BAC Information

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BAC

Clone NameB6Ng01-216I20
Chromosome12 (Build37)
Map Location 11,239,587 - 11,383,245
singlet/doubletdoublet
Overlap gene5830483C08Rik, Smc6, Vsnl1
Upstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1
Downstream geneEG209550, LOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216I20.bB6Ng01-216I20.g
ACCGA033212GA033213
length1,166960
definitionB6Ng01-216I20.b B6Ng01-216I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,239,587 - 11,240,775)(11,382,281 - 11,383,245)
sequence
gaattcaccaccaatcagtatcccaacatctgctcactgaatgctttctt
tgctaatccctgtatggatgccaaggattcagaaatactggatgcttggc
atattgtaggaaaaatgcaaacaacccccaaaacattggcaggtaatctt
tcaaaagcatataaggaatagtaaggccccagagatgctatttacaccga
gttttcccatgagttagctagttggtaaaatagagagggggtaaggtata
aacttctgagcaaggttctgaggaatccaaaaatcaaaattaattttggc
atcagagagaaaatggaaaattttttagaagacaaatattgtatttcatg
gaggtatgggtaataatcttggaaatacaaagaatagaagccacttggga
tgataagttattccatttgtacgaattctcaagagacagggaaagtatgc
atttcatgagcaaaggaagtgagctctgctcagggaaaagcaagtatttt
tgagtggccaaaactgagctttacaacagagaatgcctcatgctgaaacc
agcgactgccacggccatttgagctatgctagggttcctaggctacattc
tgcaaagaatgtatattgctgtatttaggttccagtggactagggagagg
ccatgcatagatagttattgtaccaagcagttttctagttttcgaaccca
caaagttaaaagtcttcccttttgcttgcattctagcttgggaaacagaa
aataaaaagccacaagcaaacaactgcacaattgtgtcaggaattggtaa
tagaactatagatagaagtagaattatactaaaaagtcaggaaagatgtc
taggtctgagataagaactgagtgtacaaacataaatgcagggactcagg
gctggagagatggctcagtggatagagcaccgactgctcttccagaggtc
ctgtgttcaattcccagcatccacatgatgattcacaacatctataatgg
gtccaatggcctcttctgtgttgtctgagacagtgacagtgtactcacat
acattaaataataatcttaaaaataatacataatgaggagaatctggatt
ccactaaggctttttttcatttacaaatagtattgacatcatgcagtcca
tacaccatgatacatg

gaattcatttacatttggaatgtttgccaacatgactgaggctgcacttc
aacttgaattaatgtagaaaacaagaactaggtcttaaatctcaaagaaa
agacaataaggagagagtctaggaaaatacagttctgtgtgaggctccaa
ttgcatttcatcgcagtgaaatttggagaataatgaactacccatgtggc
ttgagttagagatagcactcagcccccagagaggtccatgtgataacctt
ctcctgtctctggggtgtgaaatcactttgtgcagcttctccaccctggg
atttggctttctcatgataaggttagtgtagttagaggggtattgataat
tctgccaccatcacatcctaaaggaatgcttttacaccatacctcagctc
aagattgaaaagagctccagcaagtcccaagtcacattttcctccatttt
ccatatgggcaccaagatatgtgtgaatgggacagggatatacaaaatag
atccactacaccaattaatgcccaaaaggatgtatctgatagtgccagtg
tgaagccaaatagacctgctttctgcttagttatctgcagccagttgtct
gaaaacaacttgttgtcagaaatagacccagagaagaataaatggccagt
ttctcttaggaggatgcagctgagcatgcaaattcatttattaatgtgcc
agtgtaaggccgctttgcttcactaggtttttctgactctttgggttttt
tttttgtttttttttatttatttttttttttaattttttattaggtattt
agctcatttacatttccaatgctataccaaaagttcccccattacccacc
cacacccactcccctaccaccactcccctttttgggcctggcgttcccct
gtactggggcatataagtttggcgtgtcatgtgcctctcttccagtgatt
gcgactaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11239587_11240775
seq2: B6Ng01-216I20.b_51_1216

seq1  GAATTCACCACCAATCAGTATCCCAACATCTGCTCACTGAATGCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACCAATCAGTATCCCAACATCTGCTCACTGAATGCTTTCTT  50

seq1  TGCTAATCCCTGTATGGATGCCAAGGATTCAGAAATACTGGATGCTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATCCCTGTATGGATGCCAAGGATTCAGAAATACTGGATGCTTGGC  100

seq1  ATATTGTAGGAAAAATGCAAACAACCCCCAAAACATTGGCAGGTAATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAGGAAAAATGCAAACAACCCCCAAAACATTGGCAGGTAATCTT  150

seq1  TCAAAAGCATATAAGGAATAGTAAGGCCCCAGAGATGCTATTTACACCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCATATAAGGAATAGTAAGGCCCCAGAGATGCTATTTACACCGA  200

seq1  GTTTTCCCATGAGTTAGCTAGTTGGTAAAATAGAGAGGGGGTAAGGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCATGAGTTAGCTAGTTGGTAAAATAGAGAGGGGGTAAGGTATA  250

seq1  AACTTCTGAGCAAGGTTCTGAGGAATCCAAAAATCAAAATTAATTTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGAGCAAGGTTCTGAGGAATCCAAAAATCAAAATTAATTTTGGC  300

seq1  ATCAGAGAGAAAATGGAAAATTTTTTAGAAGACAAATATTGTATTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAGAAAATGGAAAATTTTTTAGAAGACAAATATTGTATTTCATG  350

seq1  GAGGTATGGGTAATAATCTTGGAAATACAAAGAATAGAAGCCACTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGGGTAATAATCTTGGAAATACAAAGAATAGAAGCCACTTGGGA  400

seq1  TGATAAGTTATTCCATTTGTACGAATTCTCAAGAGACAGGGAAAGTATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTTATTCCATTTGTACGAATTCTCAAGAGACAGGGAAAGTATGC  450

seq1  ATTTCATGAGCAAAGGAAGTGAGCTCTGCTCAGGGAAAAGCAAGTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGAGCAAAGGAAGTGAGCTCTGCTCAGGGAAAAGCAAGTATTTT  500

seq1  TGAGTGGCCAAAACTGAGCTTTACAACAGAGAATGCCTCATGCTGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCCAAAACTGAGCTTTACAACAGAGAATGCCTCATGCTGAAACC  550

seq1  AGCGACTGCCACGGCCATTTGAGCTATGCTAGGGTTCCTAGGCTACATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACTGCCACGGCCATTTGAGCTATGCTAGGGTTCCTAGGCTACATTC  600

seq1  TGCAAAGAATGTATATTGCTGTATTTAGGTTCCAGTGGACTAGGGAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAATGTATATTGCTGTATTTAGGTTCCAGTGGACTAGGGAGAGG  650

seq1  CCATGCATAGATAGTTATTGTACCAAGCAGTTTTCTAGTTTTCGAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATAGATAGTTATTGTACCAAGCAGTTTTCTAGTTTTCGAACCCA  700

seq1  CAAAGTTAAAAGTCTTCCCTTTTGCTTGCATTCTAGCTTGGGAAACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAAAAGTCTTCCCTTTTGCTTGCATTCTAGCTTGGGAAACAGAA  750

seq1  AATAAAAAGCCACAAGCAAACAACTGCACAATTGTGTCAGGAATTGGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGCCACAAGCAAACAACTGCACAATTGTGTCAGGAATTGGTAA  800

seq1  TAGAACTATAGATAGAAGTAGAATTATACTAAAAAGTCAGGAAAGATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTATAGATAGAAGTAGAATTATACTAAAAAGTCAGGAAAGATGTC  850

seq1  TAGGTCTGAGATAAGAACTGAGTGTACAAACATAAATGCAGGGACTCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGAGATAAGAACTGAGTGTACAAACATAAATGCAGGGACTCAGG  900

seq1  GCTGGAGAGATGGCTCAGTGGATAAGAGCACCGACTGCTCTTCCAGAGGT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTGGAGAGATGGCTCAGTGGAT-AGAGCACCGACTGCTCTTCCAGAGGT  949

seq1  CCTGTGTTCAATTCCCAGCAATCACATGATGATTCACAACCATCTATAAT  1000
      ||||||||||||||||||||  ||||||||||||||||| ||||||||||
seq2  CCTGTGTTCAATTCCCAGCATCCACATGATGATTCACAA-CATCTATAAT  998

seq1  GGGTCCAATGCCCTCTTCTGGTGTGTCTGAGAACAGTGACAGTGTACTCA  1050
      |||||||||| |||||||||   |||||||| ||||||||||||||||||
seq2  GGGTCCAATGGCCTCTTCTGTGTTGTCTGAG-ACAGTGACAGTGTACTCA  1047

seq1  CATACATAAAATAAATAAATCTTTAAAAAATAAATACATAAATGTAGGAG  1100
      ||||||| ||||||   ||||||  |||||| ||||||| |||| |||||
seq2  CATACATTAAATAA--TAATCTT--AAAAAT-AATACAT-AATG-AGGAG  1090

seq1  -ATCTGAATTCCACCTTTAGTGTTTTTTTTTTAAATTAAAAAATTATGTT  1149
       ||||| |||||||   ||  | |||||||    ||| | ||||  | ||
seq2  AATCTGGATTCCAC---TAAGGCTTTTTTT---CATTTACAAATAGTATT  1134

seq1  TATGGGCACCATTCATGCATGTCCATACACCACG-TACATG  1189
       |       || ||||||| |||||||||||| | ||||||
seq2  GA-------CA-TCATGCA-GTCCATACACCATGATACATG  1166


seq1: chr12_11382281_11383245
seq2: B6Ng01-216I20.g_69_1028 (reverse)

seq1  GCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTT  50
      |||||||| || |||||||| ||||||||| |||  ||||||| ||  ||
seq2  GCCTAGTC-GCAATCACTGG-AAGAGAGGCACAT--GACACGCCAAACTT  46

seq1  ATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGG  100
      |||||||||||||||||||||||||||| ||||||| |||||||||   |
seq2  ATATGCCCCAGTACAGGGGAACGCCAGGCCCAAAAA-GGGGAGTGG--TG  93

seq1  GTAGGGGAGTGGGTGTGGGTGGGT-ATGGGGG-ACTTTTGGTATAGCATT  148
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  GTAGGGGAGTGGGTGTGGGTGGGTAATGGGGGAACTTTTGGTATAGCATT  143

seq1  GGAAATGTAAATGAGCTAAATACCTAATAAAAAATT-AAAAAAAAAATAA  197
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGAAATGTAAATGAGCTAAATACCTAATAAAAAATTAAAAAAAAAAATAA  193

seq1  ATAAAAAAAAAACAAAAAAAAAACCCAAAGAGTCAGAAAAACCTAGTGAA  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AAAAAAAAACAAAAAAAAAACCCAAAGAGTCAGAAAAACCTAGTGAA  242

seq1  GCAAAGCGGCCTTACACTGGCACATTAATAAATGAATTTGCATGCTCAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCGGCCTTACACTGGCACATTAATAAATGAATTTGCATGCTCAGC  292

seq1  TGCATCCTCCTAAGAGAAACTGGCCATTTATTCTTCTCTGGGTCTATTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTCCTAAGAGAAACTGGCCATTTATTCTTCTCTGGGTCTATTTC  342

seq1  TGACAACAAGTTGTTTTCAGACAACTGGCTGCAGATAACTAAGCAGAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAAGTTGTTTTCAGACAACTGGCTGCAGATAACTAAGCAGAAAG  392

seq1  CAGGTCTATTTGGCTTCACACTGGCACTATCAGATACATCCTTTTGGGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTATTTGGCTTCACACTGGCACTATCAGATACATCCTTTTGGGCA  442

seq1  TTAATTGGTGTAGTGGATCTATTTTGTATATCCCTGTCCCATTCACACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGTGTAGTGGATCTATTTTGTATATCCCTGTCCCATTCACACAT  492

seq1  ATCTTGGTGCCCATATGGAAAATGGAGGAAAATGTGACTTGGGACTTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTGCCCATATGGAAAATGGAGGAAAATGTGACTTGGGACTTGCT  542

seq1  GGAGCTCTTTTCAATCTTGAGCTGAGGTATGGTGTAAAAGCATTCCTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTTTTCAATCTTGAGCTGAGGTATGGTGTAAAAGCATTCCTTTA  592

seq1  GGATGTGATGGTGGCAGAATTATCAATACCCCTCTAACTACACTAACCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGATGGTGGCAGAATTATCAATACCCCTCTAACTACACTAACCTT  642

seq1  ATCATGAGAAAGCCAAATCCCAGGGTGGAGAAGCTGCACAAAGTGATTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGAAAGCCAAATCCCAGGGTGGAGAAGCTGCACAAAGTGATTTC  692

seq1  ACACCCCAGAGACAGGAGAAGGTTATCACATGGACCTCTCTGGGGGCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCAGAGACAGGAGAAGGTTATCACATGGACCTCTCTGGGGGCTGA  742

seq1  GTGCTATCTCTAACTCAAGCCACATGGGTAGTTCATTATTCTCCAAATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATCTCTAACTCAAGCCACATGGGTAGTTCATTATTCTCCAAATTT  792

seq1  CACTGCGATGAAATGCAATTGGAGCCTCACACAGAACTGTATTTTCCTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGATGAAATGCAATTGGAGCCTCACACAGAACTGTATTTTCCTAG  842

seq1  ACTCTCTCCTTATTGTCTTTTCTTTGAGATTTAAGACCTAGTTCTTGTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCCTTATTGTCTTTTCTTTGAGATTTAAGACCTAGTTCTTGTTT  892

seq1  TCTACATTAATTCAAGTTGAAGTGCAGCCTCAGTCATGTTGGCAAACATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTAATTCAAGTTGAAGTGCAGCCTCAGTCATGTTGGCAAACATT  942

seq1  CCAAATGTAAATGAATTC  965
      ||||||||||||||||||
seq2  CCAAATGTAAATGAATTC  960


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