BAC Information

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BAC

Clone NameB6Ng01-221L14
Chromosome12 (Build37)
Map Location 48,287,275 - 48,477,995
singlet/doubletdoublet
Overlap geneLOC100039190
Upstream geneLOC664952, Nova1
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221L14.bB6Ng01-221L14.g
ACCGA036938GA036939
length99951
definitionB6Ng01-221L14.b B6Ng01-221L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,477,897 - 48,477,995)(48,287,275 - 48,288,226)
sequence
agtgtcatgctattaagaacaataaaagaaggaagtttcatgatccaaaa
catacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtg
gaattcaatgtggagccttgtaaagagaagagaaggaataatggagaatg
gaaagatcttatattagtgtgaaattaaaaagaaagaacagaatgttcaa
gtggttattaagaagctagagaacaaaactagatgaaagacacagatggc
ttaggaaagagatttgctaagtatgtgttgttagggtggatagcaacttg
atgtccttcaaactctcttgccaatatttttcagtgattgcttctacatg
cttgttgtagtaatgcatcttaatccaaaccaattactttcttatattct
catttgaagttagaaatttctttgatgagaaaatacaaaagaatttactg
cataaatatcatagaaagtttagtcttcagttatgagttatgtgttaaat
ttgttaaaactgaccttcagaatatctctgtaatgatactgtagtgatgc
aatatctgtctttttaattttcccccttgaatgtgtagaatgtatgctct
tttgcatgttttgtaacaaaggagagatactcagaggaaagcacacacat
ggagaagcatcctgtctaaactcagtattagataaactgtgtaaaggccc
aaagatttctcacagtgtgtgtagcttctctgagatcacagcattgcttc
tgtgaaaagatacacttatagaaagtatcaattaaaagcccgtagcctac
agtaagaaaagtgatattttgataggctgctttttgaagcagtaagcacc
tttcatgtcatttaataatggcttggatgggtttttgagaatgctaagtg
tcaagtttcctgaaaacaagaaatgtactttttggtgaactcatcagact
ttcaaatctaaatcaatgagtcatgctatcttaaaacagaatattctaat
tatttaaggttatggatatgataaggatcatatttccaggctataaattg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48477897_48477995
seq2: B6Ng01-221L14.b_48_146 (reverse)

seq1  CACCACACACACACACACACACACACACACACACACACACACATGTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACACACACACACACACACACACACACACACACACACATGTATGT  50

seq1  TTTGGATCATGAAACTTCCTTCTTTTATTGTTCTTAATAGCATGACACT  99
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCATGAAACTTCCTTCTTTTATTGTTCTTAATAGCATGACACT  99

seq1: chr12_48287275_48288226
seq2: B6Ng01-221L14.g_74_1024

seq1  GAATTCAATGTGGAGCCTTGTAAAGAGAAGAGAAGGAATAATGGAGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTGGAGCCTTGTAAAGAGAAGAGAAGGAATAATGGAGAATG  50

seq1  GAAAGATCTTATATTAGTGTGAAATTAAAAAGAAAGAACAGAATGTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTTATATTAGTGTGAAATTAAAAAGAAAGAACAGAATGTTCAA  100

seq1  GTGGTTATTAAGAAGCTAGAGAACAAAACTAGATGAAAGACACAGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATTAAGAAGCTAGAGAACAAAACTAGATGAAAGACACAGATGGC  150

seq1  TTAGGAAAGAGATTTGCTAAGTATGTGTTGTTAGGGTGGATAGCAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAGAGATTTGCTAAGTATGTGTTGTTAGGGTGGATAGCAACTTG  200

seq1  ATGTCCTTCAAACTCTCTTGCCAATATTTTTCAGTGATTGCTTCTACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTCAAACTCTCTTGCCAATATTTTTCAGTGATTGCTTCTACATG  250

seq1  CTTGTTGTAGTAATGCATCTTAATCCAAACCAATTACTTTCTTATATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTAGTAATGCATCTTAATCCAAACCAATTACTTTCTTATATTCT  300

seq1  CATTTGAAGTTAGAAATTTCTTTGATGAGAAAATACAAAAGAATTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAGTTAGAAATTTCTTTGATGAGAAAATACAAAAGAATTTACTG  350

seq1  CATAAATATCATAGAAAGTTTAGTCTTCAGTTATGAGTTATGTGTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATCATAGAAAGTTTAGTCTTCAGTTATGAGTTATGTGTTAAAT  400

seq1  TTGTTAAAACTGACCTTCAGAATATCTCTGTAATGATACTGTAGTGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAACTGACCTTCAGAATATCTCTGTAATGATACTGTAGTGATGC  450

seq1  AATATCTGTCTTTTTAA-TTTCCCCCTTGAATGTGTAGAATGTATGCTC-  498
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  AATATCTGTCTTTTTAATTTTCCCCCTTGAATGTGTAGAATGTATGCTCT  500

seq1  TTTGCATGTTTTGTAACAAAGGAGAGATACTCAGAGGAAAGCACACACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTTTTGTAACAAAGGAGAGATACTCAGAGGAAAGCACACACAT  550

seq1  GGAGAAGCATCCTGTCTAAACTCAGTATTAGATAAACTGTGTAAAGGCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCATCCTGTCTAAACTCAGTATTAGATAAACTGTGTAAAGGCCC  600

seq1  AAAGATTTCTCACAGTGTGTGTAGCTTCTCTGAGATCACAGCATTGCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTCTCACAGTGTGTGTAGCTTCTCTGAGATCACAGCATTGCTTC  650

seq1  TGTGAAAAGATACACTTATAGAAAGTATCAATTAAAAGCCCGTAGCCTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGATACACTTATAGAAAGTATCAATTAAAAGCCCGTAGCCTAC  700

seq1  AGTAAGAAAAGTGATATTTTGATAGGCTGCTTTTTGAAGCAGTAAGCACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAAAGTGATATTTTGATAGGCTGCTTTTTGAAGCAGTAAGCACC  750

seq1  TTTCATGTCATTTAATAATGGCTTGGAT-GGTTTTTGAGAA-GCTAAGTG  796
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  TTTCATGTCATTTAATAATGGCTTGGATGGGTTTTTGAGAATGCTAAGTG  800

seq1  TCAAGTTTCCTGAAAACAAGAAATGTAC-TTTTGGTGAACTCATTCAGAC  845
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  TCAAGTTTCCTGAAAACAAGAAATGTACTTTTTGGTGAACTCA-TCAGAC  849

seq1  ATTCAAATCTTAAATCAATGAGTCATGCTATCTTAAAACAGAATATTTTT  895
       |||||||| ||||||||||||||||||||||||||||||||||| || |
seq2  TTTCAAATC-TAAATCAATGAGTCATGCTATCTTAAAACAGAATA-TTCT  897

seq1  ATTTATTTAAGGTTATGGATATGATAAGGATCAAATTTCCCAGGCCTAAG  945
      | ||||||||||||||||||||||||||||||| |||| ||||||   | 
seq2  AATTATTTAAGGTTATGGATATGATAAGGATCATATTT-CCAGGC--TAT  944

seq1  AAATTGT  952
      |||||||
seq2  AAATTGT  951