BAC Information

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BAC

Clone NameB6Ng01-221O09
Chromosome12 (Build37)
Map Location 116,488,999 - 116,635,683
singlet/doubletdoublet
Overlap geneIgh, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544
Upstream geneEG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936
Downstream geneEG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221O09.bB6Ng01-221O09.g
ACCGA037064GA037065
length951970
definitionB6Ng01-221O09.b B6Ng01-221O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,634,688 - 116,635,683)(116,488,999 - 116,489,958)
sequence
gaattcttagccccattttaaccactgctggtcctcaactcaccttgggg
tagatttcattttataagcaataatttttttaaagaaatatctatctatc
tatctatctatctatctatctatctatctatctatctatctatctatcta
tctatctatcatctatctatctatctacctatctatttatttatttaatg
tatatgaggacactattgctctctttagaaacaccagaataggataccag
accccactatagatgggctgtgagccaccacgtggttcctaggaatttaa
ctcaagacctctggaagaacagtcagtgatcttaaccactgagccatctc
tccagccctgcaggtagacatgttgtggttttacttgagtttgcccaatc
tgtctggagcagtaacatattcttgcaactccagtgttggcggggcttag
ctgtatggagaattgctcttgtttactgatagaagatcgatggtatttgt
ttctacattatcatcaatgatcctctcaagtcatgttcttcctcatgcat
tgatcaatctctggcagttccattgtagtagtgtacaggagagatcagag
tgttgttgtatcatgaggctgtaactggaccagagcagctgaagagaaga
gcaacagtgagtcttaaggtaattcatcaccatgtatccatggatgaaat
cctgggactctcacaacagagtcatagaacaggaggactagattaacact
ctgtaatgtagcattaaacagtcacattgagacgaatagaatcaagcaat
gtattgtgcaactcatctgtttacatactacatttcgtgcatttaatgag
atgggatagaagggatttcactcacaggatctatagtcagatatgtgtgc
ttagaaactttatcttctacctgtgtccttctatcaagtgatcctcttaa
t
gaattcctattccctacaaatccctcaattcttctcccaacacttccata
agacacccatagttccatccaatgtgtggttttgggtctttctgcaattg
attcagtcagctgctggatagtaattgaaagagataaagagacggaaaat
gattcttatttttatattttagtttgtgtttgattgaagtgtgagagaaa
gaaagggtactgaatttttcctgcctataagaaatgccggtacgaagaca
gagcagagactgtgggaatggccaaccaaatggccaaagttgagacccat
ctcatgggaaagcaacaatctctgacactattaatgacaccctattatgc
ctgcagatatgtgcttctcataactatcctctgagagtctctacctaggg
catgaagttaggttggtatcaaaggaatgatgatctatgaggagttgggg
aaaagaaaaatgtcctctgaatgtactgtttatattatttttcaataaac
aaaggtaatttaaactgaacaaactgggatcaaaagccctaaatcttgtg
tacttctgatttttctataaattagaacatcatggaaagacaaatatgtt
catttatttctggaatgctcatgcagaacttggttgttcagtttccagta
atttctggtcagtttcctgttactctattgacccttctctttataatttc
tctcttcctgcactgcaaataataaagtaagagtctgtggagaacattac
atgatttgctgctcagacattttctgagacatttacagagttagagcaat
gttcacttccacacataatcaaattataaccacagccagacaagtctttt
gttactgacagcaaaaatgatatatcagcttccattcaccttatttgtcc
ctgtcctcttatcacatcatcaagacaggagaaagaagtcaccagggcat
ggttgctgaaggaaaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116634688_116635683
seq2: B6Ng01-221O09.b_46_996 (reverse)

seq1  AATAAGA-GATCACTGGATTAGAAAGGAACACAGGTAG-AGATAAAGTTT  48
      | ||||| ||||||| || |||||  | |||||||||| |||||||| ||
seq2  ATTAAGAGGATCACTTGA-TAGAA--GGACACAGGTAGAAGATAAAG-TT  46

seq1  TCTAAGCACACATATTCTCCACCCATAGGATCCTGTGAGTGAAATTCCCT  98
      ||||||||||||||   ||   | ||| ||||||||||||||||| || |
seq2  TCTAAGCACACATA---TCTGACTATA-GATCCTGTGAGTGAAATCCCTT  92

seq1  CTCTCCTCCCATCTCATTAAATGCACGGAAATGTAGTATGGTAAACAGAT  148
      ||    |||||||||||||||||||| |||||||||||| ||||||||| 
seq2  CT---ATCCCATCTCATTAAATGCAC-GAAATGTAGTAT-GTAAACAGA-  136

seq1  TGAGTTGCACAATACATTTGCTTGATTTCTATTTCCTTCTCAATGTGACT  198
      |||||||||||||||| |||||||| |||||||  | |||||||||||| 
seq2  TGAGTTGCACAATACA-TTGCTTGA-TTCTATT--CGTCTCAATGTGAC-  181

seq1  TGTTTTAATTGCTACTTTTTCAGAGTGTTATTCTAGTTCCTCCTGTTCCT  248
      |||||  | ||||||  || |||||||||| ||||| |||||||||| ||
seq2  TGTTT--AATGCTAC-ATTACAGAGTGTTAATCTAG-TCCTCCTGTT-CT  226

seq1  ATTGACTCCTGTTTGTGAGAGTCCCAGGATTTCATCCATGGATACATGGG  298
      | ||||| ||| |||||||||||||||||||||||||||||||||||  |
seq2  A-TGACT-CTG-TTGTGAGAGTCCCAGGATTTCATCCATGGATACAT--G  271

seq1  GTGATGAATTTTCCCTTAAGACTCACTGTTGCTCTTCTTTCTTCAGCTGC  348
      ||||||||  || ||||||||||||||||||||||||  |||||||||||
seq2  GTGATGAA--TTACCTTAAGACTCACTGTTGCTCTTC--TCTTCAGCTGC  317

seq1  TCTGGTCCAGTTACAGCCTCATGAATACAACAAACACTCTGATCTCTCCT  398
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TCTGGTCCAGTTACAGCCTCATG-ATACAAC-AACACTCTGATCTCTCCT  365

seq1  GTTTACACCTTACTACAAATGGGAACTGCCAGAGATTGATCCAATTGCCA  448
      |  |||||  ||||||||   ||||||||||||||||||| ||||   ||
seq2  G--TACAC--TACTACAA--TGGAACTGCCAGAGATTGAT-CAAT--GCA  406

seq1  TGAGGAAAGAACATGACTTTGAGAGGATCATTGATGATAATGTAGAAACA  498
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAGG-AAGAACATGAC-TTGAGAGGATCATTGATGATAATGTAGAAACA  454

seq1  AATACCATCGATCTTCTATCAGTAAACAAGAGCAATTTCTCCATACAGCT  548
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATACCATCGATCTTCTATCAGTAAACAAGAGCAA-TTCTCCATACAGCT  503

seq1  AAGCCCCGCCAACACTGGAGTTGCAAGAATATGTTACTGCTCCAGACAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCGCCAACACTGGAGTTGCAAGAATATGTTACTGCTCCAGACAGA  553

seq1  TTGGGCAAACTCAAGTAAAACCACAACATGTCTACCTGCAGGGCTGGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAAACTCAAGTAAAACCACAACATGTCTACCTGCAGGGCTGGAGA  603

seq1  GATGGCTCAGTGGTTAAGATCACTGACTGTTCTTCCAGAGGTCTTGAGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGTGGTTAAGATCACTGACTGTTCTTCCAGAGGTCTTGAGTT  653

seq1  AAATTCCTAGGAACCACGTGGTGGCTCACAGCCCATCTATAGTGGGGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTAGGAACCACGTGGTGGCTCACAGCCCATCTATAGTGGGGTCT  703

seq1  GGTATCCTATTCTGGTGTTTCTAAAGAGAGCAATAGTGTCCTCATATACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCTATTCTGGTGTTTCTAAAGAGAGCAATAGTGTCCTCATATACA  753

seq1  TTAAATAAATAAATAGATAGGTAGATAGATAGATAGATGATAGATAGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAATAAATAGATAGGTAGATAGATAGATAGATGATAGATAGATA  803

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  853

seq1  TAGATAGATATTTCTTTAAAAAAATTATTGCTTATAAAATGAAATCTACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATATTTCTTTAAAAAAATTATTGCTTATAAAATGAAATCTACC  903

seq1  CCAAGGTGAGTTGAGGACCAGCAGTGGTTAAAATGGGGCTAAGAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTGAGTTGAGGACCAGCAGTGGTTAAAATGGGGCTAAGAATTC  951

seq1: chr12_116488999_116489958
seq2: B6Ng01-221O09.g_69_1038

seq1  GAATTCCTATTCCCTACAAATCCCTCAATTCTTCTCCCAACACTTCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCCCTACAAATCCCTCAATTCTTCTCCCAACACTTCCATA  50

seq1  AGACACCCATAGTTCCATCCAATGTGTGGTTTTGGGTCTTTCTGCAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCATAGTTCCATCCAATGTGTGGTTTTGGGTCTTTCTGCAATTG  100

seq1  ATTCAGTCAGCTGCTGGATAGTAATTGAAAGAGATAAAGAGACGGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCAGCTGCTGGATAGTAATTGAAAGAGATAAAGAGACGGAAAAT  150

seq1  GATTCTTATTTTTATATTTTAGTTTGTGTTTGATTGAAGTGTGAGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTATTTTTATATTTTAGTTTGTGTTTGATTGAAGTGTGAGAGAAA  200

seq1  GAAAGGGTACTGAATTTTTCCTGCCTATAAGAAATGCCGGTACGAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTACTGAATTTTTCCTGCCTATAAGAAATGCCGGTACGAAGACA  250

seq1  GAGCAGAGACTGTGGGAATGGCCAACCAAATGGCCAAAGTTGAGACCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGACTGTGGGAATGGCCAACCAAATGGCCAAAGTTGAGACCCAT  300

seq1  CTCATGGGAAAGCAACAATCTCTGACACTATTAATGACACCCTATTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGGAAAGCAACAATCTCTGACACTATTAATGACACCCTATTATGC  350

seq1  CTGCAGATATGTGCTTCTCATAACTATCCTCTGAGAGTCTCTACCTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATATGTGCTTCTCATAACTATCCTCTGAGAGTCTCTACCTAGGG  400

seq1  CATGAAGTTAGGTTGGTATCAAAGGAATGATGATCTATGAGGAGTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTTAGGTTGGTATCAAAGGAATGATGATCTATGAGGAGTTGGGG  450

seq1  AAAAGAAAAATGTCCTCTGAATGTACTGTTTATATTATTTTTCAATAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATGTCCTCTGAATGTACTGTTTATATTATTTTTCAATAAAC  500

seq1  AAAGGTAATTTAAACTGAACAAACTGGGATCAAAAGCCCTAAATCTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAATTTAAACTGAACAAACTGGGATCAAAAGCCCTAAATCTTGTG  550

seq1  TACTTCTGATTTTTCTATAAATTAGAACATCATGGAAAGACAAATATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGATTTTTCTATAAATTAGAACATCATGGAAAGACAAATATGTT  600

seq1  CATTTATTTCTGGAATGCTCATGCAGAACTTGGTTGTTCAGTTTCCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTCTGGAATGCTCATGCAGAACTTGGTTGTTCAGTTTCCAGTA  650

seq1  ATTTCTGGTCAGTTTCCTGTTACTCTATTGACCCTTCTC-TTATAATTTC  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTCTGGTCAGTTTCCTGTTACTCTATTGACCCTTCTCTTTATAATTTC  700

seq1  TCTCTTCCTGCACTGCAAATAATAAAGTAAGAGTCTGTGGAGAACATTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTGCACTGCAAATAATAAAGTAAGAGTCTGTGGAGAACATTAC  750

seq1  ATGATTTGCTGCTCAGACATTTTCTGAGACATTTACAGAGTTAGAGCAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGCTGCTCAGACATTTTCTGAGACATTTACAGAGTTAGAGCAAT  800

seq1  GTTCACTTCCACACATAATCAAA-TATAACCACAGCCAGACAAGTC-TAT  847
      ||||||||||||||||||||||| |||||||||||||||||||||| | |
seq2  GTTCACTTCCACACATAATCAAATTATAACCACAGCCAGACAAGTCTTTT  850

seq1  GTTACTGACAGCAAAAATGATATATCAGCTTCCA-TCACCTTATTGGTCC  896
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  GTTACTGACAGCAAAAATGATATATCAGCTTCCATTCACCTTATTTGTCC  900

seq1  CTGTCCTC-TATCACATCATCAAGACAGGAG-AAGAAGTCACCA-GGCA-  942
      |||||||| |||||||||||||||||||||| |||||||||||| |||| 
seq2  CTGTCCTCTTATCACATCATCAAGACAGGAGAAAGAAGTCACCAGGGCAT  950

seq1  -GGTGCTG-AGGAAAAAGCA  960
       | ||||| |||||||||||
seq2  GGTTGCTGAAGGAAAAAGCA  970