BAC Information

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BAC

Clone NameB6Ng01-219D18
Chromosome12 (Build37)
Map Location 74,416,655 - 74,550,427
singlet/doubletdoublet
Overlap geneSlc38a6, EG666356
Upstream geneRtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5
Downstream geneTmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219D18.bB6Ng01-219D18.g
ACCGA035135GA035136
length1,0201,193
definitionB6Ng01-219D18.b B6Ng01-219D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,549,418 - 74,550,427)(74,416,655 - 74,417,833)
sequence
gaattcctcagccatgtgtcagggaccctgtgctgagagcctgggcctca
gtcaagacagaaggtttcaaaacccaacaccctgagacctctctccacct
tctcctcccggccccgcccacatttttcctgcttggtggtttctgtgctt
ggccaacttgagtgaaggttccgcttcctttccatcagtgtgcgatggac
tccaacagccctgcaggccacgccccactgctgcagctcccactccagca
gctgtagctgccactgctcatagaggatggggagacaggagccaaagccg
ggtttcaccatgggctcctagccaaggtgcctcagattttccgccgcacc
tggaaacaggacccgaaaagcacaggttagagaggagacacggctgctcg
gctgctcggttcaatagcctcattcatgaaattaaaccaaaacaaaccct
gtagcgtttagaacactctgtttagtttgttctttctcttctcctcggat
atttgtagaacaggtcccagggcatgaatgtggaaagaaatgaggaagaa
ctaggaaaaagagggagggagagtggaagggatggaaggagacctcgggc
tcagccaagcacaaagacacccatggaagagaattaatcccgccctcctc
tcaaatgtgacaggcaacgacaggttgagaaattgctaccccaggtcatg
ggaaggtcattgacgagtttttcaggtttccagtaaagtaggaaaatgac
cggtgcagctaaacttcccgcaaccctgactgagagaaagctaacctggt
actgatgggccctcaacagatcccaggggagtggatgaaagactttaggc
agggattctctgcagctggggacgctcgctgaatagagatgccacttgaa
acacaattgggaagcatggtttaggacatccctgttgtcagctgggagtt
ctgaaacaaagtgttatgaccagagaaaggactcacttctacccagggga
gtctgcaatccggatggtaa
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaagcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacaggatgt
cagcgccatcttgtaacggcgaatgtgggggcggctcccaacaaagagcc
acttaacctatgagttgcctcccacacttgttctcccgtttgtaatctaa
atggagtccatcttgtaaatggctaaactagtttctaagaagtaagtctc
agagggagtcacttctccccaatgggaaggaagtccagttctcattactc
ctggggtgtagagggagcacatgagccttaggtaacaccagggctttcat
cttcataatctaaatagacagcgcgctactcgagggcaaaggctttagtc
aggcgtccccaagaacattttcttcctagagagcagaatgtttaccctat
ctctggttcacttcctaagaaaagaatgaagaagaagaaaatgtgcataa
gacaatgccccaggtcaggacccgagttcagatccccagcacccatggaa
aacctggacgtagccaaatattcctgtaacccccgtgctaagggagagtg
cagaaacgggttctcaccaacagctagctctaagtccagtcagagactgt
cccctgaaaccaggtaatcacctgcaggatactgcatatcccgcacagca
tatgtacttcatcaccaagcacatgggtgcatgcgtatgcatacagcagg
gcacacaacagctgaagccataacagcaacaacaaagacacaccctggtt
gagttaatgacctgtaggtgtgtgtccttgtgtctccggtggcactctgc
cattagctcacagtagtagttccctcatccctgcatctcatcaagtgcag
cctgagagtgtaagcccgtggaggttttttcactgttttacaataggtgt
ccatttcttagtagcagctgcacctggggcagagttgttacccagaagtg
aagacctgtttagattctgcttgttacttttgttccctattcattatgat
ccggaattcccaatttctcctctgggcctatgatgtgtgggtttggcata
gatacctttccgatcaaagaaattcgttttcggaaatttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_74549418_74550427
seq2: B6Ng01-219D18.b_47_1066 (reverse)

seq1  TTACCATCCGGATTGCAGACT-CCCTGGGTAGAAGTGAGTCCTTTCTCTG  49
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTACCATCCGGATTGCAGACTCCCCTGGGTAGAAGTGAGTCCTTTCTCTG  50

seq1  GTCCT-ACACTTTGTTTCAGAACT-CCAGCTGACAACAGGGATGTCCCTA  97
      ||| | |||||||||||||||||| ||||||||||||||||||||||  |
seq2  GTCATAACACTTTGTTTCAGAACTCCCAGCTGACAACAGGGATGTCCTAA  100

seq1  ACCATGCT--CCAATTGTGTTTC-AGTGGCATCTCTATTCAGCGAGCGT-  143
      ||||||||  ||||||||||||| ||||||||||||||||||||||||| 
seq2  ACCATGCTTCCCAATTGTGTTTCAAGTGGCATCTCTATTCAGCGAGCGTC  150

seq1  CCCAGCTGCAGAGAATCCCTGCCT-AAGTCTTTCATCCACTCCCCTGGGA  192
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCAGCTGCAGAGAATCCCTGCCTAAAGTCTTTCATCCACTCCCCTGGGA  200

seq1  TCTGTTGAGGGCCCATCAGTACCAGGTTAGC-TTCTCTCAGTCAGGGTTG  241
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTGTTGAGGGCCCATCAGTACCAGGTTAGCTTTCTCTCAGTCAGGGTTG  250

seq1  CGGGAAGTTTAGCTGCCCCGGTCATTTTCCTAC-TTACTGGAAACCTGAA  290
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  CGGGAAGTTTAGCTGCACCGGTCATTTTCCTACTTTACTGGAAACCTGAA  300

seq1  AAACTCGTCAATGACCTTCCCATGACCTGGGGTAGCAATTTCTCAACCTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGTCAATGACCTTCCCATGACCTGGGGTAGCAATTTCTCAACCTG  350

seq1  TCGTTGCCTGTCACATTTGAGAGGAGGGCGGGATTAATTCTCTTCCATGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGCCTGTCACATTTGAGAGGAGGGCGGGATTAATTCTCTTCCATGG  400

seq1  GTGTCTTTGTGCTTGGCTGAGCCCGAGGTCTCCTTCCATCCCTTCCACTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTGTGCTTGGCTGAGCCCGAGGTCTCCTTCCATCCCTTCCACTC  450

seq1  TCCCTCCCTCTTTTTCCTAGTTCTTCCTCATTTCTTTCCACATTCATGCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCTTTTTCCTAGTTCTTCCTCATTTCTTTCCACATTCATGCC  500

seq1  CTGGGACCTGTTCTACAAATATCCGAGGAGAAGAGAAAGAACAAACTAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCTGTTCTACAAATATCCGAGGAGAAGAGAAAGAACAAACTAAA  550

seq1  CAGAGTGTTCTAAACGCTACAGGGTTTGTTTTGGTTTAATTTCATGAATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTTCTAAACGCTACAGGGTTTGTTTTGGTTTAATTTCATGAATG  600

seq1  AGGCTATTGAACCGAGCAGCCGAGCAGCCGTGTCTCCTCTCTAACCTGTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTGAACCGAGCAGCCGAGCAGCCGTGTCTCCTCTCTAACCTGTG  650

seq1  CTTTTCGGGTCCTGTTTCCAGGTGCGGCGGAAAATCTGAGGCACCTTGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCGGGTCCTGTTTCCAGGTGCGGCGGAAAATCTGAGGCACCTTGGC  700

seq1  TAGGAGCCCATGGTGAAACCCGGCTTTGGCTCCTGTCTCCCCATCCTCTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCCCATGGTGAAACCCGGCTTTGGCTCCTGTCTCCCCATCCTCTA  750

seq1  TGAGCAGTGGCAGCTACAGCTGCTGGAGTGGGAGCTGCAGCAGTGGGGCG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTGGCAGCTACAGCTGCTGGAGTGGGAGCTGCAGCAGTGGGGCG  800

seq1  TGGCCTGCAGGGCTGTTGGAGTCCATCGCACACTGATGGAAAGGAAGCGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCAGGGCTGTTGGAGTCCATCGCACACTGATGGAAAGGAAGCGG  850

seq1  AACCTTCACTCAAGTTGGCCAAGCACAGAAACCACCAAGCAGGAAAAATG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCACTCAAGTTGGCCAAGCACAGAAACCACCAAGCAGGAAAAATG  900

seq1  TGGGCGGGGCCGGGAGGAGAAGGTGGAGAGAGGTCTCAGGGTGTTGGGTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGGGGCCGGGAGGAGAAGGTGGAGAGAGGTCTCAGGGTGTTGGGTT  950

seq1  TTGAAACCTTCTGTCTTGACTGAGGCCCAGGCTCTCAGCACAGGGTCCCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACCTTCTGTCTTGACTGAGGCCCAGGCTCTCAGCACAGGGTCCCT  1000

seq1  GACACATGGCTGAGGAATTC  1010
      ||||||||||||||||||||
seq2  GACACATGGCTGAGGAATTC  1020

seq1: chr12_74416655_74417833
seq2: B6Ng01-219D18.g_67_1259

seq1  GAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCAT  50

seq1  CGGCCGAGTTGACGTCACGGGGAAAGCAGAGCACAAGTAGTCATAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTTGACGTCACGGGGAAAGCAGAGCACAAGTAGTCATAAGATA  100

seq1  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGT  150

seq1  CAGCGCCATCTTGTAACGGCGAATGTGGGGGCGGCTCCCAACAAAGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCATCTTGTAACGGCGAATGTGGGGGCGGCTCCCAACAAAGAGCC  200

seq1  ACTTAACCTATGAGTTGCCTCCCACACTTGTTCTCCCGTTTGTAATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACCTATGAGTTGCCTCCCACACTTGTTCTCCCGTTTGTAATCTAA  250

seq1  ATGGAGTCCATCTTGTAAATGGCTAAACTAGTTTCTAAGAAGTAAGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTCCATCTTGTAAATGGCTAAACTAGTTTCTAAGAAGTAAGTCTC  300

seq1  AGAGGGAGTCACTTCTCCCCAATGGGAAGGAAGTCCAGTTCTCATTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGTCACTTCTCCCCAATGGGAAGGAAGTCCAGTTCTCATTACTC  350

seq1  CTGGGGTGTAGAGGGAGCACATGAGCCTTAGGTAACACCAGGGCTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGTAGAGGGAGCACATGAGCCTTAGGTAACACCAGGGCTTTCAT  400

seq1  CTTCATAATCTAAATAGACAGCGCGCTACTCGAGGGCAAAGGCTTTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAATCTAAATAGACAGCGCGCTACTCGAGGGCAAAGGCTTTAGTC  450

seq1  AGGCGTCCCCAAGAACATTTTCTTCCTAGAGAGCAGAATGTTTACCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTCCCCAAGAACATTTTCTTCCTAGAGAGCAGAATGTTTACCCTAT  500

seq1  CTCTGGTTCACTTCCTAAGAAAAGAATGAAGAAGAAGAAAATGTGCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTCACTTCCTAAGAAAAGAATGAAGAAGAAGAAAATGTGCATAA  550

seq1  GACAATGCCCCAGGTCAGGACCCGAGTTCAGATCCCCAGCACCCATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGCCCCAGGTCAGGACCCGAGTTCAGATCCCCAGCACCCATGGAA  600

seq1  AACCTGGACGTAGCCAAATATTCCTGTAACCCCCGTGCTAAGGGAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGACGTAGCCAAATATTCCTGTAACCCCCGTGCTAAGGGAGAGTG  650

seq1  CAGAAACGGGTTCTCACCAACAGCTAGCTCTAAGTCCAGTCAGAGACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACGGGTTCTCACCAACAGCTAGCTCTAAGTCCAGTCAGAGACTGT  700

seq1  CCCCTGAAACCAGGTAATCACCTGCAGGATACTGCATATCCCGCACAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAAACCAGGTAATCACCTGCAGGATACTGCATATCCCGCACAGCA  750

seq1  TATGTACTTCATCACCAAGCACATGGGTGCATGCGTATGCATACAGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTTCATCACCAAGCACATGGGTGCATGCGTATGCATACAGCAGG  800

seq1  GCACACAACAGCTGAAGCCATAACAGCAACAACAAAGACACACCCTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAACAGCTGAAGCCATAACAGCAACAACAAAGACACACCCTGGTT  850

seq1  GAGTTAATGACCTGTAGGTGTGTGTCCTTGTGTCTCCGGTGGCACTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATGACCTGTAGGTGTGTGTCCTTGTGTCTCCGGTGGCACTCTGC  900

seq1  CATTAGCTCACAGTAGTAGTTCCCTCATCCCTGCATCTCATC-AGTGCAG  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATTAGCTCACAGTAGTAGTTCCCTCATCCCTGCATCTCATCAAGTGCAG  950

seq1  CCTGAGAGTGTAAG-CCGTGGAG--TCTGTCACTG-TTTAC-ATAGGTGT  994
      |||||||||||||| ||||||||  | | |||||| ||||| ||||||||
seq2  CCTGAGAGTGTAAGCCCGTGGAGGTTTTTTCACTGTTTTACAATAGGTGT  1000

seq1  CCA-TTCTAAGTAAGCAGCTGCAC--TGGGCAGAGT--GTACCCAG-AGT  1038
      ||| |||| ||| |||||||||||   |||||||||   ||||||| |||
seq2  CCATTTCTTAGT-AGCAGCTGCACCTGGGGCAGAGTTGTTACCCAGAAGT  1049

seq1  GAGGACTTG-TTAGATTCTGCTTG-TACTTT--GTCCCTATTCTATTATT  1084
      || ||| || |||||||||||||| ||||||   ||||||||| |||| |
seq2  GAAGACCTGTTTAGATTCTGCTTGTTACTTTTGTTCCCTATTC-ATTA-T  1097

seq1  GATCCGAAATTCCCATTTTCTTCCCTCTGG--CTATGATGTGTGG--TTG  1130
      |||||| |||||||| |||||  |||||||  |||||||||||||  |||
seq2  GATCCGGAATTCCCAATTTCT--CCTCTGGGCCTATGATGTGTGGGTTTG  1145

seq1  G-ATA-ATATCATTTTCAGAATCAAAGAAA-TCGTTTTTGAAAAATTTAA  1177
      | ||| ||| |  |||| | |||||||||| ||||||| |  ||||||||
seq2  GCATAGATACC--TTTCCG-ATCAAAGAAATTCGTTTTCG-GAAATTTAA  1191

seq1  GG  1179
      ||
seq2  GG  1193