BAC Information

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BAC

Clone NameB6Ng01-218F24
Chromosome12 (Build37)
Map Location 41,671,009 - 41,755,036
singlet/doubletdoublet
Overlap geneLOC100043157
Upstream geneArl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4, LOC638487
Downstream geneLOC100043162, Lrrn3, Immp2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218F24.bB6Ng01-218F24.g
ACCGA034522GA034523
length1,2001,166
definitionB6Ng01-218F24.b B6Ng01-218F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,671,009 - 41,672,210)(41,753,867 - 41,755,036)
sequence
gaattcatcttcatgcaaatgaagcattcccagcacctcagcttcaacca
ataacgtacctttaagacgcttcccaaggtttgtatagcctttgtttccc
ccaatatagagagctgtttcactgaaaaccatctccagagaaggctgctt
ctcctgccttccaccatccaaaatcgtcttaacccaccaaggcagctaag
cttcgctccctccagctgagcccagtgcacaatgcgcttggataccccaa
ggggagaagcaggctaggagtggtgaaaatataatcatgtttggtttata
ctcatggtttttagaagtaaatcccagaacctctgcattagcttctgcat
tagaatatctaactgtggagggactcgaacatgaaatttcaactaggatc
tcagacgactcttgttataggtgatctgaagagacctcactcaagaagaa
gccctagtatctacatgtcgggtgctcttcgccagctaggataatgggtt
gagatgacagcatgtcaacataggactaagttagataatctgtccgatgt
cagcagagagcgtaaaaatacagtcagcagagggtggaggctgtgttgac
ttttcatcgacatgcctgggagaagtagtttaaagagaagaaggagccag
agtttcagaggctgcaggctataatcgactagctccgttgtttctggact
tgtgagaggaagcacattctggtagagccagaatcgttccctgtggaagc
ctgggaacagtccaccgtgcttgtgggctgcccctttgttttacgcctcc
tggacccacagcccgtgggatgatggtgctgttgcatccagatcagctct
tcctctttgttaatcacctctagaaaagacctcacagaccagtttagaag
taagctttgatattcagagctctcacaattaggaccaactatcatgatgt
ttgttttgttttttccatgatatttttattaatttttgagactttcatgt
acatctacaatgtattttaatcacccttcgttcccctctgtcttctcaca
ccccactacacacagatcacagttggtattttttgtttggcatggtaagt
catctgagttagcctggaagattccttgtaaggaaaacaatccacttaaa
agatcaggctagaaacacacactaaccacatggtttactaggctctcctg


gaattcatataccaaacaactattcttaaatgaattgctttatgatttat
tataagtacatgtttgatttacatacctactttacataccctatatgcca
aggggttttttaaaatgtgttagacaaaagggagtaaatggaaaaattta
agaatctctaagcgtacacatcatctctaatagcatatgatgagtttgaa
aggctttggtactttaatctggaaacccaaatgctacttgttattctttt
tctgtaaattaagttgctaatgtgtaagaaagtagacttgaaagtggact
ttttaacttggaggcagaatttctgagtttgaggccagcctagtatatag
accaggacaagttcgaagacagggctatacagaaaaacttgtctaaaaga
aagaaagaaggaaaggacagaggaggcagggggcagggagaagaaaatga
accttttaaaacatagcaagttccttttttaaattaaaaaaaaaaaaatg
tctgctttaggtcaggctaacctagaactcaaaatctgcctgcctctgcc
tcatttgtccaggtgtgaaccaagacactcagctcaataggttctaaagt
gaggttttgctttctttaaaaatatttttcttctacaaaaacttagtgta
aaaactcaccaagaacaggaagtctttccccttgttaactcgtaagaaca
atgactctagaagacacctgtgggaaatgtgcttctatgaccaggtgctg
acatttgaataaaacatcactcttgtgcccagtagaccagagctcatgat
agaaatggcacacactgccgcagtacagctgatgtgcccgtagtaatcta
ctgacaaagtgtactccttagcaaagcgaaccagatgtctgctgtgaagt
ggagtgtctgtagacgtgtctttctcagctccaaatgaagtattagatac
gctaaatacacagcttagctatatatcagacccacaacctagcaaatcct
gacagtttgggacatgaagcagcagcaatttttattatatgccttaataa
accaaagatggttttctaaaaggaatcttaacttgagcactcagctaatg
tgtaagccttgcctgctcacttttggcatggttccgatagaaccatttca
ctgatttcaagctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41671009_41672210
seq2: B6Ng01-218F24.b_43_1242

seq1  GAATTCATCTTCATGCAAATGAAGCATTCCCAGCACCTCAGCTTCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCATGCAAATGAAGCATTCCCAGCACCTCAGCTTCAACCA  50

seq1  ATAACGTACCTTTAAGACGCTTCCCAAGGTTTGTATAGCCTTTGTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGTACCTTTAAGACGCTTCCCAAGGTTTGTATAGCCTTTGTTTCCC  100

seq1  CCAATATAGAGAGCTGTTTCACTGAAAACCATCTCCAGAGAAGGCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATAGAGAGCTGTTTCACTGAAAACCATCTCCAGAGAAGGCTGCTT  150

seq1  CTCCTGCCTTCCACCATCCAAAATCGTCTTAACCCACCAAGGCAGCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTTCCACCATCCAAAATCGTCTTAACCCACCAAGGCAGCTAAG  200

seq1  CTTCGCTCCCTCCAGCTGAGCCCAGTGCACAATGCGCTTGGATACCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCTCCCTCCAGCTGAGCCCAGTGCACAATGCGCTTGGATACCCCAA  250

seq1  GGGGAGAAGCAGGCTAGGAGTGGTGAAAATATAATCATGTTTGGTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGCAGGCTAGGAGTGGTGAAAATATAATCATGTTTGGTTTATA  300

seq1  CTCATGGTTTTTAGAAGTAAATCCCAGAACCTCTGCATTAGCTTCTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTTTTTAGAAGTAAATCCCAGAACCTCTGCATTAGCTTCTGCAT  350

seq1  TAGAATATCTAACTGTGGAGGGACTCGAACATGAAATTTCAACTAGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATCTAACTGTGGAGGGACTCGAACATGAAATTTCAACTAGGATC  400

seq1  TCAGACGACTCTTGTTATAGGTGATCTGAAGAGACCTCACTCAAGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGACTCTTGTTATAGGTGATCTGAAGAGACCTCACTCAAGAAGAA  450

seq1  GCCCTAGTATCTACATGTCGGGTGCTCTTCGCCAGCTAGGATAATGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGTATCTACATGTCGGGTGCTCTTCGCCAGCTAGGATAATGGGTT  500

seq1  GAGATGACAGCATGTCAACATAGGACTAAGTTAGATAATCTGTCCGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACAGCATGTCAACATAGGACTAAGTTAGATAATCTGTCCGATGT  550

seq1  CAGCAGAGAGCGTAAAAATACAGTCAGCAGAGGGTGGAGGCTGTGTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGAGCGTAAAAATACAGTCAGCAGAGGGTGGAGGCTGTGTTGAC  600

seq1  TTTTCATCGACATGCCTGGGAGAAGTAGTTTAAAGAGAAGAAGGAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCGACATGCCTGGGAGAAGTAGTTTAAAGAGAAGAAGGAGCCAG  650

seq1  AGTTTCAGAGGCTGCAGGCTATAATCGACTAGCTCCGTTGTTTCTGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAGGCTGCAGGCTATAATCGACTAGCTCCGTTGTTTCTGGACT  700

seq1  TGTGAGAGGAAGCACATTCTGGTAGAGCCAGAATCGTTCCCTGTGGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGGAAGCACATTCTGGTAGAGCCAGAATCGTTCCCTGTGGAAGC  750

seq1  CTGGGAACAGTCCACCGTGCTTGTGGGCTGCCCCTTTGTTTTACGCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACAGTCCACCGTGCTTGTGGGCTGCCCCTTTGTTTTACGCCTCC  800

seq1  TGGACCCACAGCCCGTGGGATGATGGTGCTGTTGCATCCAGATCAGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCACAGCCCGTGGGATGATGGTGCTGTTGCATCCAGATCAGCTCT  850

seq1  TCCTCTTTGTTAATCACCTCTAGAAAAGACCTCACAGACCAGTTTAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTGTTAATCACCTCTAGAAAAGACCTCACAGACCAGTTTAGAAG  900

seq1  TAAGCTTTGATATTCAGAGCTCTCACAATTAGGACCAACTATCATGATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTGATATTCAGAGCTCTCACAATTAGGACCAACTATCATGATGT  950

seq1  TTGTTTTGTTTTTTCCATGATATTTTTATTAATTTTTGAGACTTTCATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTCCATGATATTTTTATTAATTTTTGAGACTTTCATGT  1000

seq1  ACATCTACAATGTATTTTAATCACCC-TCGTTCCCCTCTGTCTTCTCACA  1049
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACATCTACAATGTATTTTAATCACCCTTCGTTCCCCTCTGTCTTCTCACA  1050

seq1  -CCCACTACACACAGATCACAGTTTGTATTTTTTG-TTGGCATGGTAAGT  1097
       ||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  CCCCACTACACACAGATCACAGTTGGTATTTTTTGTTTGGCATGGTAAGT  1100

seq1  CATTCTGAGTTTTAGCTGGAAAGATTCCTTG-AAAGAAAACAAT-CACTT  1145
      || ||||||  |||||  | ||||||||||| || ||||||||| |||||
seq2  CA-TCTGAG--TTAGCCTGGAAGATTCCTTGTAAGGAAAACAATCCACTT  1147

seq1  AAAAAAGAATTCA-GCAAGAAAACACACACTAACAACATTGTTTACTTAG  1194
      |||| |    ||| || || |||||||||||||| |||| |||||||  |
seq2  AAAAGA----TCAGGCTAG-AAACACACACTAACCACATGGTTTACTAGG  1192

seq1  GTCTCCTG  1202
       |||||||
seq2  CTCTCCTG  1200


seq1: chr12_41753867_41755036
seq2: B6Ng01-218F24.g_63_1228 (reverse)

seq1  GTCAGCTTGAAAAACAAGAGAAAGGGTTTCTATCTGACACCATTCACAAA  50
      |||||||||  |||  || |||| || ||||||| || ||||| |  |||
seq2  GTCAGCTTG--AAATCAGTGAAATGG-TTCTATCGGA-ACCATGCCAAAA  46

seq1  GTGAGACAGAC-AGGCTACCACATTTAGCTGAGTGCTCAAAGTTAGGATT  99
      ||||| ||| | |||||  |||| |||||||||||||| |||||| ||||
seq2  GTGAG-CAGGCAAGGCTTACACA-TTAGCTGAGTGCTC-AAGTTAAGATT  93

seq1  TCTTTTTTAGAAACATCTTTGGTTTA-TAAGCATTATAATAAAAA-TGCT  147
       |||||  | || ||||||||||||| ||||   ||||||||||| ||||
seq2  CCTTTTAGAAAACCATCTTTGGTTTATTAAGGCATATAATAAAAATTGCT  143

seq1  GCTGCTTCATGT-CCAAACTGTCAGGATTTTGCTAGGTTGTGGGTCTGAT  196
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  GCTGCTTCATGTCCCAAACTGTCAGGA-TTTGCTAGGTTGTGGGTCTGAT  192

seq1  ATATAGCTAAGCTGTGTATTTAGCGTATCTAATACTTCATTTGGAGCTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTAAGCTGTGTATTTAGCGTATCTAATACTTCATTTGGAGCTGA  242

seq1  GAAAGACACGTCTACAGACACTCCACTTCACAGCAGACATCTGGTTCGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACACGTCTACAGACACTCCACTTCACAGCAGACATCTGGTTCGCT  292

seq1  TTGCTAAGGAGTACACTTTGTCAGTAGATTACTACGGGCACATCAGCTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGGAGTACACTTTGTCAGTAGATTACTACGGGCACATCAGCTGT  342

seq1  ACTGCGGCAGTGTGTGCCATTTCTATCATGAGCTCTGGTCTACTGGGCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGGCAGTGTGTGCCATTTCTATCATGAGCTCTGGTCTACTGGGCAC  392

seq1  AAGAGTGATGTTTTATTCAAATGTCAGCACCTGGTCATAGAAGCACATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGATGTTTTATTCAAATGTCAGCACCTGGTCATAGAAGCACATTT  442

seq1  CCCACAGGTGTCTTCTAGAGTCATTGTTCTTACGAGTTAACAAGGGGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGTGTCTTCTAGAGTCATTGTTCTTACGAGTTAACAAGGGGAAA  492

seq1  GACTTCCTGTTCTTGGTGAGTTTTTACACTAAGTTTTTGTAGAAGAAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTGTTCTTGGTGAGTTTTTACACTAAGTTTTTGTAGAAGAAAAA  542

seq1  TATTTTTAAAGAAAGCAAAACCTCACTTTAGAACCTATTGAGCTGAGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAAGAAAGCAAAACCTCACTTTAGAACCTATTGAGCTGAGTGT  592

seq1  CTTGGTTCACACCTGGACAAATGAGGCAGAGGCAGGCAGATTTTGAGTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCACACCTGGACAAATGAGGCAGAGGCAGGCAGATTTTGAGTTC  642

seq1  TAGGTTAGCCTGACCTAAAGCAGACATTTTTTTTTTTTTAATTTAAAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGCCTGACCTAAAGCAGACATTTTTTTTTTTTTAATTTAAAAAA  692

seq1  GGAACTTGCTATGTTTTAAAAGGTTCATTTTCTTCTCCCTGCCCCCTGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGCTATGTTTTAAAAGGTTCATTTTCTTCTCCCTGCCCCCTGCC  742

seq1  TCCTCTGTCCTTTCCTTCTTTCTTTCTTTTAGACAAGTTTTTCTGTATAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTCCTTTCCTTCTTTCTTTCTTTTAGACAAGTTTTTCTGTATAG  792

seq1  CCCTGTCTTCGAACTTGTCCTGGTCTATATACTAGGCTGGCCTCAAACTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTTCGAACTTGTCCTGGTCTATATACTAGGCTGGCCTCAAACTC  842

seq1  AGAAATTCTGCCTCCAAGTTAAAAAGTCCACTTTCAAGTCTACTTTCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTGCCTCCAAGTTAAAAAGTCCACTTTCAAGTCTACTTTCTTA  892

seq1  CACATTAGCAACTTAATTTACAGAAAAAGAATAACAAGTAGCATTTGGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGCAACTTAATTTACAGAAAAAGAATAACAAGTAGCATTTGGGT  942

seq1  TTCCAGATTAAAGTACCAAAGCCTTTCAAACTCATCATATGCTATTAGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTAAAGTACCAAAGCCTTTCAAACTCATCATATGCTATTAGAG  992

seq1  ATGATGTGTACGCTTAGAGATTCTTAAATTTTTCCATTTACTCCCTTTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTGTACGCTTAGAGATTCTTAAATTTTTCCATTTACTCCCTTTTG  1042

seq1  TCTAACACATTTTAAAAAACCCCTTGGCATATAGGGTATGTAAAGTAGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACATTTTAAAAAACCCCTTGGCATATAGGGTATGTAAAGTAGGT  1092

seq1  ATGTAAATCAAACATGTACTTATAATAAATCATAAAGCAATTCATTTAAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATCAAACATGTACTTATAATAAATCATAAAGCAATTCATTTAAG  1142

seq1  AATAGTTGTTTGGTATATGAATTC  1170
      ||||||||||||||||||||||||
seq2  AATAGTTGTTTGGTATATGAATTC  1166


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