BAC Information

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BAC

Clone NameB6Ng01-220H01
Chromosome12 (Build37)
Map Location 84,951,948 - 85,145,426
singlet/doubletdoublet
Overlap geneLOC626950, Rbm25, Psen1, Papln, Numb
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1
Downstream geneLOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220H01.bB6Ng01-220H01.g
ACCGA035996GA035997
length856856
definitionB6Ng01-220H01.b B6Ng01-220H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,951,948 - 84,952,792)(85,144,579 - 85,145,426)
sequence
gaattcaaggccaccttcaactacatagtaagttcaaggccaatataagc
aggaatgcatagccagaatagaagagagaaggactaagtggtattcagca
taggagtttgagcattgttcaaaaatcgctccttctgggccagcaaaatg
gctcagcaaggaaaagggatggccaccaggcctgacaaccttatttatac
ccgtggcccacctgaagaaaggagaaagccaccttccacaaatcattctc
ttacctccagactcatactgtgaaatgtgctaccacatatacaaagtaaa
ttaagatgtaacaaaatattttaattgctccaatgactaaaataactcta
tcaactgaatctgtaaacctttgaaagtttagagcagttagggagagtaa
aacaggtgctttgcttttctttatttatttttttggtttttttttttttt
ttttttttttggttttttgagacagggtttctctatatagccctggctgt
cctggaactcactctgtagaccaggctggcctcgaactcagaaatcagcc
tgcctctgcctcccaagtgctgggattaaaggcgtgcgccacatataccc
ggctaaacaggtgcttttctattaagttttgtttgtttgtttgttttggt
tttttgtttgtttgtttggcttttggcttttgttttttgagacagggctt
tctgtatagcccttgctgtcttggaacttgctcctgcaggcctggctggg
tttcaaaattcacagagaatcccagcagcctctgccttcccagtgctggg
attaactaaaaggtggtgacccacctaccacggggttaattttcctcttt
ctctgg
gaattccaagtgtcacaaaattacagaaactgtctgcagctggcaaaatc
accctcctgctcgagcatgaggcaaatcatagtcatctgctatggacaat
ttgaggcaggcccagatcccacacctgggataaaagaaaagcacattcct
gtttcttgtgtttttaaaaaagaaaacaacattctcacttcagtcaagca
tctcacaacctcctgaaacttcagctccagggtgatccaacacctctggc
ctttgaggtgttcactcaaagttatctgtattcacgtgcacaagaaaaca
agcgcgcacgcgcgtgtacacacacacacacacacagagaattaaaaatt
aaagggaaattggagacttagatataaagacagtttgtctggcatgttaa
ctttaaactgtaatttacagcagctgtgtttgtatgtagttatttgtgct
gtaactctctctcatagagctttcaaaacctgctctctacagggggaaag
actgagccacgccgtgggctgtgcttttgcagcctgtttagagcgtaaac
agaagcgggagaaggagtgtggcgtcactgctacttttgatgccagtaga
accactttcacaagagaaggatcattccgtgtcacaactgccactgagca
agccgaaagagaggagatcatgaaaacagttgcaagatgccaagaaaggt
acagtgtgtttctactgtaatgtgtttatttaattcaggttttctcaaca
ggtttatagaacatggtgtcttacagactgaaggaacccttgggattgca
ggtgaagctcaattgacagagcttttcccacatgttcaaggtccttggct
tctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_84951948_84952792
seq2: B6Ng01-220H01.b_43_898

seq1  GAATTCAAGGCCACCTTCAACTACATAGTAAGTTCAAGGCCAATATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCACCTTCAACTACATAGTAAGTTCAAGGCCAATATAAGC  50

seq1  AGGAATGCATAGCCAGAATAGAAGAGAGAAGGACTAAGTGGTATTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCATAGCCAGAATAGAAGAGAGAAGGACTAAGTGGTATTCAGCA  100

seq1  TAGGAGTTTGAGCATTGTTCAAAAATCGCTCCTTCTGGGCCAGCAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTTGAGCATTGTTCAAAAATCGCTCCTTCTGGGCCAGCAAAATG  150

seq1  GCTCAGCAAGGAAAAGGGATGGCCACCAGGCCTGACAACCTTATTTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAAGGAAAAGGGATGGCCACCAGGCCTGACAACCTTATTTATAC  200

seq1  CCGTGGCCCACCTGAAGAAAGGAGAAAGCCACCTTCCACAAATCATTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGCCCACCTGAAGAAAGGAGAAAGCCACCTTCCACAAATCATTCTC  250

seq1  TTACCTCCAGACTCATACTGTGAAATGTGCTACCACATATACAAAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCCAGACTCATACTGTGAAATGTGCTACCACATATACAAAGTAAA  300

seq1  TTAAGATGTAACAAAATATTTTAATTGCTCCAATGACTAAAATAACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGTAACAAAATATTTTAATTGCTCCAATGACTAAAATAACTCTA  350

seq1  TCAACTGAATCTGTAAACCTTTGAAAGTTTAGAGCAGTTAGGGAGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGAATCTGTAAACCTTTGAAAGTTTAGAGCAGTTAGGGAGAGTAA  400

seq1  AACAGGTGCTTTGCTTTTCTTTATTTATTTTTTTGGTTTTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGCTTTGCTTTTCTTTATTTATTTTTTTGGTTTTTTTTTTTTTT  450

seq1  TTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTATATAGCCCTGGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTATATAGCCCTGGCTGT  500

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCC  550

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACATATACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACATATACCC  600

seq1  GGCTAAACAGGTGCTTTTCTATTAAGTTTTGTTTGTTTGTTTGTTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACAGGTGCTTTTCTATTAAGTTTTGTTTGTTTGTTTGTTTTGGT  650

seq1  TTTTTGTTTGTTTGTTTGGCTTTTGGCTTTTGTTTTTTGAGACA-GGCTT  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTTGTTTGTTTGTTTGGCTTTTGGCTTTTGTTTTTTGAGACAGGGCTT  700

seq1  TCTGTATAGCCCTTGCTGTCTTGGAACTTGCT-CTGCAGGCCTGGCTGGC  748
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TCTGTATAGCCCTTGCTGTCTTGGAACTTGCTCCTGCAGGCCTGGCTGGG  750

seq1  TT--CAAATTCACAGAGA--TCCAGCAGCCTCTGCCTCCCAAGTGCTGGG  794
      ||   |||||||||||||   |||||||||||||||| || |||||||||
seq2  TTTCAAAATTCACAGAGAATCCCAGCAGCCTCTGCCTTCCCAGTGCTGGG  800

seq1  ATTAACT-AAAGGT-GTGCACCACC-ACCACTGGTTTA--TTTTCTCTTT  839
      ||||||| |||||| |||  ||||| ||||| || |||  ||| ||||||
seq2  ATTAACTAAAAGGTGGTGACCCACCTACCACGGGGTTAATTTTCCTCTTT  850

seq1  CTCTGG  845
      ||||||
seq2  CTCTGG  856

seq1: chr12_85144579_85145426
seq2: B6Ng01-220H01.g_69_924 (reverse)

seq1  AATAGAAGCC-AGGACCTTGAACATGTGGG-AATGCTCTGTC-ACTGAGC  47
      |||||||||| ||||||||||||||||||| || |||||||| | |||||
seq2  AATAGAAGCCAAGGACCTTGAACATGTGGGAAAAGCTCTGTCAATTGAGC  50

seq1  TTCACCTGCAAT-CCAAGGGTTCCTTCAGTCTGTAAGACA-CATG-TCTA  94
      |||||||||||| ||||||||||||||||||||||||||| |||| ||||
seq2  TTCACCTGCAATCCCAAGGGTTCCTTCAGTCTGTAAGACACCATGTTCTA  100

seq1  TAAACCTGTTGAGAAAACCTGAATTAAATAAACACATTACAGTAG-AACA  143
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAACCTGTTGAGAAAACCTGAATTAAATAAACACATTACAGTAGAAACA  150

seq1  CACTGTACCTTTCTTGGCATCTTGCAACTG-TTTCATGATCTCCTCTCTT  192
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTGTACCTTTCTTGGCATCTTGCAACTGTTTTCATGATCTCCTCTCTT  200

seq1  TCGGCTTGCTCAGTGGCAGTTGTGACACGGAATGATCCTTCTCTTGTGAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTTGCTCAGTGGCAGTTGTGACACGGAATGATCCTTCTCTTGTGAA  250

seq1  AGTGGTTCTACTGGCATCAAAAGTAGCAGTGACGCCACACTCCTTCTCCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCTACTGGCATCAAAAGTAGCAGTGACGCCACACTCCTTCTCCC  300

seq1  GCTTCTGTTTACGCTCTAAACAGGCTGCAAAAGCACAGCCCACGGCGTGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTACGCTCTAAACAGGCTGCAAAAGCACAGCCCACGGCGTGG  350

seq1  CTCAGTCTTTCCCCCTGTAGAGAGCAGGTTTTGAAAGCTCTATGAGAGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTTTCCCCCTGTAGAGAGCAGGTTTTGAAAGCTCTATGAGAGAG  400

seq1  AGTTACAGCACAAATAACTACATACAAACACAGCTGCTGTAAATTACAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGCACAAATAACTACATACAAACACAGCTGCTGTAAATTACAGT  450

seq1  TTAAAGTTAACATGCCAGACAAACTGTCTTTATATCTAAGTCTCCAATTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTAACATGCCAGACAAACTGTCTTTATATCTAAGTCTCCAATTT  500

seq1  CCCTTTAATTTTTAATTCTCTGTGTGTGTGTGTGTGTGTACACGCGCGTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAATTTTTAATTCTCTGTGTGTGTGTGTGTGTGTACACGCGCGTG  550

seq1  CGCGCTTGTTTTCTTGTGCACGTGAATACAGATAACTTTGAGTGAACACC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTTGTTTTCTTGTGCACGTGAATACAGATAACTTTGAGTGAACACC  600

seq1  TCAAAGGCCAGAGGTGTTGGATCACCCTGGAGCTGAAGTTTCAGGAGGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCCAGAGGTGTTGGATCACCCTGGAGCTGAAGTTTCAGGAGGTT  650

seq1  GTGAGATGCTTGACTGAAGTGAGAATGTTGTTTTCTTTTTTAAAAACACA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGCTTGACTGAAGTGAGAATGTTGTTTTCTTTTTTAAAAACACA  700

seq1  AGAAACAGGAATGTGCTTTTCTTTTATCCCAGGTGTGGGATCTGGGCCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGAATGTGCTTTTCTTTTATCCCAGGTGTGGGATCTGGGCCTG  750

seq1  CCTCAAATTGTCCATAGCAGATGACTATGATTTGCCTCATGCTCGAGCAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATTGTCCATAGCAGATGACTATGATTTGCCTCATGCTCGAGCAG  800

seq1  GAGGGTGATTTTGCCAGCTGCAGACAGTTTCTGTAATTTTGTGACACTTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGATTTTGCCAGCTGCAGACAGTTTCTGTAATTTTGTGACACTTG  850

seq1  GAATTC  848
      ||||||
seq2  GAATTC  856