BAC Information

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BAC

Clone NameB6Ng01-221G23
Chromosome12 (Build37)9 (Build37)
Map Location 78,963,805 - 78,963,87866,714,147 - 66,715,186
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221G23.bB6Ng01-221G23.g
ACCGA036731GA036732
length7661,046
definitionB6Ng01-221G23.b B6Ng01-221G23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,963,805 - 78,963,878)(66,714,147 - 66,715,186)
sequence
gaattcttaaaaattaaaggcagaagagcaaaacaattgaacaaaggcat
caaaaagaattatccacctgacaacagacatataaagatgtgtttattgt
ccagcaaatgaaagtttgaagtttattgtgtttctactatattccaagca
ggataagaaagaaagttataacaagtgttggcaagaacacagaggagctg
aatttcataagtaagtagttagtgcttaagtcaacataaccatgctgaca
aactgagagataccagcaactgactactgtactctaaccagagtgcttct
gggtatgtgtccaaaagcagtgtgcatgtgtttttgctgatgggcatata
tttaatacttatatttaatatatctagtcacactctacataatagttagc
agctagagagctaatgaggtgactcagtgggtaagtgcttgttgccttac
ttgaggtcagaccctcgggactcacattaaaaggtgggtgcagccatcag
acgttgtgatgcatgcttttatcccagcactttgcaggcagaaacgggga
tatttgtgagtttgaggccaccaaggttacaaagtaaaattctgtcttta
aaaaaagtggcatggaacatgacatttgtagatgccaggagcttgctgct
tagctagtctaaccaaaattcagaattccaggttcagtgagataccctga
ctcagaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaaga
aaagaaaagaaaggga

gaattcctatttcctctctatcctgccctctttaactgggaagaagtcct
gttctagtctctcccctgctcagttattgggtgatcagctagctttattg
accaatcagagaataattggggaacaaaaaacacaacatcaagacgggag
attctcagagtaaggattgcagtcacatttgggggcaccgaacacagcat
ttgaatcatacaaggataatctttacattatgcctccagaggggagagat
gaaggaaggaaaaaagaaaggaagagtcatgaagacaagggcatcataaa
agggaataggtagctggactgttctcttctcatcttgcttttgttgtcag
gagctgacattagtcagaggataaactggaacctttagaaaggcagagat
gagggaggtacagaggaaagagctgggacccctggactgagggtctctga
acatgtctctgctgggcttactctctgagttagcagctacattaagctaa
ttggagttgaagtctgttacttgtagttcagagtatcctaaccaatataa
ttctatcgtaattactctcttgtctcagaaaaggaaatattaaagtgaat
gttggttttctgcatttctattggtattattgtcaagctaattataaata
tcttcatttttagggggagagattttatatcactgtaactattatgagaa
cacgcatgcttgtctgtgtttgggtgtgcatacatgtgtgtgcacttgtc
agtaatattaatacccttcgtttctagtgaaagatcctgattgtgtttcc
acgttagctaaccaactatactctgcagctaaagcaatgccaaataccac
catttcacaaagaagttgttctctgacctccactttctgctatggagata
gcttgtttcccacgcatatgtaaggaaagaaagaaaaacaagctttaaac
aaatttaaatttaatagtgttatgagcccagaattgattcatgagtcagg
tggaacccagaataggataggttccagttgatgcttcaaggctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_78963805_78963878
seq2: B6Ng01-221G23.b_551_810 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TCCCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTT  50

seq1  --------------------------------------------------  0
                                                        
seq2  TTCTTTTCTTTCTGAGTCAGGGTATCTCACTGAACCTGGAATTCTGAATT  100

seq1  --------------------------------------------------  0
                                                        
seq2  TTGGTTAGACTAGCTAAGCAGCAAGCTCCTGGCATCTACAAATGTCATGT  150

seq1  TCC------CTTTCTTT--------TCTTTTCCTGTGATATAT-------  29
      |||      |||| |||          |||| || ||  |  |       
seq2  TCCATGCCACTTTTTTTAAAGACAGAATTTTACTTTGTAACCTTGGTGGC  200

seq1  CACAAACTCACAAA-------------------GAAGTGCTGGGATTACA  60
      | ||||||||||||                    ||||||||||| || |
seq2  CTCAAACTCACAAATATCCCCGTTTCTGCCTGCAAAGTGCTGGGA-TAAA  249

seq1  AGCATGAAACATCA  74
      ||||||   |||||
seq2  AGCATG---CATCA  260


seq1: chr9_66714147_66715186
seq2: B6Ng01-221G23.g_67_1112 (reverse)

seq1  GGTAGCCCTGGAGCATC-ACT-GAACCTATCCTATTCTGGGGTCCACCTG  48
      ||||||| || |||||| ||| ||||||||||||||||||| ||||||||
seq2  GGTAGCCTTGAAGCATCAACTGGAACCTATCCTATTCTGGGTTCCACCTG  50

seq1  ACTCATGAATC-ATTCTGGGCTCATAAACACTATTAAATTT-AATTTGTT  96
      ||||||||||| ||||||||||||| ||||||||||||||| ||||||||
seq2  ACTCATGAATCAATTCTGGGCTCAT-AACACTATTAAATTTAAATTTGTT  99

seq1  TAAAGCTTGTTTTTCTTTCTTTCCTTACATATGCGTGGG-AACAAGCTAT  145
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAGCTTGTTTTTCTTTCTTTCCTTACATATGCGTGGGAAACAAGCTAT  149

seq1  CTCCATAGCAG-AAGTGGAGGTCAGAGAACAACTTCTTTGTG-AATGGTG  193
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  CTCCATAGCAGAAAGTGGAGGTCAGAGAACAACTTCTTTGTGAAATGGTG  199

seq1  GTATTTGGCATTGCTTTAGCTGCAGAGTATAGTTGGTTAGCTAACGTGGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGCATTGCTTTAGCTGCAGAGTATAGTTGGTTAGCTAACGTGGA  249

seq1  AACACAATCAGGATCTTTCACTAGAAACGAAGGGTATTAATATTACTGAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATCAGGATCTTTCACTAGAAACGAAGGGTATTAATATTACTGAC  299

seq1  AAGTGCACACACATGTATGCACACCCAAACACAGACAAGCATGCGTGTTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACACACATGTATGCACACCCAAACACAGACAAGCATGCGTGTTC  349

seq1  TCATAATAGTTACAGTGATATAAAATCTCTCCCCCTAAAAATGAAGATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAGTTACAGTGATATAAAATCTCTCCCCCTAAAAATGAAGATAT  399

seq1  TTATAATTAGCTTGACAATAATACCAATAGAAATGCAGAAAACCAACATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTAGCTTGACAATAATACCAATAGAAATGCAGAAAACCAACATT  449

seq1  CACTTTAATATTTCCTTTTCTGAGACAAGAGAGTAATTACGATAGAATTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAATATTTCCTTTTCTGAGACAAGAGAGTAATTACGATAGAATTA  499

seq1  TATTGGTTAGGATACTCTGAACTACAAGTAACAGACTTCAACTCCAATTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTAGGATACTCTGAACTACAAGTAACAGACTTCAACTCCAATTA  549

seq1  GCTTAATGTAGCTGCTAACTCAGAGAGTAAGCCCAGCAGAGACATGTTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATGTAGCTGCTAACTCAGAGAGTAAGCCCAGCAGAGACATGTTCA  599

seq1  GAGACCCTCAGTCCAGGGGTCCCAGCTCTTTCCTCTGTACCTCCCTCATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTCAGTCCAGGGGTCCCAGCTCTTTCCTCTGTACCTCCCTCATC  649

seq1  TCTGCCTTTCTAAAGGTTCCAGTTTATCCTCTGACTAATGTCAGCTCCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTTCTAAAGGTTCCAGTTTATCCTCTGACTAATGTCAGCTCCTG  699

seq1  ACAACAAAAGCAAGATGAGAAGAGAACAGTCCAGCTACCTATTCCCTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAGCAAGATGAGAAGAGAACAGTCCAGCTACCTATTCCCTTTT  749

seq1  ATGATGCCCTTGTCTTCATGACTCTTCCTTTCTTTTTTCCTTCCTTCATC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCCCTTGTCTTCATGACTCTTCCTTTCTTTTTTCCTTCCTTCATC  799

seq1  TCTCCCCTCTGGAGGCATAATGTAAAGATTATCCTTGTATGATTCAAATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCTGGAGGCATAATGTAAAGATTATCCTTGTATGATTCAAATG  849

seq1  CTGTGTTCGGTGCCCCCAAATGTGACTGCAATCCTTACTCTGAGAATCTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCGGTGCCCCCAAATGTGACTGCAATCCTTACTCTGAGAATCTC  899

seq1  CCGTCTTGATGTTGTGTTTTTTGTTCCCCAATTATTCTCTGATTGGTCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTGATGTTGTGTTTTTTGTTCCCCAATTATTCTCTGATTGGTCAA  949

seq1  TAAAGCTAGCTGATCACCCAATAACTGAGCAGGGGAGAGACTAGAACAGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAGCTGATCACCCAATAACTGAGCAGGGGAGAGACTAGAACAGG  999

seq1  ACTTCTTCCCAGTTAAAGAGGGCAGGATAGAGAGGAAATAGGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCCAGTTAAAGAGGGCAGGATAGAGAGGAAATAGGAATTC  1046


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