BAC Information

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BAC

Clone NameB6Ng01-215B10
Chromosome12 (Build37)
Map Location 16,605,109 - 16,767,454
singlet/doubletdoublet
Overlap geneNtsr2, Greb1
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273, Lpin1
Downstream geneE2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215B10.bB6Ng01-215B10.g
ACCGA032158GA032159
length1,133976
definitionB6Ng01-215B10.b B6Ng01-215B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,605,109 - 16,606,222)(16,766,485 - 16,767,454)
sequence
gaattctcccacccaggatggctgctttgtttaccaatgaacaccatttc
attcactaagatcataagacaaccaactatacatggtaatttttggaaat
caaattgcaatctctgaaaaggttatagtcacagtgactggggatgagac
ctgcttccgaaagagcttgcttcatgtgtcttggtaaagggctcagatcc
tttccaccgggaccttccccatagggttgcttgagttgacatagctttgg
cttccccaagagtggtgggtctaagagagggcaaggtttccaccttgcca
gaatactttttatggcctagtttcttgttaaagtcacacctgccaccaca
ttctgttcctgagaaccacgtgaataagcaaatccagccacacttggggg
aagtaggatcggactcctcacgttgaaagaatcaccagcaacccagatta
tcccaggcctgggtcatctctggagacggttacaaccagaagaagcacct
ttggcagcttccattaatcgtgtgcagactgagcctcagacagagcaaag
gaggccctctaccaacctctctcaggctgcatcctctctgcatgttgccc
tgccaatcctaacaccctcaactccaaactctccttttcttgggaagccc
tcgagcactatttagggcacatcttccaaactgagcttgcacacttaatt
tttttaaaggttgtatgtatgtgtgttttgtggcacatgtgtgtgagttc
ccaaggaggccagaggagatcattatccattggagcttggattctgaacc
acccaacatggggtgctgggaatcaaactctaacctcttggcacagcagc
aagatacctgctgaagtctgtttgcttccctgctccctccatcatgggct
ccactaactgcttgtttcaacatctgccccttctctggctgttcaaggca
gtgggtctaattttttcctctgttggtcaatcagttgccataaagtgacc
atcccctggtagcttgtagttgaccttctggaatggaatgcattaaaagg
ggagaattcgccaatgggatcctttcttttcctccctgatttaccttcat
gaaccacggcccatttccacccagaagacacct
gaattcttatctctccttaagctgttgttggaagatccaccgcaaactgt
atcagtggggggaaaaaaacctcaaaacaacacaacaacaaaactgtagc
agctgggtcatcctgacctagaactgcctggaatgtttctaattgtggca
gctggcagtgcagagtcacctaggcagccagagcctcttcagtgtaagtt
cgtaatcagactcattgtttcacagctagggatacatgcccgagcctgtc
tggctctgtaggaggagggagatgtgcatcttccaagcagtgagctgggt
ccatccttaccggcattagtgggtaccaaggctgtcatgttactgatgct
ggagagctggtgggacaggggtgtggcttatgtgtttctgtgtggattgc
ctttgcagggcgtctaggacatgacacggttcatcaaagatttggtagga
tgtcactatcttttaaaactcttcagctcaacggtcttctaggcgtattt
tagacctcattttgctgagaaaatgaaggctctggggagtggccactcat
ccccattatatatcagatacccctaaatgtttgcctgagggagagtgagt
gagcaacgacactagtggaaggaaaagaccttgagagagactggctgata
tggacccagagtgagtccccacagttcaaaggtttcttcgcctcccaaag
acccagtttttaagttctaggttcaaaagacaggaggtgggggttgaacg
taagcaaacagcacaagacagatgaggaagtatgtttatgactgacagag
ggatttataatcttcattttaaataatgccagggactggagagatggctc
agtggttcaaagcaatgggcttctcttgcagaacatgcaagtttgattcc
catcaccccacgtggatggctcacagccatcttgtacctccagtagctag
gggatcaatccttctcttcctggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_16605109_16606222
seq2: B6Ng01-215B10.b_44_1176

seq1  GAATTCTCCCACCCAGGATGGCTGCTTTGTTTACCAATGAACACCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCACCCAGGATGGCTGCTTTGTTTACCAATGAACACCATTTC  50

seq1  ATTCACTAAGATCATAAGACAACCAACTATACATGGTAATTTTTGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAAGATCATAAGACAACCAACTATACATGGTAATTTTTGGAAAT  100

seq1  CAAATTGCAATCTCTGAAAAGGTTATAGTCACAGTGACTGGGGATGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCAATCTCTGAAAAGGTTATAGTCACAGTGACTGGGGATGAGAC  150

seq1  CTGCTTCCGAAAGAGCTTGCTTCATGTGTCTTGGTAAAGGGCTCAGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCGAAAGAGCTTGCTTCATGTGTCTTGGTAAAGGGCTCAGATCC  200

seq1  TTTCCACCGGGACCTTCCCCATAGGGTTGCTTGAGTTGACATAGCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCGGGACCTTCCCCATAGGGTTGCTTGAGTTGACATAGCTTTGG  250

seq1  CTTCCCCAAGAGTGGTGGGTCTAAGAGAGGGCAAGGTTTCCACCTTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAAGAGTGGTGGGTCTAAGAGAGGGCAAGGTTTCCACCTTGCCA  300

seq1  GAATACTTTTTATGGCCTAGTTTCTTGTTAAAGTCACACCTGCCACCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTTTTATGGCCTAGTTTCTTGTTAAAGTCACACCTGCCACCACA  350

seq1  TTCTGTTCCTGAGAACCACGTGAATAAGCAAATCCAGCCACACTTGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCCTGAGAACCACGTGAATAAGCAAATCCAGCCACACTTGGGGG  400

seq1  AAGTAGGATCGGACTCCTCACGTTGAAAGAATCACCAGCAACCCAGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGATCGGACTCCTCACGTTGAAAGAATCACCAGCAACCCAGATTA  450

seq1  TCCCAGGCCTGGGTCATCTCTGGAGACGGTTACAACCAGAAGAAGCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCCTGGGTCATCTCTGGAGACGGTTACAACCAGAAGAAGCACCT  500

seq1  TTGGCAGCTTCCATTAATCGTGTGCAGACTGAGCCTCAGACAGAGCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCTTCCATTAATCGTGTGCAGACTGAGCCTCAGACAGAGCAAAG  550

seq1  GAGGCCCTCTACCAACCTCTCTCAGGCTGCATCCTCTCTGCATGTTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTCTACCAACCTCTCTCAGGCTGCATCCTCTCTGCATGTTGCCC  600

seq1  TGCCAATCCTAACACCCTCAACTCCAAACTCTCCTTTTCTTGGGAAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATCCTAACACCCTCAACTCCAAACTCTCCTTTTCTTGGGAAGCCC  650

seq1  TCGAGCACTATTTAGGGCACATCTTCCAAACTGAGCTTGCACACTTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCACTATTTAGGGCACATCTTCCAAACTGAGCTTGCACACTTAATT  700

seq1  TTTTTAAAGGTTGTATGTATGTGTGTTTTGTGGCACATGTGTGTGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGTTGTATGTATGTGTGTTTTGTGGCACATGTGTGTGAGTTC  750

seq1  CCAAGGAGGCCAGAGGAGATCATTATCCATTGGAGCTTGGATTCTGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGGCCAGAGGAGATCATTATCCATTGGAGCTTGGATTCTGAACC  800

seq1  ACCCAACAT-GGGTGCTGGGAATCAAACTCTAACCTC-TGGCACAGCAGC  848
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  ACCCAACATGGGGTGCTGGGAATCAAACTCTAACCTCTTGGCACAGCAGC  850

seq1  AAGATACCTGCTGAAGTCTTGTTTGCTTCCCTGCTCCCT-CATCATGGCC  897
      |||||||||||||||||| |||||||||||||||||||| |||||||| |
seq2  AAGATACCTGCTGAAGTC-TGTTTGCTTCCCTGCTCCCTCCATCATGGGC  899

seq1  TCCACTAACTGC-TGTTTCAAACATCTGCCCCTTCTCTGGCTGTTCAAGG  946
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TCCACTAACTGCTTGTTTC-AACATCTGCCCCTTCTCTGGCTGTTCAAGG  948

seq1  CAGT-GGTCTAAGTTTTTCC-CTGTTGGTCCATCAG-TGCCAT-AAGTGG  992
      |||| ||||||| ||||||| ||||||||| ||||| |||||| ||||| 
seq2  CAGTGGGTCTAATTTTTTCCTCTGTTGGTCAATCAGTTGCCATAAAGTGA  998

seq1  CCAT-CCCTGGTAGC-TGTAG-TGACC-TCTGGAATG--AAGCAATAGA-  1035
      |||| |||||||||| ||||| ||||| |||||||||  | ||| || | 
seq2  CCATCCCCTGGTAGCTTGTAGTTGACCTTCTGGAATGGAATGCATTAAAA  1048

seq1  -GGGAGAGTCAGCCAAATGGAACC-TTCTTTT-CTCCCTGGTTCA-CTTC  1081
       |||||| |  |||||  ||| || ||||||| ||||||| || | ||||
seq2  GGGGAGAATTCGCCAATGGGATCCTTTCTTTTCCTCCCTGATTTACCTTC  1098

seq1  TAGACCAACGGCCCATTTC--ACCAGAAGACACCT  1114
        || | ||||||||||||   |||||||||||||
seq2  ATGAACCACGGCCCATTTCCACCCAGAAGACACCT  1133

seq1: chr12_16766485_16767454
seq2: B6Ng01-215B10.g_69_1044 (reverse)

seq1  TGGCCAGG-AGAG-AGGATTGAATCCCCTGGC-ACTGGAGCTAC-AGATG  46
      |||||||| |||| ||||||| ||||||| || ||||||| ||| |||||
seq2  TGGCCAGGAAGAGAAGGATTG-ATCCCCTAGCTACTGGAGGTACAAGATG  49

seq1  GCTGTGAGCCAT-CACGT-GGGTGATGGGAATCAAACTTGCATGTTCTGC  94
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  GCTGTGAGCCATCCACGTGGGGTGATGGGAATCAAACTTGCATGTTCTGC  99

seq1  AAGAGAAG-CCATTGCTTTGAACCACTGAGCCATCTCTCCAGTCCCTGGC  143
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCCCATTGCTTTGAACCACTGAGCCATCTCTCCAGTCCCTGGC  149

seq1  ATTATTTAAAATGAAGATTATAAATCCCTCTGTCAGTCATAAACATACTT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAAATGAAGATTATAAATCCCTCTGTCAGTCATAAACATACTT  199

seq1  CCTCATCTGTCTTGTGCTGTTTGCCTACGTTCAACCCCCACCTCCTGTCT  243
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTCATCTGTCTTGTGCTGTTTGCTTACGTTCAACCCCCACCTCCTGTCT  249

seq1  TTTGAACCTAGAACTTAAAAACTGGGTCTTTGGGAGGCGAAGAAACCTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCTAGAACTTAAAAACTGGGTCTTTGGGAGGCGAAGAAACCTTT  299

seq1  GAACTGTGGGGACTCACTCTGGGTCCATATCAGCCAGTCTCTCTCAAGGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGGGGACTCACTCTGGGTCCATATCAGCCAGTCTCTCTCAAGGT  349

seq1  CTTTTCCTTCCACTAGTGTCGTTGCTCACTCACTCTCCCTCAGGCAAACA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTCCACTAGTGTCGTTGCTCACTCACTCTCCCTCAGGCAAACA  399

seq1  TTTAGGGGTATCTGATATATAATGGGGATGAGTGGCCACTCCCCAGAGCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGTATCTGATATATAATGGGGATGAGTGGCCACTCCCCAGAGCC  449

seq1  TTCATTTTCTCAGCAAAATGAGGTCTAAAATACGCCTAGAAGACCGTTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTCAGCAAAATGAGGTCTAAAATACGCCTAGAAGACCGTTGA  499

seq1  GCTGAAGAGTTTTAAAAGATAGTGACATCCTACCAAATCTTTGATGAACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAGTTTTAAAAGATAGTGACATCCTACCAAATCTTTGATGAACC  549

seq1  GTGTCATGTCCTAGACGCCCTGCAAAGGCAATCCACACAGAAACACATAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGTCCTAGACGCCCTGCAAAGGCAATCCACACAGAAACACATAA  599

seq1  GCCACACCCCTGTCCCACCAGCTCTCCAGCATCAGTAACATGACAGCCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCCCTGTCCCACCAGCTCTCCAGCATCAGTAACATGACAGCCTT  649

seq1  GGTACCCACTAATGCCGGTAAGGATGGACCCAGCTCACTGCTTGGAAGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCACTAATGCCGGTAAGGATGGACCCAGCTCACTGCTTGGAAGAT  699

seq1  GCACATCTCCCTCCTCCTACAGAGCCAGACAGGCTCGGGCATGTATCCCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTCCCTCCTCCTACAGAGCCAGACAGGCTCGGGCATGTATCCCT  749

seq1  AGCTGTGAAACAATGAGTCTGATTACGAACTTACACTGAAGAGGCTCTGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAAACAATGAGTCTGATTACGAACTTACACTGAAGAGGCTCTGG  799

seq1  CTGCCTAGGTGACTCTGCACTGCCAGCTGCCACAATTAGAAACATTCCAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGGTGACTCTGCACTGCCAGCTGCCACAATTAGAAACATTCCAG  849

seq1  GCAGTTCTAGGTCAGGATGACCCAGCTGCTACAGTTTTGTTGTTGTGTTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTAGGTCAGGATGACCCAGCTGCTACAGTTTTGTTGTTGTGTTG  899

seq1  TTTTGAGGTTTTTTTCCCCCCACTGATACAGTTTGCGGTGGATCTTCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGTTTTTTTCCCCCCACTGATACAGTTTGCGGTGGATCTTCCAA  949

seq1  CAACAGCTTAAGGAGAGATAAGAATTC  970
      |||||||||||||||||||||||||||
seq2  CAACAGCTTAAGGAGAGATAAGAATTC  976