BAC Information

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BAC

Clone NameB6Ng01-215H12
Chromosome12 (Build37)
Map Location 89,532,183 - 89,743,294
singlet/doubletdoublet
Overlap geneLOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Upstream geneTmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093
Downstream geneLOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215H12.bB6Ng01-215H12.g
ACCGA032429GA032430
length6771,175
definitionB6Ng01-215H12.b B6Ng01-215H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,532,183 - 89,532,857)(89,742,127 - 89,743,294)
sequence
gaattctttcttctgaatggttgagtgagtgttgttgggtttttgtttgt
ttgtttgtttgtttgattggttgttttgagacagggtgtgccctacttag
gattttactgctgtaaagagacaccatgaccaaggtaacttttactagca
cagtatttaattgggtcagccttacaggttcagaggttcagtcctttatc
attgaggtagaagcatggtagcatctaatcccccatggcaagggaggagc
tgagagttctatatcttgatctaaaggctgctaggagatgactgacttcc
aggtggctaggaggaaggtctccaagacacccccctcccccacacagtga
cacagttcttccaacaaggcaacaccttctaatagtgccactacctaggc
caagcatattcaaaccatcacaaagtcttctgtaaccaaggctaccctta
aactcctggtcctcctgcctatgtgtttctagtgcttgacttttatatgt
gggacactgtgtctcactgaaatgttccctttaaagaagtatttttacag
aaaaaagaaaaaaaagaaaagaaaagacaaatgagaacattaaaccataa
ccaccttgcaatacttttataatagaaaggtgtaacatcaaccactagtg
aaggcaagaaagacattttgatctttc
gaattctgtttgcctactcaaaaccaaagaggcaaaataacagtcactta
aggtagagatttatctctccctcaaataaaagaagtttggagctgtctgg
agtggccatagggcttcctagtgacacaagggactgtgattctgtcttct
tactctccattcaaagcttacacaattgccaaagccttcttttattgagc
cagttcaaaattatagccaggcatggtggtgcgaacttgtcatcctagca
cttgggtggctgaaacaagagggtcatgggttcaaggccaggttaggcta
cataagccactgtctcaaaaaaaggtaattatttggaatgaggtagagga
tcaattacagtatcttataaattttaaatagctgaaattatacagagatt
gggaaagataatgttataaccaccaaactgcccattatacctttattatg
gtctttttcttctctcagtgtctctctgtctctgtctctgtttctgtgtg
tctctcatcatctctctctgtgtgtttctgtctctctctgtctctctctc
tgtcactctctgtctctctctctgtctcccccatatgtgtatattactgg
atattgaacctaatgctttttttttcagtgggtctctaggtctagaagta
agtcctgggccctgtggtggagtgctgcttgtgctggatcaatacctggt
agaacaatgggaatttaatctttgcgttatggacctacaatctcttctga
aaccttcatggtctggatagagtgtgcatggatatggtatcatgcaccca
tatcacagtatcactgagcacatgtgaaggcatcagcagtggtcaggtcc
cagtactcatggtacatgttgtgtgtgcctaagttctccacatgcactgg
tgacttttcaaacatcttgcccacaatacactatctacccctgatgactt
cttcatctttcttcaacataactggacttggccacaacagagctgggtgg
gaagatgccacatttgacttgtttccaccttcccgcttggcaagcaactc
tctattcttgtccttcttgacgatgcccaaggcctttcatggacagcccg
actttgtttccatccactacaaaaagccaacccctctttttattttgaat
tccgaagacatttcaggcttgacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89532183_89532857
seq2: B6Ng01-215H12.b_42_718

seq1  GAATTCTTTCTTCTGAATGGTTGAGTGAGTGTTGTTGGGTTTTTGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTCTGAATGGTTGAGTGAGTGTTGTTGGGTTTTTGTTTGT  50

seq1  TTGTTTGTTTGTTTGATTGGTTGTTTTGAGACAGGGTGTGCCCTACTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGATTGGTTGTTTTGAGACAGGGTGTGCCCTACTTAG  100

seq1  GATTTTACTGCTGTAAAGAGACACCATGACCAAGGTAACTTTTACTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTACTGCTGTAAAGAGACACCATGACCAAGGTAACTTTTACTAGCA  150

seq1  CAGTATTTAATTGGGTCAGCCTTACAGGTTCAGAGGTTCAGTCCTTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTAATTGGGTCAGCCTTACAGGTTCAGAGGTTCAGTCCTTTATC  200

seq1  ATTGAGGTAGAAGCATGGTAGCATCTAATCCCCCATGGCAAGGGAGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGTAGAAGCATGGTAGCATCTAATCCCCCATGGCAAGGGAGGAGC  250

seq1  TGAGAGTTCTATATCTTGATCTAAAGGCTGCTAGGAGATGACTGACTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTCTATATCTTGATCTAAAGGCTGCTAGGAGATGACTGACTTCC  300

seq1  AGGTGGCTAGGAGGAAGGTCTCCAAGACACCCCCCTCCCCCACACAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTAGGAGGAAGGTCTCCAAGACACCCCCCTCCCCCACACAGTGA  350

seq1  CACAGTTCTTCCAACAAGGCAACACCTTCTAATAGTGCCACTACCTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCTTCCAACAAGGCAACACCTTCTAATAGTGCCACTACCTAGGC  400

seq1  CAAGCATATTCAAACCATCACAAAGTCTTCTGTAACCAAGGCTACCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATATTCAAACCATCACAAAGTCTTCTGTAACCAAGGCTACCCTTA  450

seq1  AACTCCTGGTCCTCCTGCCTATGTGTTTCTAGTGCTTGACTTTTATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGGTCCTCCTGCCTATGTGTTTCTAGTGCTTGACTTTTATATGT  500

seq1  GGGACACTGTGTCTCACTGAAATGTTCCCTTTAAAGAAGTATTTTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTGTGTCTCACTGAAATGTTCCCTTTAAAGAAGTATTTTTACAG  550

seq1  AAAAAAGAAAAAAAAGAAAAGAAAAGACAAATGAGAACATTAAACCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAAAAGAAAAGAAAAGACAAATGAGAACATTAAACCATAA  600

seq1  CCACCTTGCAATAC-TTTATAATAGAAAGGTGTAACATCAACCACTAGTG  649
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCACCTTGCAATACTTTTATAATAGAAAGGTGTAACATCAACCACTAGTG  650

seq1  AAGGCAAGAAAGACA-TTTGATCTTTC  675
      ||||||||||||||| |||||||||||
seq2  AAGGCAAGAAAGACATTTTGATCTTTC  677

seq1: chr12_89742127_89743294
seq2: B6Ng01-215H12.g_68_1242 (reverse)

seq1  AGGTC-AGCCTG-AATGTCTTACGAAATACAAAATAAAAAGA-GGGTTGG  47
      ||||| |||||| |||||||| || ||| ||||||||||||| |||||||
seq2  AGGTCAAGCCTGAAATGTCTT-CGGAATTCAAAATAAAAAGAGGGGTTGG  49

seq1  CTTTTTGTGAGTGACTGGAAACAAGTACGGACTG-CCATG-AAGGCCTTG  95
      |||||||| ||||  |||||||||   ||| ||| ||||| |||||||||
seq2  CTTTTTGT-AGTGGATGGAAACAAAGTCGGGCTGTCCATGAAAGGCCTTG  98

seq1  GGCATACGTC-AGGAGGACAAG-ATAGGGAGGTGCTTGCCCAGCCGGAA-  142
      ||||| |||| || |||||||| |||| ||| |||||||| ||| |||| 
seq2  GGCAT-CGTCAAGAAGGACAAGAATAGAGAGTTGCTTGCCAAGCGGGAAG  147

seq1  GTGG-AACATGTCAAATGT-GCATCTTCACACCCAGCTCTGTTGTGGCCA  190
      |||| |||| ||||||||| |||||||| |||||||||||||||||||||
seq2  GTGGAAACAAGTCAAATGTGGCATCTTCCCACCCAGCTCTGTTGTGGCCA  197

seq1  AGTCCCAGTTATGCTGAAG-AAGATGAAGAAGTCATCAGGGGTAGATAGT  239
      ||| ||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  AGT-CCAGTTATGTTGAAGAAAGATGAAGAAGTCATCAGGGGTAGATAGT  246

seq1  GTATTGTGGGC-AGATGTTTGAGAAGTCACCAGTGCATGTGGAGAACTTA  288
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  GTATTGTGGGCAAGATGTTTGAAAAGTCACCAGTGCATGTGGAGAACTTA  296

seq1  GGCACACACAACATGTACCATGAGTACTGGGACCTGACCACTGCTGATGC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACAACATGTACCATGAGTACTGGGACCTGACCACTGCTGATGC  346

seq1  CTTCACATTGTGCTCAGTGATACTGTGATATGGGTGCATGATACCATATC  388
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACA-TGTGCTCAGTGATACTGTGATATGGGTGCATGATACCATATC  395

seq1  CATGCACACTCTATCCAGACCATGAAGGTTTCAGAAGAGATTGTAGGTCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACTCTATCCAGACCATGAAGGTTTCAGAAGAGATTGTAGGTCC  445

seq1  ATAACGCAAAGATTAAATTCCCATTGTTCTACCAGGTATTGATCCAGCAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGCAAAGATTAAATTCCCATTGTTCTACCAGGTATTGATCCAGCAC  495

seq1  AAGCAGCACTCCACCACAGGGCCCAGGACTTACTTCTAGACCTAGAGACC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCACTCCACCACAGGGCCCAGGACTTACTTCTAGACCTAGAGACC  545

seq1  CACTGAAAAAAAAAGCATTAGGTTCAATATCCAGTAATATACACATATGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAAAAAAAGCATTAGGTTCAATATCCAGTAATATACACATATGG  595

seq1  GGGAGACAGAGAGAGAGACAGAGAGTGACAGAGAGAGAGACAGAGAGAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACAGAGAGAGAGACAGAGAGTGACAGAGAGAGAGACAGAGAGAGA  645

seq1  CAGAAACACACAGAGAGAGATGATGAGAGACACACAGAAACAGAGACAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACACAGAGAGAGATGATGAGAGACACACAGAAACAGAGACAGA  695

seq1  GACAGAGAGACACTGAGAGAAGAAAAAGACCATAATAAAGGTATAATGGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGACACTGAGAGAAGAAAAAGACCATAATAAAGGTATAATGGG  745

seq1  CAGTTTGGTGGTTATAACATTATCTTTCCCAATCTCTGTATAATTTCAGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGTGGTTATAACATTATCTTTCCCAATCTCTGTATAATTTCAGC  795

seq1  TATTTAAAATTTATAAGATACTGTAATTGATCCTCTACCTCATTCCAAAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAATTTATAAGATACTGTAATTGATCCTCTACCTCATTCCAAAT  845

seq1  AATTACCTTTTTTTGAGACAGTGGCTTATGTAGCCTAACCTGGCCTTGAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTTTTTTTGAGACAGTGGCTTATGTAGCCTAACCTGGCCTTGAA  895

seq1  CCCATGACCCTCTTGTTTCAGCCACCCAAGTGCTAGGATGACAAGTTCGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGACCCTCTTGTTTCAGCCACCCAAGTGCTAGGATGACAAGTTCGC  945

seq1  ACCACCATGCCTGGCTATAATTTTGAACTGGCTCAATAAAAGAAGGCTTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATGCCTGGCTATAATTTTGAACTGGCTCAATAAAAGAAGGCTTT  995

seq1  GGCAATTGTGTAAGCTTTGAATGGAGAGTAAGAAGACAGAATCACAGTCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGTGTAAGCTTTGAATGGAGAGTAAGAAGACAGAATCACAGTCC  1045

seq1  CTTGTGTCACTAGGAAGCCCTATGGCCACTCCAGACAGCTCCAAACTTCT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTCACTAGGAAGCCCTATGGCCACTCCAGACAGCTCCAAACTTCT  1095

seq1  TTTATTTGAGGGAGAGATAAATCTCTACCTTAAGTGACTGTTATTTTGCC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGAGGGAGAGATAAATCTCTACCTTAAGTGACTGTTATTTTGCC  1145

seq1  TCTTTGGTTTTGAGTAGGCAAACAGAATTC  1168
      ||||||||||||||||||||||||||||||
seq2  TCTTTGGTTTTGAGTAGGCAAACAGAATTC  1175