BAC Information

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BAC

Clone NameB6Ng01-220L15
Chromosome12 (Build37)
Map Location 39,613,178 - 39,763,117
singlet/doubletdoublet
Overlap geneLOC100043145
Upstream geneDgkb, LOC668824, LOC100043142, Etv1
Downstream geneLOC100043148, Arl4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220L15.bB6Ng01-220L15.g
ACCGA036213GA036214
length1,129578
definitionB6Ng01-220L15.b B6Ng01-220L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,613,178 - 39,614,312)(39,762,543 - 39,763,117)
sequence
gaattcagtcataaagatgactgtagggcagttctctgggtaggattgga
ctgactgtgaactctgtctttttaatttatggttccaaagacttgttgca
gaatggcctgggaatgtatcatctagtgataggaatgggctatctgaagt
gactggggcttttttatagtctcccataccagaagcaggcctttaaagtg
ctaagctaggaaatcccatgtccctgaattgtaaggactcaacataggct
gctttctgggtctcctagcctgtgtagatgagactccatccttctaaggc
acttttggagaataggaatatgatgaatccctggctctttttctcttgct
gcccatcttaaaaaaaatttgtgtagcccgtggaaccaggcatttggagt
cactgtgctagaagagccagaaaacactacacagtgaattgatttcagtt
caaagtggtgtttggaactagaaaggtagagtgtgattaaagaggggcat
caagtctatggttcttaaaactgaccaccaaatgaaaacatcacagatat
ccacgttgtttattcctaaaattacatgggagccctgtgaataagatatg
ggaatatggacaatataaaattaacatcctagtaatctttctctctttct
ttttagctattttcatttttaaaaatgcatttatttatcctctttacatc
ccaacatcagtgttcctctcctcccagtaccacctcctcctccatacctc
cctcctcctttgagaagagtgagtcccctctaggtatcaccctgccacta
tgcacacccctacccacacacagacatcaagtcactgcaggacaggtgca
tcctctcccactgaggtcagacaaggcagcccagttaggagaatgggatt
caaggcaggcaacagatttggggacagcctcctgctccagttattaggaa
accagcatgaagaccaacctgcacatctgctacatattgtgcaggggtct
agcctgtgcttaatctttagtggtggttcagtctttgtgagcccccaaaa
ttcaagtagatgactctgttggtcttcctgtgagtcctgtcttctgtgtt
cctcattcctccaagccactcttcacaag

gaattcagatcaaagatttcttcattgaaagtggaaaggggtttctggag
tgatttccattttctgaatcttgtccaaggtctatctaagtaattaaaaa
aaattcaatatatgtttccatttttaaagtgttttcacactttaagggaa
aaatgacccttgaccctgatctctaaggacagataaggcttatcatttga
cttgtagaaactgtttaatgaattatgttttgttcctacgtatatatctg
ccattcgcccttagcgttgcatcgcgaatctcttcaactcacatgttcgt
caaagtatggcccctcattaactactgaaacacctccaacagggagcttt
caaattaggaaagttaggaaaaagctttgccagcagtatctttcctatat
atgagtttttaaatagcatttatttatattgtttttaatttatttattgt
gtttgtggtgttggggtttgagtctcttgagtttgagcctcagccccatt
tttttaatttaaaattcttttgttttgagactgaatcttcacaaagtttt
taaagcctggccttacactccctctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39613178_39614312
seq2: B6Ng01-220L15.b_48_1176

seq1  GAATTCAGTCATAAAGATGACTGTAGGGCAGTTCTCTGGGTAGGATTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCATAAAGATGACTGTAGGGCAGTTCTCTGGGTAGGATTGGA  50

seq1  CTGACTGTGAACTCTGTCTTTTTAATTTATGGTTCCAAAGACTTGTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTGAACTCTGTCTTTTTAATTTATGGTTCCAAAGACTTGTTGCA  100

seq1  GAATGGCCTGGGAATGTATCATCTAGTGATAGGAATGGGCTATCTGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCCTGGGAATGTATCATCTAGTGATAGGAATGGGCTATCTGAAGT  150

seq1  GACTGGGGCTTTTTTATAGTCTCCCATACCAGAAGCAGGCCTTTAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGGCTTTTTTATAGTCTCCCATACCAGAAGCAGGCCTTTAAAGTG  200

seq1  CTAAGCTAGGAAATCCCATGTCCCTGAATTGTAAGGACTCAACATAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTAGGAAATCCCATGTCCCTGAATTGTAAGGACTCAACATAGGCT  250

seq1  GCTTTCTGGGTCTCCTAGCCTGTGTAGATGAGACTCCATCCTTCTAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGGGTCTCCTAGCCTGTGTAGATGAGACTCCATCCTTCTAAGGC  300

seq1  ACTTTTGGAGAATAGGAATATGATGAATCCCTGGCTCTTTTTCTCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGAGAATAGGAATATGATGAATCCCTGGCTCTTTTTCTCTTGCT  350

seq1  GCCCATCTTAAAAAAAATTTGTGTAGCCCGTGGAACCAGGCATTTGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCTTAAAAAAAATTTGTGTAGCCCGTGGAACCAGGCATTTGGAGT  400

seq1  CACTGTGCTAGAAGAGCCAGAAAACACTACACAGTGAATTGATTTCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCTAGAAGAGCCAGAAAACACTACACAGTGAATTGATTTCAGTT  450

seq1  CAAAGTGGTGTTTGGAACTAGAAAGGTAGAGTGTGATTAAAGAGGGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGTGTTTGGAACTAGAAAGGTAGAGTGTGATTAAAGAGGGGCAT  500

seq1  CAAGTCTATGGTTCTTAAAACTGACCACCAAATGAAAACATCACAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTATGGTTCTTAAAACTGACCACCAAATGAAAACATCACAGATAT  550

seq1  CCACGTTGTTTATTCCTAAAATTACATGGGAGCCCTGTGAATAAGATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTGTTTATTCCTAAAATTACATGGGAGCCCTGTGAATAAGATATG  600

seq1  GGAATATGGACAATATAAAATTAACATCCTAGTAATCTTTCTCTCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGGACAATATAAAATTAACATCCTAGTAATCTTTCTCTCTTTCT  650

seq1  TTTTAGCTATTTTCATTTTTAAAAATGCATTTATTTATCCTCTTTACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTATTTTCATTTTTAAAAATGCATTTATTTATCCTCTTTACATC  700

seq1  CCAACATCAGTGTTCCTCTCCTCCCAGTACCACCTCCTCCTCCATACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCAGTGTTCCTCTCCTCCCAGTACCACCTCCTCCTCCATACCTC  750

seq1  CCTCCTCCTTTGAGAAGAGTGAGTCCCCTCTAGGTATCACCCTGCCACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTTTGAGAAGAGTGAGTCCCCTCTAGGTATCACCCTGCCACTA  800

seq1  TGCACACCCCTACCCACACACAGACATCAAGTCACTGCAGGACAGGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCCCTACCCACACACAGACATCAAGTCACTGCAGGACAGGTGCA  850

seq1  TCCTCTCCCACTGAGGTCAGACAAGGCAGCCCAGTTAGGAGAATGGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCCACTGAGGTCAGACAAGGCAGCCCAGTTAGGAGAATGGGATT  900

seq1  CAAGGCAGGCAACAGATTTGGGGACAGCCTCCTGCTCCAGTTATTAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGCAACAGATTTGGGGACAGCCTCCTGCTCCAGTTATTAGGAA  950

seq1  ACCAGCATGAAGACCAACCTGCACATCTGCTACATA-TGTGCAGGGGGTC  999
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  ACCAGCATGAAGACCAACCTGCACATCTGCTACATATTGTGCA-GGGGTC  999

seq1  TAGCCTGTGCTTAATCTTTAGTTGGTGGTTCAGTCTTTGTGAGCCCCCAA  1049
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGCCTGTGCTTAATCTTTAG-TGGTGGTTCAGTCTTTGTGAGCCCCCAA  1048

seq1  AATCCAGGTTAGATGACTCTGTTGGTCTTCCTGTGGAGTCCCTGTCTTCT  1099
      ||| || | ||||||||||||||||||||||||| |||| ||||||||| 
seq2  AATTCAAG-TAGATGACTCTGTTGGTCTTCCTGT-GAGT-CCTGTCTTC-  1094

seq1  TGTGTTCCTCAATCCTCCCAGCAACTCTTCCACAAG  1135
      ||||||||||| |||||| ||| |||||| ||||||
seq2  TGTGTTCCTCATTCCTCCAAGCCACTCTT-CACAAG  1129


seq1: chr12_39762543_39763117
seq2: B6Ng01-220L15.g_69_646 (reverse)

seq1  GGCAGAGGGAGTGTAAGGCCAGGCTTT-AAAACTTTGTG-AGATTCAGTC  48
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GGCAGAGGGAGTGTAAGGCCAGGCTTTAAAAACTTTGTGAAGATTCAGTC  50

seq1  TCAAAACAAAAGAATTTTAAATT-AAAAAATGGGGCTGAGGCTCAAACTC  97
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAAAACAAAAGAATTTTAAATTAAAAAAATGGGGCTGAGGCTCAAACTC  100

seq1  AAGAGACTCAAACCCCAACACCACAAACACAATAAATAAATTAAAAACAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTCAAACCCCAACACCACAAACACAATAAATAAATTAAAAACAA  150

seq1  TATAAATAAATGCTATTTAAAAACTCATATATAGGAAAGATACTGCTGGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAATGCTATTTAAAAACTCATATATAGGAAAGATACTGCTGGC  200

seq1  AAAGCTTTTTCCTAACTTTCCTAATTTGAAAGCTCCCTGTTGGAGGTGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTTCCTAACTTTCCTAATTTGAAAGCTCCCTGTTGGAGGTGTT  250

seq1  TCAGTAGTTAATGAGGGGCCATACTTTGACGAACATGTGAGTTGAAGAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTTAATGAGGGGCCATACTTTGACGAACATGTGAGTTGAAGAGA  300

seq1  TTCGCGATGCAACGCTAAGGGCGAATGGCAGATATATACGTAGGAACAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCGATGCAACGCTAAGGGCGAATGGCAGATATATACGTAGGAACAAA  350

seq1  ACATAATTCATTAAACAGTTTCTACAAGTCAAATGATAAGCCTTATCTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTCATTAAACAGTTTCTACAAGTCAAATGATAAGCCTTATCTGT  400

seq1  CCTTAGAGATCAGGGTCAAGGGTCATTTTTCCCTTAAAGTGTGAAAACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGATCAGGGTCAAGGGTCATTTTTCCCTTAAAGTGTGAAAACAC  450

seq1  TTTAAAAATGGAAACATATATTGAATTTTTTTTAATTACTTAGATAGACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGGAAACATATATTGAATTTTTTTTAATTACTTAGATAGACC  500

seq1  TTGGACAAGATTCAGAAAATGGAAATCACTCCAGAAACCCCTTTCCACTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAAGATTCAGAAAATGGAAATCACTCCAGAAACCCCTTTCCACTT  550

seq1  TCAATGAAGAAATCTTTGATCTGAATTC  575
      ||||||||||||||||||||||||||||
seq2  TCAATGAAGAAATCTTTGATCTGAATTC  578


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