BAC Information

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BAC

Clone NameB6Ng01-215G16
Chromosome4 (Build37)12 (Build37)
Map Location 6,091,344 - 6,092,341112,940,971 - 112,941,190
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309
Downstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215G16.bB6Ng01-215G16.g
ACCGA032392GA032393
length991976
definitionB6Ng01-215G16.b B6Ng01-215G16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,091,344 - 6,092,341)(112,940,971 - 112,941,190)
sequence
gaattccagcccaaggtcttgctcaagcacgatctaggactgttggaaca
ctgaggctttagctatgtcagaattcaatcttaaaaggcacttataatag
gatggtactgaaagagagcacgtggatccatacactagactaacgcggga
atggagaattaagagaactccagactccaggaggagagcttccttgaaac
tctttttgcctcatgagcagcttttaggcatccctgcctgacaggctgac
tcgaccggagtgccgtggcacttttctttctctgtctctaagtgagtgac
tctctgtgtactctcatttgaggaggggcttttttggttcagttctagag
tttaaacctagcacccttcatatactaccattctagtaataaattaaatc
actgccctctaggactttttttaaaaggaagggtcttactatgtagcccc
acctggcttagaaattactgtacagtaatttatcaatatatgaaggaagg
aaaagaaaaaagagagagagagagagaaagaaagaaagaaagaaagaaag
aaagagagaaagaaagaaagaaagaaaggaagcaaggaaggaaggaagga
aggaaggaaggaagaaagaaaggaagaaagaaggaaagagatagatagat
ctcatactagcaactaaccttatacctgaagtctctaggggaaaaaaaaa
aaaaagaaaatgcacccaaagaaagagactgccaaaactaatcaaactga
aggctgaatcaataaatatagaagcacagagaacaataaaagtgatctat
gaaacacacggttggttctttgggaaaatccggaagatagacaaataatt
atccaaacttctgaaatgacaaaagagaatatctaaattaacaaaattag
aaatgaaaaggagaacgtaacaatagaccaagaaatccaagaatcgtctt
tgggtatacttcaggtcttacttcaaatcctgtcttcgcaa

gaattctgcactaaagccatgtggctttagacttgttttggttgagagac
ttttaatgacttctatttccttaggagttatggatttatttaaaatgttt
atttgatcttgatttaattttgataagtagtatctataaaaaaaaaatca
gtttctattgcatcttctaaattttgtggagtagaagttttacaagtatg
acctaatgattctttgaatttccttggagtctgttgttatatctcccttt
tgtttctgattttgttaatttgaatattccctctttgtttttagtttgga
taagggtttgtctagcttgttgattttctcaaagaagtaactctttgttt
cctcgattctttgtgttgttctgttcttattttactgattcagcccttag
tttaattattctttgccatctgcttctcttggttaagtttacttcttttt
gttctagagctttcaggtgtgttgagttcctttttttttttttttttaat
ttaggctcttattgctatgaactttcctcttagcattgcttttattgttg
ccataagcttgggtatgttgtgaattcatttttattgaattctagaaggt
ctttaatttcttttttatttctgtcttaacccagtagttatcagtagaaa
gttgtttgttttccatgtgtttgtaggctttctgtaatttctgttgtttt
cttgtttgtttgtttgtttgttttgttttgagacagggtttctctgtata
gccctggctgtcttgaaattcactctgtagaccaggctggccttgaactc
agaaatccacctgcctctgcctctgcctctggctctgcctctgcctctgc
ctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcct
ctggctctgcctctgcctctgcctctgctctgcctctgcctctgcctctg
cctcttgcctcttgtcttctgcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6091344_6092341
seq2: B6Ng01-215G16.b_43_1033

seq1  GAATTCCAAGCCCAAGGTCTTGCTCAAGCACGATCTAGGACTGTTGGAAC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCC-AGCCCAAGGTCTTGCTCAAGCACGATCTAGGACTGTTGGAAC  49

seq1  ACTGAGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATA  99

seq1  GGATGGTACTGAAAGAGAGCACGTGGATCCATACACTAGACTAACGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTACTGAAAGAGAGCACGTGGATCCATACACTAGACTAACGCGGG  149

seq1  AATGGAGAATTAAGAGAACTCCAGACTCCAGGAGGAGAGCTTCCTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAATTAAGAGAACTCCAGACTCCAGGAGGAGAGCTTCCTTGAAA  199

seq1  CTCTTTTTGCCTCATGAGCAGCTTTTAGGCATCCCTGCCTGACAGGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTGCCTCATGAGCAGCTTTTAGGCATCCCTGCCTGACAGGCTGA  249

seq1  CTCGACCGGAGTGCCGTGGCACTTTTCTTTCTCTGTCTCTAAGTGAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACCGGAGTGCCGTGGCACTTTTCTTTCTCTGTCTCTAAGTGAGTGA  299

seq1  CTCTCTGTGTACTCTCATTTGAGGAGGGGCTTTTTTGGTTCAGTTCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTACTCTCATTTGAGGAGGGGCTTTTTTGGTTCAGTTCTAGA  349

seq1  GTTTAAACCTAGCACCATTCATATACTAGCATTCTAGTAATAAATTAAAT  400
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  GTTTAAACCTAGCACCCTTCATATACTACCATTCTAGTAATAAATTAAAT  399

seq1  CACTGCCCTCTAGGACTTTTTTTAAAAGGAAGGGTCTTACTATGTAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCTCTAGGACTTTTTTTAAAAGGAAGGGTCTTACTATGTAGCCC  449

seq1  CACCTGGCTTAGAAATTACTGTACAGTAATTTATCAATATATGAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTTAGAAATTACTGTACAGTAATTTATCAATATATGAAGGAAG  499

seq1  GAAAAGAAAAAAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAAAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAA  549

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGCAAGGAAGGAAGGAAGG  600
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGAAAGAAAGAAAGAAAGAAAGGAAGCAAGGAAGGAAGGAAGG  599

seq1  AAGGAAGGAAGGAAGAAAGAAAGGAAGAAAGAAGGAAAGAGATAGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGAAAGAAAGGAAGAAAGAAGGAAAGAGATAGATAGA  649

seq1  TCTCATACTAGCAACTAACCTTATACCTGAAATCTCTAGGGGAAAAAAAA  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTCATACTAGCAACTAACCTTATACCTGAAGTCTCTAGGGGAAAAAAAA  699

seq1  AAAAAAGAAAATGCACCCAAAAGAAAGAGACTGCAAAAACTAATCAAACT  750
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  AAAAAAGAAAATGCACCC-AAAGAAAGAGACTGCCAAAACTAATCAAACT  748

seq1  GAAGGCTGAATCAATAAAGATAGAAGCAAAGAGAACAATAGAAGGAATCA  800
      |||||||||||||||||| ||||||||| ||||||||||| |||  ||| 
seq2  GAAGGCTGAATCAATAAATATAGAAGCACAGAGAACAATAAAAGTGATCT  798

seq1  ATGAAACAAACGGTTGGTTCTTTGGGAAAATCAGGAAGATAGACAAATAA  850
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  ATGAAACACACGGTTGGTTCTTTGGGAAAATCCGGAAGATAGACAAATAA  848

seq1  TTATCCAAACTTATTAAATGACAAAAAGAGAATATCTAAATTAACAAAAT  900
      |||||||||||| | ||||||| |||||||||||||||||||||||||||
seq2  TTATCCAAACTTCTGAAATGAC-AAAAGAGAATATCTAAATTAACAAAAT  897

seq1  TAGAAATGAAAAGGAGAACTTAACAATAGACCAAGAAAATCCAAAGAATC  950
      ||||||||||||||||||| ||||||||||||||| |||||| |||||||
seq2  TAGAAATGAAAAGGAGAACGTAACAATAGACCAAG-AAATCC-AAGAATC  945

seq1  ATACTTTGGTATACTTCAGGTCTTACTTCAGAATCCTGTACTTCACAA  998
       |  || ||||||||||||||||||||||| |||||||| |||| |||
seq2  GTCTTTGGGTATACTTCAGGTCTTACTTCA-AATCCTGT-CTTCGCAA  991


seq1: chr12_112940971_112941190
seq2: B6Ng01-215G16.g_837_1040

seq1  CTCTGTAGACCAGGCTGGCCTTGAACTCAAAGATCTGCCTGCCTCTGCCT  50
      ||||||||||||||||||||||||||||| | |||  |||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCT  50

seq1  CTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGC  100
      |||||||||   ||||||  ||||||  ||||||  ||||||  ||||||
seq2  CTGCCTCTG--GCTCTGC--CTCTGC--CTCTGC--CTCTGC--CTCTGC  90

seq1  CTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCT  150
        ||||||  ||||||  ||||||  ||||||  ||||||  ||||||||
seq2  --CTCTGC--CTCTGC--CTCTGC--CTCTGC--CTCTGC--CTCTGCCT  128

seq1  ----CTCTGCCTCTCTCTCTGCCT---CTCTGCCTCTCTGCCTCTCTCTC  193
          ||||||||||  ||||||||   ||||||  ||||||||||  |||
seq2  CTGGCTCTGCCTCTGCCTCTGCCTCTGCTCTGC--CTCTGCCTCTGCCTC  176

seq1  TGCCTCTCTGCCTC-TCTC-TCTGCCTCT  220
      ||||||| |||||| | || |||||||||
seq2  TGCCTCT-TGCCTCTTGTCTTCTGCCTCT  204


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