BAC Information

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BAC

Clone NameB6Ng01-216B14
Chromosome12 (Build37)
Map Location 112,241,934 - 112,304,751
singlet/doubletdoublet
Overlap gene6030440G07Rik, Rcor1
Upstream geneLOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9
Downstream gene4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216B14.bB6Ng01-216B14.g
ACCGA032875GA032876
length1,032845
definitionB6Ng01-216B14.b B6Ng01-216B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,241,934 - 112,242,964)(112,303,908 - 112,304,751)
sequence
gaattcttcactgggattcacctgatggtacacacctttaatcccagccc
tcagaaagcagaggcaggtagaactctgagttcaagatcagctagcacac
acagcaaattccaaaccagccagggctacatagtaagactctgtttcaag
aagaagaagaagaaaaaaaaaaccttaaaaaaaaaaaggctttatttgac
tttatgtgtgtgtgtgcttggcttgcaggccctgtggcagaggaggtcag
aaggagatattcaatcccctggagccagagttaggggtggttgtgagcca
ccacttgggtgggtgctgggaactgaagctgtgctctcttctagagcagc
cagtgcctttccctgctgagccagctcttcagccccaacaatttctgact
agggttgcatcaagtcagcctcgaacctccgctcacccaccacttgagaa
ccgaacgctttgttcccaacctctgggcacctgttagacataatggcgtg
aacccttaaacagtagcccagcggcagaagtgactgttgccagagctggg
cgtggcttgcctgtgatcccagtcttaagaaggtggagaccagaggattc
tgtcattggaggctctgtagttctaagtcatcctcagctacacagggcgt
ggagacactgcccaaaatagtaacagtcacccaagattgatgtttcgaaa
tgatgcttttgagtaacttcaccttcagatggctgtgggtttgggtataa
tgagaccattgttgaagagggagtgggacatgtcagaatttggaaggctc
ctcagtgtaggttgctgcctttatgtctctgagttctgtgttgacagagt
gggcagtgtccccctggcatgtgggacaggcggcctcctacacatgcaga
agttgccagggaccatgcatgttcaaagcacgatgagccctttgcctcac
cctgctagtccccagtccccaagtgatactttgttttggtttggagacag
ctttcatatgtatcccaggtggcttcaattca
gaattctctttcctttcatcctgctcctgaatcccatatccaaagcaagt
tttgagtaaccaagtaagtaagtctattagggataaatagccaggcttgg
tggctcctgcctgtagtcatgccatcagagagctggagagaagagagagg
atcaagagttcaaggccaaagatacttgctgagtttgaagacagcctttg
ttacaggagattaaaacaaaacaaacaaacaaaactacaacaaaaaccaa
ctcaacaaaactgactagtgagaactacagaagtgggcaagagatggctc
agtggctaggagaacacactgctcatcttgaggctccgagttcaattccc
agcacccacccagctggcttacagctcccagggatctgacccctgacctc
tgcaggcactgcactcaatgcacacagatagatctttttatttttaatgt
aaagagagaagcagaggcaggtgctacaaataaacagagaaggcagttca
taaacactaaggctctgaatcaagacagcagcatggtggggactcccagc
ttctaagtgtgtgagatgactggacgtgtgcacatactccttacaggctc
tgcccttaagagagagatagaccatcaacaccctgacagcatatgttcct
atctgatgctcagatcttgatttcttttttttttctttttttcttttttt
tttttttaggtttttcgagacagggtttctcttttgtagccctggctgcc
ctggaactcactctgtagaccaggctggcctcgaacttagatattccacc
tgctcctgcctcccgagtgctgggttaaaaggcatgcgtcactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112241934_112242964
seq2: B6Ng01-216B14.b_46_1077

seq1  GAATTCTTCACTGGGATTCACCTGATGGTACACACCTTTAATCCCAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTGGGATTCACCTGATGGTACACACCTTTAATCCCAGCCC  50

seq1  TCAGAAAGCAGAGGCAGGTAGAACTCTGAGTTCAAGATCAGCTAGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCAGAGGCAGGTAGAACTCTGAGTTCAAGATCAGCTAGCACAC  100

seq1  ACAGCAAATTCCAAACCAGCCAGGGCTACATAGTAAGACTCTGTTTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATTCCAAACCAGCCAGGGCTACATAGTAAGACTCTGTTTCAAG  150

seq1  AAGAAGAAGAAGAAAAAAAAAACCTTAAAAAAAAAAAGGCTTTATTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAAAAAAAAACCTTAAAAAAAAAAAGGCTTTATTTGAC  200

seq1  TTTATGTGTGTGTGTGCTTGGCTTGCAGGCCCTGTGGCAGAGGAGGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTGTGTGTGCTTGGCTTGCAGGCCCTGTGGCAGAGGAGGTCAG  250

seq1  AAGGAGATATTCAATCCCCTGGAGCCAGAGTTAGGGGTGGTTGTGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATATTCAATCCCCTGGAGCCAGAGTTAGGGGTGGTTGTGAGCCA  300

seq1  CCACTTGGGTGGGTGCTGGGAACTGAAGCTGTGCTCTCTTCTAGAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGGTGGGTGCTGGGAACTGAAGCTGTGCTCTCTTCTAGAGCAGC  350

seq1  CAGTGCCTTTCCCTGCTGAGCCAGCTCTTCAGCCCCAACAATTTCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTTTCCCTGCTGAGCCAGCTCTTCAGCCCCAACAATTTCTGACT  400

seq1  AGGGTTGCATCAAGTCAGCCTCGAACCTCCGCTCACCCACCACTTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGCATCAAGTCAGCCTCGAACCTCCGCTCACCCACCACTTGAGAA  450

seq1  CCGAACGCTTTGTTCCCAACCTCTGGGCACCTGTTAGACATAATGGCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACGCTTTGTTCCCAACCTCTGGGCACCTGTTAGACATAATGGCGTG  500

seq1  AACCCTTAAACAGTAGCCCAGCGGCAGAAGTGACTGTTGCCAGAGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTAAACAGTAGCCCAGCGGCAGAAGTGACTGTTGCCAGAGCTGGG  550

seq1  CGTGGCTTGCCTGTGATCCCAGTCTTAAGAAGGTGGAGACCAGAGGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTTGCCTGTGATCCCAGTCTTAAGAAGGTGGAGACCAGAGGATTC  600

seq1  TGTCATTGGAGGCTCTGTAGTTCTAAGTCATCCTCAGCTACACAGGGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGGAGGCTCTGTAGTTCTAAGTCATCCTCAGCTACACAGGGCGT  650

seq1  GGAGACACTGCCCAAAATAGTAACAGTCACCCAAGATTGATGTTTCGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACTGCCCAAAATAGTAACAGTCACCCAAGATTGATGTTTCGAAA  700

seq1  TGATGC-TTTGAGTAACTTCACCTTCAGATGGCTGTGGGTTTGGGTATAA  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTTTGAGTAACTTCACCTTCAGATGGCTGTGGGTTTGGGTATAA  750

seq1  TGAGACCATTG-TGAAGAGGGAGTGGGACATGTCAGAA-TTGGAAGGCTC  797
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TGAGACCATTGTTGAAGAGGGAGTGGGACATGTCAGAATTTGGAAGGCTC  800

seq1  CTCAGTGTAGGTTGCTGCCTTTATGTCTCTGAGTTCTGTGTTGACAGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CTCAGTGTAGGTTGCTGCCTTTATGTCTCTGAGTTCTGTGTTGACAGAGT  850

seq1  TGGCAGTGTCCCCCTGGCATGTGGGACAGGCGG-CTCCTACACATGCAGA  896
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGCAGTGTCCCCCTGGCATGTGGGACAGGCGGCCTCCTACACATGCAGA  900

seq1  AGTTGCCAGGGAACATGCATGTCAAAAAGCACGATGAGCCCTTTG-CTCA  945
      |||||||||||| |||||||||   |||||||||||||||||||| ||||
seq2  AGTTGCCAGGGACCATGCATGT-TCAAAGCACGATGAGCCCTTTGCCTCA  949

seq1  -CCTGCTAGTCCCCAAGTCCCCAAGTGATACTTTGTTTTGTTTTGAGACA  994
       ||||||||||||| ||||||||||||||||||||||||| |||| || |
seq2  CCCTGCTAGTCCCC-AGTCCCCAAGTGATACTTTGTTTTGGTTTG-GAGA  997

seq1  AAGCTTCACTATGTATCCCAGGGTGGCTTCAAATTCA  1031
       |||||   ||||||||||| ||||||||| ||||||
seq2  CAGCTTTCATATGTATCCCA-GGTGGCTTC-AATTCA  1032

seq1: chr12_112303908_112304751
seq2: B6Ng01-216B14.g_71_915 (reverse)

seq1  TGAGTGTGGTGGCGCATGCCTTTAAACCCAGCACTCGGGAGGCAGAGGCA  50
      |||     ||| ||||||||||| |||||||||||||||||||||  |||
seq2  TGA-----GTGACGCATGCCTTTTAACCCAGCACTCGGGAGGCAGGAGCA  45

seq1  GGTGG-ATATCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  99
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATATCTAAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  95

seq1  GGCAGCCAGGGCTAC-AAAGAGAAACCCTGTCTCGAAAAA-CTAAAAAAA  147
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  GGCAGCCAGGGCTACAAAAGAGAAACCCTGTCTCGAAAAACCTAAAAAAA  145

seq1  AAAAAAAGAAAAAA--GAAAAAAAAAGAAATCAAGATCTGAGCATCAGAT  195
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAAAAAGAAAAAAAAAAGAAATCAAGATCTGAGCATCAGAT  195

seq1  AGGAACATATGCTGTCAGGGTGTTGATGGTCTATCTCTCTCTT-AGGGCA  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGAACATATGCTGTCAGGGTGTTGATGGTCTATCTCTCTCTTAAGGGCA  245

seq1  GAGCCTGTAAGGAGTATGTGCACACGTCCAGTCATCTCACACACTTAGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGTAAGGAGTATGTGCACACGTCCAGTCATCTCACACACTTAGAA  295

seq1  GCTGGGAGTCCCCACCATGCTGCTGTCTTGATTCAGAGCCTTAGTGTTTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGTCCCCACCATGCTGCTGTCTTGATTCAGAGCCTTAGTGTTTA  345

seq1  TGAACTGCCTTCTCTGTTTATTTGTAGCACCTGCCTCTGCTTCTCTCTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGCCTTCTCTGTTTATTTGTAGCACCTGCCTCTGCTTCTCTCTTT  395

seq1  ACATTAAAAATAAAAAGATCTATCTGTGTGCATTGAGTGCAGTGCCTGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAAATAAAAAGATCTATCTGTGTGCATTGAGTGCAGTGCCTGCA  445

seq1  GAGGTCAGGGGTCAGATCCCTGGGAGCTGTAAGCCAGCTGGGTGGGTGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGGGGTCAGATCCCTGGGAGCTGTAAGCCAGCTGGGTGGGTGCT  495

seq1  GGGAATTGAACTCGGAGCCTCAAGATGAGCAGTGTGTTCTCCTAGCCACT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGAACTCGGAGCCTCAAGATGAGCAGTGTGTTCTCCTAGCCACT  545

seq1  GAGCCATCTCTTGCCCACTTCTGTAGTTCTCACTAGTCAGTTTTGTTGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTTGCCCACTTCTGTAGTTCTCACTAGTCAGTTTTGTTGAG  595

seq1  TTGGTTTTTGTTGTAGTTTTGTTTGTTTGTTTTGTTTTAATCTCCTGTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGTTGTAGTTTTGTTTGTTTGTTTTGTTTTAATCTCCTGTAA  645

seq1  CAAAGGCTGTCTTCAAACTCAGCAAGTATCTTTGGCCTTGAACTCTTGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGTCTTCAAACTCAGCAAGTATCTTTGGCCTTGAACTCTTGAT  695

seq1  CCTCTCTCTTCTCTCCAGCTCTCTGATGGCATGACTACAGGCAGGAGCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTTCTCTCCAGCTCTCTGATGGCATGACTACAGGCAGGAGCCA  745

seq1  CCAAGCCTGGCTATTTATCCCTAATAGACTTACTTACTTGGTTACTCAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGGCTATTTATCCCTAATAGACTTACTTACTTGGTTACTCAAA  795

seq1  ACTTGCTTTGGATATGGGATTCAGGAGCAGGATGAAAGGAAAGAGAATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTTGGATATGGGATTCAGGAGCAGGATGAAAGGAAAGAGAATTC  845