgaagtgacag
aataatattttatatggaacttaaagtatatgtagaagcttgctgtgaga
tattataagacatttcaaaaagaaaaaaagaaaaagaaaaaatggactgg
tgtaaaaatgatggaactcagagacagatactagaacaaccatttaggaa
aaaccaatgcttttcagagatagctttttactccgctgcagggcacaccc
attgttctcagtatttctctaagtacacagtagggcctgcttgacagaca
gccatcactaagaatatataaacctcatgattatatgaaagtccacagag
tcaaacactcatcccatttcttattttggagcaggagctagttgaattaa
ggtttattttatttatttcgtttggacacatcagagtcaacttgggaaga
agaaccctactctccctaaatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_6347579_6348679
seq2: B6Ng01-214N17.b_52_1152

seq1  GAATTCAGCCCAAAGACCCCTTTTATGGTAGAAGTCTATTAGGTGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCAAAGACCCCTTTTATGGTAGAAGTCTATTAGGTGATTTA  50

seq1  TTCAAGTTTAAACTAGTAAATCAACTTTGCCACACTGAATGTCTCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTAAACTAGTAAATCAACTTTGCCACACTGAATGTCTCCCATT  100

seq1  TTCATTCCAAAATAACAGCTGGGAAGTTGGGGCTGATCATCTTTTAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCAAAATAACAGCTGGGAAGTTGGGGCTGATCATCTTTTAAGGA  150

seq1  TATGTGAACTATGGAGTGAATATGTTGGTACCCTATCGTGTAAGATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAACTATGGAGTGAATATGTTGGTACCCTATCGTGTAAGATGTTG  200

seq1  GCTGCACACTGTACATTCCAAAGTATTTTCACAGGCACCGGGTGCTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACACTGTACATTCCAAAGTATTTTCACAGGCACCGGGTGCTTGAT  250

seq1  AATGGTAGCCAGAGATGGTAGCAAACTGAACAATATCTTTGCAGAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGCCAGAGATGGTAGCAAACTGAACAATATCTTTGCAGAAGCTT  300

seq1  CAATATTTTCTCTCTTATTTTTCATTAGTTTTGACAAATCTTGCATGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTCTCTCTTATTTTTCATTAGTTTTGACAAATCTTGCATGGTA  350

seq1  AAGCTTAAGAAACTTGGATTTTTAATAAATCCAATTGTCGTCGACTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAAGAAACTTGGATTTTTAATAAATCCAATTGTCGTCGACTGTGG  400

seq1  GAGCGCTGCTTTTGGAGAGATGACATTTGTGATTCCTTTACCAAACAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTGCTTTTGGAGAGATGACATTTGTGATTCCTTTACCAAACAACA  450

seq1  TGAAATCCTTTAAACTTCAAATCCAAACTATGACCTTTGAGCAATGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCCTTTAAACTTCAAATCCAAACTATGACCTTTGAGCAATGGTCT  500

seq1  ATTTCCTTAATAATGTGTTTAAATGTCAGTAAAATCATTCTGACGGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTAATAATGTGTTTAAATGTCAGTAAAATCATTCTGACGGCAAA  550

seq1  TCTTTGGAAAACTCTATCAAAATAATCAAATAGTCAAGTAATCCTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAAAACTCTATCAAAATAATCAAATAGTCAAGTAATCCTAACAA  600

seq1  GGGCAAGAAAAGGGGAAATGAAAAAAAGACAGGCAGGAGAAGTCAAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGAAAAGGGGAAATGAAAAAAAGACAGGCAGGAGAAGTCAAGGGA  650

seq1  AGAGAAGACAGGGAAGACAGACAGGAGAAATCAAGGGAAGAAAAGACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGACAGGGAAGACAGACAGGAGAAATCAAGGGAAGAAAAGACAGG  700

seq1  GAAGACAGACAGGAGAAATCAAGGGAAGAAAAGACAGGGAAGTCAGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGACAGGAGAAATCAAGGGAAGAAAAGACAGGGAAGTCAGCACT  750

seq1  CTATGCAGTGGAGACATAGATGGTGTT-AACTTTAAGAATTCCATAGACT  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTATGCAGTGGAGACATAGATGGTGTTAAACTTTAAGAATTCCATAGACT  800

seq1  TGTATATTTAAGTTTGTGCAAAATGCTGCCATAGCTTCATAAATATGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTAAGTTTGTGCAAAATGCTGCCATAGCTTCATAAATATGGAC  850

seq1  CATAAATACTAGAACAGAGACCATTGAAATAGCCATATGTCTAAAATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATACTAGAACAGAGACCATTGAAATAGCCATATGTCTAAAATATT  900

seq1  ATTGTATTTAAAAGCCATACATTTATTAGCCATGG-AGTCACAAACTTTC  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTGTATTTAAAAGCCATACATTTATTAGCCATGGAAGTCACAAACTTTC  950

seq1  TCATGTGAAAGATTATCTGAACGGCCTAGTTC-TCAAAGGCATGGGGCAA  997
      |||||||||||| ||||||||||| ||||||| |||||||||||||||||
seq2  TCATGTGAAAGA-TATCTGAACGG-CTAGTTCTTCAAAGGCATGGGGCAA  998

seq1  GGGCTGTTTGATTGATGGGTACCAGGTTAAGAACAG-ACTTTAATGTCCT  1046
      |||||||||||||||| ||||||||||| ||||||| |||||||||||||
seq2  GGGCTGTTTGATTGAT-GGTACCAGGTT-AGAACAGAACTTTAATGTCCT  1046

seq1  GGTTAAAATTTGTTAC-TTTATTTTTGAGTCATTCTACTTCTTTCCAGAT  1095
      || | ||| ||||||| ||||||||||||||||   |||||||||  |||
seq2  GGGTTAAA-TTGTTACTTTTATTTTTGAGTCATCTAACTTCTTTCAGGAT  1095

seq1  TTGCCT  1101
      ||||||
seq2  TTGCCT  1101


seq1: chr12_6517145_6518280
seq2: B6Ng01-214N17.g_64_1188 (reverse)

seq1  ATGTATTTA-GGAGAGTTAGGGTGTCTCTTCTCAAG-TGACTCTGAATTG  48
      ||||||||| |||||| ||||||   ||||| |||| |||||||||  ||
seq2  ATGTATTTAGGGAGAG-TAGGGTTCTTCTTCCCAAGTTGACTCTGA--TG  47

seq1  TGTCAAACAGAAAATAAAATAAAATAAACCCTAAATGTCAAACTTAGCCT  98
      |||| ||  ||||   |||||||||||||| |||   ||||   ||||  
seq2  TGTCCAAACGAAA--TAAATAAAATAAACCTTAA--TTCAA--CTAGC--  89

seq1  TCCTGCTCAAAATAAAGAAATGGGATGAGTGTTTTGACTCTTGTGG-CTT  147
      |||||||| |||  ||||||||||||||||| |||||||| ||||| |||
seq2  TCCTGCTCCAAAATAAGAAATGGGATGAGTG-TTTGACTC-TGTGGACTT  137

seq1  TCATTATATCATG-GGTTTATATAATTCTTAGTGATGGCTGTCTTGTCAA  196
      ||||   |||||| ||||||||| ||||||||||||||||||| ||||||
seq2  TCATATAATCATGAGGTTTATAT-ATTCTTAGTGATGGCTGTC-TGTCAA  185

seq1  GCAGGCCCTACTGTGTACTTAGAGAAATACTGAGAACAATGGGTGTGCCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCCTACTGTGTACTTAGAGAAATACTGAGAACAATGGGTGTGCCC  235

seq1  TGCAGCGGAGTAAAAAGCTATCTCTGAAAAGCATTGGTTTTTCCTAAATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCGGAGTAAAAAGCTATCTCTGAAAAGCATTGGTTTTTCCTAAATG  285

seq1  GTTGTTCTAGTATCTGTCTCTGAGTTCCATCATTTTTACACCAGTCCATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTAGTATCTGTCTCTGAGTTCCATCATTTTTACACCAGTCCATT  335

seq1  TTTTCTTTTTCTTTTTTTCTTTTTGAAATGTCTTATAATATCTCACAGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTCTTTTTTTCTTTTTGAAATGTCTTATAATATCTCACAGCA  385

seq1  AGCTTCTACATATACTTTAAGTTCCATATAAAATATTATTCTGTCACTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTACATATACTTTAAGTTCCATATAAAATATTATTCTGTCACTTC  435

seq1  AGCATTTTCACATTGGTGAGAAAACATATTCACTGGTGTTTCAGTGCACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCACATTGGTGAGAAAACATATTCACTGGTGTTTCAGTGCACC  485

seq1  CACAGCATTTTCTAAGTAAAACTCTTTTTTATTGCATCATGATGATTCGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTTTCTAAGTAAAACTCTTTTTTATTGCATCATGATGATTCGT  535

seq1  TATAGAGCCTCTCAATGGACCAGACAGAAAGCATCTGCTACCACCATCCG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCCTCTCAATGGACCAGACAGAAAGCATCTGCTACCACCATCCG  585

seq1  CTCATCAAATTCCACACTATAACTTGAATCTTAGCATTTAGTGAACCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAATTCCACACTATAACTTGAATCTTAGCATTTAGTGAACCTCT  635

seq1  GCATTTTGTGTATTTATTTACCATTTTATTATGTCATTATTCTCTTATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGTGTATTTATTTACCATTTTATTATGTCATTATTCTCTTATTT  685

seq1  TCTTCTGGGTTTATACTGTAGGCACCTTGATGATAGAGTTTATAGTTATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGGTTTATACTGTAGGCACCTTGATGATAGAGTTTATAGTTATG  735

seq1  CTTTCGATTCCTACTTGCTGGAGGGATATACTCATTTCTGAGAACTTGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGATTCCTACTTGCTGGAGGGATATACTCATTTCTGAGAACTTGGC  785

seq1  ACATGCATAGGCTATGTTTGTGAAACACAGGCAAAGGGATACACACATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATAGGCTATGTTTGTGAAACACAGGCAAAGGGATACACACATAT  835

seq1  TCAAGTTCATCTTTTCATACTCTTGCTTCTTGTGATCCTAGTTTGGTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCATCTTTTCATACTCTTGCTTCTTGTGATCCTAGTTTGGTTTC  885

seq1  AGATCTTGTGATTGCAAATGTCATGCTAAAGCTCTCTATATTACCAAGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGTGATTGCAAATGTCATGCTAAAGCTCTCTATATTACCAAGTA  935

seq1  TTCTGAGATCTATTCTTAAAGCCAAAGCTATCTGTAGTAACATATCATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGATCTATTCTTAAAGCCAAAGCTATCTGTAGTAACATATCATAT  985

seq1  CCATAAGTGTTAATACATCCTTGCATATCTCCATGCATCTGCTTGTACCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTGTTAATACATCCTTGCATATCTCCATGCATCTGCTTGTACCT  1035

seq1  ATTTTATTAAAGTGAGTCATTCTTAAAACACCCAAAGTTTAGTAAGGGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTAAAGTGAGTCATTCTTAAAACACCCAAAGTTTAGTAAGGGTA  1085

seq1  CAGTATTTATGTAGTCTTTTCATTCATGTGAGAAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTATGTAGTCTTTTCATTCATGTGAGAAGAATTC  1125


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