BAC Information

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BAC

Clone NameB6Ng01-214O03
Chromosome12 (Build37)
Map Location 45,204,460 - 45,205,612
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
Downstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214O03.bB6Ng01-214O03.g
ACCGA032011GA032012
length1,2191,138
definitionB6Ng01-214O03.b B6Ng01-214O03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttcagtggaagtctctgaagtttatgctttcttctttcaaatg
cattttcatttcaggagatggagcctttgatgggtggagtcttttctcag
gacaactttcttttgtctcagtacaagattctaggtttctttattctttt
ttgttgtttcgagacagggtttctgtctggcctggctgtcctggaactca
ctttatagaccaggctggcctcaaacacagaaatccgcctgcctctgcct
cccaggtggtggtattaaaggcgtgtgccaccactgcctggctctaggct
tcttttcaatggtgctaaaccctgtaacaattactttcaagccaacttca
ttagtaatttttaaacttgttcatactcttcaaccaaaaaagggcatttc
aaattgtttctgctcccatttttgctctttcagtgtatacctggatgcaa
gtaggcaagtggaggtgacacacacagtagatagcagccatgccacaggt
taggcactatatggaaatttcctctgtcaaacagatccatccattacttt
caaatttaaccttactcaaatgatcagaccgtgtgcacaatacaattaag
ctctttgtctgaatatcaataacaattcttggtcccattcctgatagttg
ttgtcctctttaaagtttcatgagctgggcctccaactgtccttggcatt
cttaccttccactctcctactgaaatggctcattattctcagtttgcaca
atccaaagacttttcttgccaaagtaacaactcttccaaagtccagccag
gaagcatttctaaaggcctaagaaccacactgaaaggtctgtgcaaaggc
caaagcaatgccctcattttgtgtaccacttttctgacttagttaacttt
tttgtgtgtggcgctgtgtaaaatactctcattaaacgcaatttctagga
gaaattattttatttggggttcatagcttgatgttcattcttaagggttt
gtgcttagtatctatcaacttgacagaatctggataactaggacttagct
ttgggagaccctgtgcagaacagtctgattactgattatggaagaaccac
cactgtggcgaacaccactccttaaaggaattggaagatagggattcttg
tgcaattaaggatgagcgagccatggatcgctacatgctcctgttgttag
ctgctgatgtgatgaccat

gaattcaaggcacatgggtataatctgataaccaaataaacagaaggtga
gagactggaggcaaggaaaattcacctcctcttggctttgcctactagac
aagacaggctactacttgctacaagaaggagcaggaaagaaaaaaaaata
gtagccttataggaagagaaatgtaatagatcagaagttcaattttgaac
atggtgaagctgaattgcctgtgagaagcccgtgttcatatatctaaaat
aacctaggaaatgtgcccagagctcagaaactctgtgaagtgggaaggta
aagccctcagtatagatgagcttctacaaaggatgcctgtggtagaagag
attaataataccacaccctcccttagtatctacaaggagtgtccgggacc
tccagagactctaaaatctgaaaatgtccaagtcccgtatgcaacatggc
acaggatgttgccaggtggcccatacacatgctcccacataggttaagtt
atcattggataacttatagcttcttatacaatgtaaaagctgtgtgaatc
acggctgtactgtctaagaaacccagacaggaaggaaagtaaaaatgtac
atgttcagaacagaccattaaaaaacaaaaacaacaactttcatctgtaa
tctgctgaattagagtggggtctgtggatacataaggccagctgtattag
taattgttaatacctgaaagagtttcctgtgcaggccctgtttccagccc
tttacatacataaactcttctcttcttcacatgtatccaatgcagaatca
ctctccttgtttatcagtttgtgagactaagagcactgttcctgaggtca
cgaacagccactcagtaaaacctctccctgagtacagactgcatgaggga
ggatggccctgaagcatagagatggcaataacagacaactgaatcaacac
tgctgagaatattgagaatgggaataccaagggaagaaacagctttacaa
atgagaggttgtcaggaatgtaaacagacaagcaccattaaataatatca
ctcaaagcccgtggagacgaaaccaacaaagcacaaccaacagcaacaag
aaagccaaataaacttttagtgagcagtaaatactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45204460_45205612
seq2: B6Ng01-214O03.g_67_1204

seq1  GAATTCAAGGCACATGGGTATAATCTGATAACCAAATAAACAGAAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCACATGGGTATAATCTGATAACCAAATAAACAGAAGGTGA  50

seq1  GAGACTGGAGGCAAGGAAAATTCACCTCCTCTTGGCTTTGCCTACTAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGAGGCAAGGAAAATTCACCTCCTCTTGGCTTTGCCTACTAGAC  100

seq1  AAGACAGGCTACTACTTGCTACAAGAAGGAGCAGGAAAGAAAAAAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCTACTACTTGCTACAAGAAGGAGCAGGAAAGAAAAAAAAATA  150

seq1  GTAGCCTTATAGGAAGAGAAATGTAATAGATCAGAAGTTCAATTTTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTTATAGGAAGAGAAATGTAATAGATCAGAAGTTCAATTTTGAAC  200

seq1  ATGGTGAAGCTGAATTGCCTGTGAGAAGCCCGTGTTCATATATCTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAAGCTGAATTGCCTGTGAGAAGCCCGTGTTCATATATCTAAAAT  250

seq1  AACCTAGGAAATGTGCCCAGAGCTCAGAAACTCTGTGAAGTGGGAAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGGAAATGTGCCCAGAGCTCAGAAACTCTGTGAAGTGGGAAGGTA  300

seq1  AAGCCCTCAGTATAGATGAGCTTCTACAAAGGATGCCTGTGGTAGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTCAGTATAGATGAGCTTCTACAAAGGATGCCTGTGGTAGAAGAG  350

seq1  ATTAATAATACCACACCCTCCCTTAGTATCTACAAGGAGTGTCCGGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATACCACACCCTCCCTTAGTATCTACAAGGAGTGTCCGGGACC  400

seq1  TCCAGAGACTCTAAAATCTGAAAATGTCCAAGTCCCGTATGCAACATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGACTCTAAAATCTGAAAATGTCCAAGTCCCGTATGCAACATGGC  450

seq1  ACAGGATGTTGCCAGGTGGCCCATACACATGCTCCCACATAGGTTAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGTTGCCAGGTGGCCCATACACATGCTCCCACATAGGTTAAGTT  500

seq1  ATCATTGGATAACTTATAGCTTCTTATACAATGTAAAAGCTGTGTGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGGATAACTTATAGCTTCTTATACAATGTAAAAGCTGTGTGAATC  550

seq1  ACGGCTGTACTGTCTAAGAAACCCAGACAGGAAGGAAAGTAAAAATGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTGTACTGTCTAAGAAACCCAGACAGGAAGGAAAGTAAAAATGTAC  600

seq1  ATGTTCAGAACAGACCATTAAAAAACAAAAACAACAACTTTCATCTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGAACAGACCATTAAAAAACAAAAACAACAACTTTCATCTGTAA  650

seq1  TCTGCTGAATTAGAGTGGGGTCTGTGGATACATAAGGCCAGCTGTATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAATTAGAGTGGGGTCTGTGGATACATAAGGCCAGCTGTATTAG  700

seq1  TAATTGTTAATACCTGAAAGAGTTTCCTGTGCAGGCCCTGTTTCCAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTAATACCTGAAAGAGTTTCCTGTGCAGGCCCTGTTTCCAGCCC  750

seq1  TTTACATACATAAACTCTTCTCTTCTTCACATGTATCCAATGCAGAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATACATAAACTCTTCTCTTCTTCACATGTATCCAATGCAGAATCA  800

seq1  CTCTCCTTGTTTATCAGTTTGTGAGACTAAGAGCACTGTTCCTGAGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTGTTTATCAGTTTGTGAGACTAAGAGCACTGTTCCTGAGGTCA  850

seq1  CGAACAGCCACTCAGTAAAACCTCTCCCTGAGTACAGACTGCATGAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAGCCACTCAGTAAAACCTCTCCCTGAGTACAGACTGCATGAGGGA  900

seq1  GGATGGCCCTGAAGCATAGAGATGGCAATAACAGACAACTGAATCAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCCTGAAGCATAGAGATGGCAATAACAGACAACTGAATCAACAC  950

seq1  TGCTGAAGAATATTGAGAATGGGAATACCAAGGGAAGAAACAGCTTTACA  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTG-AGAATATTGAGAATGGGAATACCAAGGGAAGAAACAGCTTTACA  999

seq1  AATGAGAGGTTGTCAGGAATGTAAAACAGACAAGCAACCATTAAATAATA  1050
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  AATGAGAGGTTGTCAGGAATGT-AAACAGACAAGC-ACCATTAAATAATA  1047

seq1  TCACTCAAAGCCCGTGGAGACAGAAAACAAACAAAAGCAAACAAACAACA  1100
      ||||||||||||||||||||| |||| |||   |||||  |||| |||||
seq2  TCACTCAAAGCCCGTGGAGAC-GAAACCAA--CAAAGC--ACAACCAACA  1092

seq1  GCAACAAAAGAAAGCCAAATAAAACTTGTTAGTGAGCCAGTAAAAATACT  1150
      |||||  ||||||||||||| |||||| |||||||| ||||  |||||||
seq2  GCAAC--AAGAAAGCCAAAT-AAACTT-TTAGTGAG-CAGT--AAATACT  1135

seq1  GAA  1153
      |||
seq2  GAA  1138


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