BAC Information

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BAC

Clone NameB6Ng01-221A13
Chromosome12 (Build37)
Map Location 66,033,144 - 66,213,824
singlet/doubletdoublet
Overlap geneKlhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm
Upstream geneLOC435302, EG623046, LOC623123, LOC217645, LOC217647, Gm527
Downstream geneC79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221A13.bB6Ng01-221A13.g
ACCGA036439GA036440
length2171,021
definitionB6Ng01-221A13.b B6Ng01-221A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,213,606 - 66,213,824)(66,033,144 - 66,034,165)
sequence
aagggtagcctgggttcactaaaaatctaaaatacttttagttaaatata
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaattaagcatttgaac
ccgaagacccaggtatggtctctataacctatgcttggactaaaccccta
aattttattcatttactttcttacattcaaattggcttgtgtgcaccccc
attctacacattatata

gaattcatttccgttgtatacatacctaggagtaggattgctggaatata
tatatatggtcattccatttttttaaagatttattttaattttgaatcat
ttatgtatctatgtgtgttcacacaagtgcagattccctaggtcagatgt
gagaggcatcaggtccctgaagaactgaagtaagttatgagctgcctatg
tgtgtgctgtgaactaaaactgtttctttcagaagaacaacttagccatc
tctgctgcctggtagttcctttaataaaataataaataaataaataaata
aataaacaaacataagaagaataaatcatcttttgttgattgggaaaaaa
cagaaggaaataatgtaaaagacaaaaagatatccgttggtcacagcttc
catgaagattcaatccaaaagactggctttcaccaccctatatctttttt
aaccatttatcaactgtcaaagaagcttccaacacatgagcctccagtga
acatctcattatcaggccactatgtgtctatactttttttccataatagt
ttactaatttacatatccaccaactaagtgcaagtatttccttttcgttt
ttaccaacagaaatgttttatttgtttttttcattatcatgactctaact
ggagtgaagtaatttttaaatttaatttccatttccaggatgctgagtat
ttttcataattttattggccatttgtatgattctgagaaatgtctactac
tcaggtttttttctttagtttttgtatatttttgccttttagccttatca
gatgtataatttgcagataacttctccattttagaacacttttccccatg
cttattgtctagtacactgtcatatgtctactttgactttcattttctgg
gctttgggggattgtctaaaactatagttgcctgttatgatatttgaaac
actccatgagtcttttgttatagtattttcgtagcttcaagttttacatt
ttaagcctctgatccatgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66213606_66213824
seq2: B6Ng01-221A13.b_51_267 (reverse)

seq1  TATATACTATGTGTAGAATGGGGGTGCACACATGCCAGTTTGAGTGTGTG  50
      ||||||  |||||||||||||||||||||||| |||| ||||| |||  |
seq2  TATATA--ATGTGTAGAATGGGGGTGCACACAAGCCAATTTGAATGTAAG  48

seq1  AAAGTCAATGGATAATTTTTAGGGGTTTTGTCCTAGCATAGGTTCTAGAG  100
      ||||| |||| ||||  ||||||||||| |||| |||||||||| |||||
seq2  AAAGTAAATGAATAAAATTTAGGGGTTTAGTCCAAGCATAGGTTATAGAG  98

seq1  ACCATACCTGGGTCTTCGGGTTCAAATGCTTAATTTCACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACCTGGGTCTTCGGGTTCAAATGCTTAATTTCACACACACACACA  148

seq1  CACACACACACACACACATTATATTTAACTAAAAGTATTTTAGATTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATTATATTTAACTAAAAGTATTTTAGATTTTTA  198

seq1  GTGAACCCAGGCTACCCTT  219
      |||||||||||||||||||
seq2  GTGAACCCAGGCTACCCTT  217


seq1: chr12_66033144_66034165
seq2: B6Ng01-221A13.g_65_1085

seq1  GAATTCATTTCCGTTGTATACATACCTAGGAGTAGGATTGCTGGAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCGTTGTATACATACCTAGGAGTAGGATTGCTGGAATATA  50

seq1  TATATATGGTCATTCCATTTTTTTAAAGATTTATTTTAATTTTGAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGGTCATTCCATTTTTTTAAAGATTTATTTTAATTTTGAATCAT  100

seq1  TTATGTATCTATGTGTGTTCACACAAGTGCAGATTCCCTAGGTCAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATCTATGTGTGTTCACACAAGTGCAGATTCCCTAGGTCAGATGT  150

seq1  GAGAGGCATCAGGTCCCTGAAGAACTGAAGTAAGTTATGAGCTGCCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCATCAGGTCCCTGAAGAACTGAAGTAAGTTATGAGCTGCCTATG  200

seq1  TGTGTGCTGTGAACTAAAACTGTTTCTTTCAGAAGAACAACTTAGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGTGAACTAAAACTGTTTCTTTCAGAAGAACAACTTAGCCATC  250

seq1  TCTGCTGCCTGGTAGTTCCTTTAATAAAATAATAAATAAATAAATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCCTGGTAGTTCCTTTAATAAAATAATAAATAAATAAATAAATA  300

seq1  AATAAACAAACATAAGAAGAATAAATCATCTTTTGTTGATTGGGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAACATAAGAAGAATAAATCATCTTTTGTTGATTGGGAAAAAA  350

seq1  CAGAAGGAAATAATGTAAAAGACAAAAAGATATCCGTTGGTCACAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAAATAATGTAAAAGACAAAAAGATATCCGTTGGTCACAGCTTC  400

seq1  CATGAAGATTCAATCCAAAAGACTGGCTTTCACCACCCTATATCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATTCAATCCAAAAGACTGGCTTTCACCACCCTATATCTTTTTT  450

seq1  AACCATTTATCAACTGTCAAAGAAGCTTCCAACACATGAGCCTCCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTATCAACTGTCAAAGAAGCTTCCAACACATGAGCCTCCAGTGA  500

seq1  ACATCTCATTATCAGGCCACTATGTGTCTATACTTTTTTTCCATAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCATTATCAGGCCACTATGTGTCTATACTTTTTTTCCATAATAGT  550

seq1  TTACTAATTTACATATCCACCAACTAAGTGCAAGTATTTCCTTTTCGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATTTACATATCCACCAACTAAGTGCAAGTATTTCCTTTTCGTTT  600

seq1  TTACCAACAGAAATGTTTTATTTGTTTTTTTCATTATCATGACTCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAACAGAAATGTTTTATTTGTTTTTTTCATTATCATGACTCTAACT  650

seq1  GGAGTGAAGTAATTTTTAAATTTAATTTCCATTTCCAGGATGCTGAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAGTAATTTTTAAATTTAATTTCCATTTCCAGGATGCTGAGTAT  700

seq1  TTTTCATAATTTTATTGGCCATTTGTATGATTCTGAGAAATGTCTACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAATTTTATTGGCCATTTGTATGATTCTGAGAAATGTCTACTAC  750

seq1  TCAGGTTTTTTTCTTTAGTTTTTGTATATTTTTGCCTTTTAGCCTTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTTTTTCTTTAGTTTTTGTATATTTTTGCCTTTTAGCCTTATCA  800

seq1  GATGTATAATTTGCAGATAACTTCTCCATTTTAGAACACTTTTCCCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATAATTTGCAGATAACTTCTCCATTTTAGAACACTTTTCCCCATG  850

seq1  CTTATTGTCTAGTACACTGTCATATGTCTACTTTGACTTTCATTTTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTCTAGTACACTGTCATATGTCTACTTTGACTTTCATTTTCTGG  900

seq1  GCTTTGGGGGATTGTCTAAAACTATAGTTGCCTGTTATGATATTTTGAAA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTTTGGGGGATTGTCTAAAACTATAGTTGCCTGTTATGATA-TTTGAAA  949

seq1  CACTTCATGAGTCTTTTGTTATAGTTATTTCGTAGCTTCAAGTTTTACA-  999
      |||| ||||||||||||||||||||  |||||||||||||||||||||| 
seq2  CACTCCATGAGTCTTTTGTTATAGTATTTTCGTAGCTTCAAGTTTTACAT  999

seq1  TTTAAGCCTCTGATCCATTGTGA  1022
      ||||||||||||||||| |||||
seq2  TTTAAGCCTCTGATCCA-TGTGA  1021


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