BAC Information

Click to search

BAC

Clone NameB6Ng01-220N05
Chromosome12 (Build37)
Map Location 66,033,144 - 66,172,141
singlet/doubletdoublet
Overlap geneKlhl28, A430041B07Rik, Prpf39, Fkbp3
Upstream geneLOC435302, EG623046, LOC623123, LOC217645, LOC217647, Gm527
Downstream geneFancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220N05.bB6Ng01-220N05.g
ACCGA036285GA036286
length1,0951,023
definitionB6Ng01-220N05.b B6Ng01-220N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,171,039 - 66,172,141)(66,033,144 - 66,034,149)
sequence
gaattctttttttttttttttttttttttatttatttatttatttttttt
tttcacttgtggaattctgaggacaacttgtgagaatcagttctctgggt
gtgggttctggggatcaaattcaggttggttaggtaggctcttacaatgt
gacagactattattctacttcaactttctctcatcactcttgatacacat
gcttcggctaatcttgtactatagggaagctgggtctatttaactttcct
ttgtgtgtgtggtggagggctcagaagacagcttgcaggagcctgttttc
tcctgccgttcaggacacgtggattgaacccaggtcatcagactaaacat
gagtcttttgaaaagcttggtccccagactagggtaagagctaagatctt
agtccagataatatgccacaagccatacactatcctcaccagatcgtagg
ttataagtaggtcctggtagctattcccgacttggcttgaggcttccaaa
ggcatggcaaaaaacattctatcaggagcaactgtttatagtatgcttaa
tgtctagataatctttttgggtattctgaaatgggagaaaggttagaatg
aatctgtctgccatatatactgtatagctgtaaccctttaatacctgata
ttttaaaatcagcttttaaagaatgaggtataaaatacagtgtttgttgt
atttcttcattatttctattataaatcacagcagctagcacagaaagatt
gtttcaaagtttcttggtcttgagacagagtcttactatctgaccagact
ggtcttgaattcctgagctcaagggatcctcctgcctcagactataatga
gacagggtctcatgtatctcagcctaggcgagcattcactagatacctgg
ccatggcttgctgcctctcagtgctgggattttaggtgtgcagatgcagt
ttatgtgttgggtggaattaagtccagtggttgtgtgtattcagtcagca
ctctacctcctgagtacagctcagcttcggactacatttcctattagatt
cttccacttggaggcaattgaactaatcaagctttcctttgtagt
gaattcatttccgttgtatacatacctaggagtaggattgctggaatata
tatatatggtcattccatttttttaaagatttattttaattttgaatcat
ttatgtatctatgtgtgttcacacaagtgcagattccctaggtcagatgt
gagaggcatcaggtccctgaagaactgaagtaagttatgagctgcctatg
tgtgtgctgtgaactaaaactgtttctttcagaagaacaacttagccatc
tctgctgcctggtagttcctttaataaaataataaataaataaataaata
aataaacaaacataagaagaataaatcatcttttgttgattgggaaaaaa
cagaaggaaataatgtaaaagacaaaaagatatccgttggtcacagcttc
catgaagattcaatccaaaagactggctttcaccaccctatatctttttt
aaccatttatcaactgtcaaagaagcttccaacacatgagcctccagtga
acatctcattatcaggccactatgtgtctatactttttttccataatagt
ttactaatttacatatccaccaactaagtgcaagtatttccttttcgttt
ttaccaacagaaatgttttatttgtttttttcattatcatgactctaact
ggagtgaagtaatttttaaatttaatttccatttccaggatgctgagtat
ttttcataattttattggccatttgtatgattctgagaaatgtctactac
tcaggttttttttctttagtttttgtatatttttgccttttagccttatc
agatgtataatttgcagataacttctccatttttagaacacttttcccca
tgcttattgtctagtacactgtcatatgtctactttgacttttcattttc
tgggctttggggggattgtctaaaactatagttgccctgttatgattatt
tttgaaaacacttcaatgagtctttttgttaataagttattttcggtagc
ttccaagtttttaacatttaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66171039_66172141
seq2: B6Ng01-220N05.b_44_1138 (reverse)

seq1  ACTACAAAGAAAAAGCTGATTAGTTCAATTTTCCCTCAAGTAGAAAGGAT  50
      ||||||||| |||   |||||||||||| || ||  ||||| | ||| ||
seq2  ACTACAAAGGAAAGCTTGATTAGTTCAA-TTGCCTCCAAGT-GGAAGAAT  48

seq1  CTAAAATAAGAAATGTAGTCTGGAGCTGAGGCTGTAACTCAGGAGGTAGA  100
      ||  |||| ||||||||||| | |||||| ||||| ||||||||||||||
seq2  CT--AATAGGAAATGTAGTCCGAAGCTGA-GCTGT-ACTCAGGAGGTAGA  94

seq1  GTGCTTGACTG-ATACACACAAACCACTGGGCTCTATTCCACCCAACACA  149
      |||| |||||| |||||||| ||||||||| ||  |||||||||||||||
seq2  GTGC-TGACTGAATACACAC-AACCACTGGACTTAATTCCACCCAACACA  142

seq1  TAAACTGCATCTGCACACCTAAAATCCCAGCACTGAGAGGCAGCAAGGCC  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAACTGCATCTGCACACCTAAAATCCCAGCACTGAGAGGCAGCAA-GCC  191

seq1  ATGGCCAGGTATCTAGTGAATGCTCGCCTAGGCTGAGATACATGAGACCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGGTATCTAGTGAATGCTCGCCTAGGCTGAGATACATGAGACCC  241

seq1  TGTCTCATTATAGTCTGAGGCAGGAGGATCCCTTGAGCTCAGGAATTCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATTATAGTCTGAGGCAGGAGGATCCCTTGAGCTCAGGAATTCAA  291

seq1  GACCAGTCTGGTCAGATAGTAAGACTCTGTCTCAAGACCAAGAAACTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTCTGGTCAGATAGTAAGACTCTGTCTCAAGACCAAGAAACTTTG  341

seq1  AAACAATCTTTCTGTGCTAGCTGCTGTGATTTATAATAGAAATAATGAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCTTTCTGTGCTAGCTGCTGTGATTTATAATAGAAATAATGAAG  391

seq1  AAATACAACAAACACTGTATTTTATACCTCATTCTTTAAAAGCTGATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAACAAACACTGTATTTTATACCTCATTCTTTAAAAGCTGATTTT  441

seq1  AAAATATCAGGTATTAAAGGGTTACAGCTATACAGTATATATGGCAGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCAGGTATTAAAGGGTTACAGCTATACAGTATATATGGCAGACA  491

seq1  GATTCATTCTAACCTTTCTCCCATTTCAGAATACCCAAAAAGATTATCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTCTAACCTTTCTCCCATTTCAGAATACCCAAAAAGATTATCTA  541

seq1  GACATTAAGCATACTATAAACAGTTGCTCCTGATAGAATGTTTTTTGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAAGCATACTATAAACAGTTGCTCCTGATAGAATGTTTTTTGCCA  591

seq1  TGCCTTTGGAAGCCTCAAGCCAAGTCGGGAATAGCTACCAGGACCTACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGGAAGCCTCAAGCCAAGTCGGGAATAGCTACCAGGACCTACTT  641

seq1  ATAACCTACGATCTGGTGAGGATAGTGTATGGCTTGTGGCATATTATCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTACGATCTGGTGAGGATAGTGTATGGCTTGTGGCATATTATCTG  691

seq1  GACTAAGATCTTAGCTCTTACCCTAGTCTGGGGACCAAGCTTTTCAAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGATCTTAGCTCTTACCCTAGTCTGGGGACCAAGCTTTTCAAAAG  741

seq1  ACTCATGTTTAGTCTGATGACCTGGGTTCAATCCACGTGTCCTGAACGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTTTAGTCTGATGACCTGGGTTCAATCCACGTGTCCTGAACGGC  791

seq1  AGGAGAAAACAGGCTCCTGCAAGCTGTCTTCTGAGCCCTCCACCACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAACAGGCTCCTGCAAGCTGTCTTCTGAGCCCTCCACCACACAC  841

seq1  ACAAAGGAAAGTTAAATAGACCCAGCTTCCCTATAGTACAAGATTAGCCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAAAGTTAAATAGACCCAGCTTCCCTATAGTACAAGATTAGCCG  891

seq1  AAGCATGTGTATCAAGAGTGATGAGAGAAAGTTGAAGTAGAATAATAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTGTATCAAGAGTGATGAGAGAAAGTTGAAGTAGAATAATAGTC  941

seq1  TGTCACATTGTAAGAGCCTACCTAACCAACCTGAATTTGATCCCCAGAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATTGTAAGAGCCTACCTAACCAACCTGAATTTGATCCCCAGAAC  991

seq1  CCACACCCAGAGAACTGATTCTCACAAGTTGTCCTCAGAATTCCACAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCAGAGAACTGATTCTCACAAGTTGTCCTCAGAATTCCACAAGT  1041

seq1  GAAAAAAAAAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAGA  1091

seq1  ATTC  1103
      ||||
seq2  ATTC  1095

seq1: chr12_66033144_66034149
seq2: B6Ng01-220N05.g_69_1091

seq1  GAATTCATTTCCGTTGTATACATACCTAGGAGTAGGATTGCTGGAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCGTTGTATACATACCTAGGAGTAGGATTGCTGGAATATA  50

seq1  TATATATGGTCATTCCATTTTTTTAAAGATTTATTTTAATTTTGAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGGTCATTCCATTTTTTTAAAGATTTATTTTAATTTTGAATCAT  100

seq1  TTATGTATCTATGTGTGTTCACACAAGTGCAGATTCCCTAGGTCAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATCTATGTGTGTTCACACAAGTGCAGATTCCCTAGGTCAGATGT  150

seq1  GAGAGGCATCAGGTCCCTGAAGAACTGAAGTAAGTTATGAGCTGCCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCATCAGGTCCCTGAAGAACTGAAGTAAGTTATGAGCTGCCTATG  200

seq1  TGTGTGCTGTGAACTAAAACTGTTTCTTTCAGAAGAACAACTTAGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGTGAACTAAAACTGTTTCTTTCAGAAGAACAACTTAGCCATC  250

seq1  TCTGCTGCCTGGTAGTTCCTTTAATAAAATAATAAATAAATAAATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCCTGGTAGTTCCTTTAATAAAATAATAAATAAATAAATAAATA  300

seq1  AATAAACAAACATAAGAAGAATAAATCATCTTTTGTTGATTGGGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAACATAAGAAGAATAAATCATCTTTTGTTGATTGGGAAAAAA  350

seq1  CAGAAGGAAATAATGTAAAAGACAAAAAGATATCCGTTGGTCACAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAAATAATGTAAAAGACAAAAAGATATCCGTTGGTCACAGCTTC  400

seq1  CATGAAGATTCAATCCAAAAGACTGGCTTTCACCACCCTATATCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATTCAATCCAAAAGACTGGCTTTCACCACCCTATATCTTTTTT  450

seq1  AACCATTTATCAACTGTCAAAGAAGCTTCCAACACATGAGCCTCCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTATCAACTGTCAAAGAAGCTTCCAACACATGAGCCTCCAGTGA  500

seq1  ACATCTCATTATCAGGCCACTATGTGTCTATACTTTTTTTCCATAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCATTATCAGGCCACTATGTGTCTATACTTTTTTTCCATAATAGT  550

seq1  TTACTAATTTACATATCCACCAACTAAGTGCAAGTATTTCCTTTTCGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATTTACATATCCACCAACTAAGTGCAAGTATTTCCTTTTCGTTT  600

seq1  TTACCAACAGAAATGTTTTATTTGTTTTTTTCATTATCATGACTCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAACAGAAATGTTTTATTTGTTTTTTTCATTATCATGACTCTAACT  650

seq1  GGAGTGAAGTAATTTTTAAATTTAATTTCCATTTCCAGGATGCTGAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAGTAATTTTTAAATTTAATTTCCATTTCCAGGATGCTGAGTAT  700

seq1  TTTTCATAATTTTATTGGCCATTTGTATGATTCTGAGAAATGTCTACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAATTTTATTGGCCATTTGTATGATTCTGAGAAATGTCTACTAC  750

seq1  TCAGG-TTTTTTTCTTTAGTTTTTGTATATTTTTGCCTTTTAGCCTTATC  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTTTTTTCTTTAGTTTTTGTATATTTTTGCCTTTTAGCCTTATC  800

seq1  AGATGTATAATTTGCAGATAACTTCTCCA-TTTTAGAACACTTTTCCCCA  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGATGTATAATTTGCAGATAACTTCTCCATTTTTAGAACACTTTTCCCCA  850

seq1  TGCTTATTGTCTAGTACACTGTCATATGTCTACTTTGAC-TTTCATTTTC  897
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCTTATTGTCTAGTACACTGTCATATGTCTACTTTGACTTTTCATTTTC  900

seq1  TGGGCTTT-GGGGGATTGTCTAAAACTATAGTTG-CCTGTTATGA-TATT  944
      |||||||| ||||||||||||||||||||||||| |||||||||| ||||
seq2  TGGGCTTTGGGGGGATTGTCTAAAACTATAGTTGCCCTGTTATGATTATT  950

seq1  TT--GAAACACTTC-ATGAGTC-TTTTGTTA--TAGTTATTT--CGTAGC  986
      ||   ||||||||| ||||||| ||||||||   ||||||||   |||||
seq2  TTTGAAAACACTTCAATGAGTCTTTTTGTTAATAAGTTATTTTCGGTAGC  1000

seq1  TT-CAAGTTTT--ACATTTAAGC  1006
      || ||||||||  ||||||||||
seq2  TTCCAAGTTTTTAACATTTAAGC  1023