BAC Information

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BAC

Clone NameB6Ng01-222F01
Chromosome12 (Build37)
Map Location 71,661,880 - 71,802,837
singlet/doubletdoublet
Overlap geneLOC100041061
Upstream geneGm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965
Downstream geneFrmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222F01.bB6Ng01-222F01.g
ACCGA037368GA037369
length445930
definitionB6Ng01-222F01.b B6Ng01-222F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,802,387 - 71,802,837)(71,661,880 - 71,662,808)
sequence
aatgtccctcctcctcctgagcaccatttcttgtctcctccaccttgtcc
ttcctgtgaggtattgctaaacaccttgtcctggggcactgtcccatagg
aagatgacagagttcacaggagagcaacttagcaagcactgatttaagtc
ttagagatagaaaggtaagccacagaattgatgtcctcaaagccttatgg
ttggaggagaggctacacagctggggatacagggtctggacactaagatg
agttcctgtgtggaaacagaggggacaagataggaccaagagtgggacca
aagtcaggatagtgtgaaagtggcttttcatttacttgcaaatggctttt
gtgcgtaatcccttggtacagacaccagggcaaggtttcagtgagagatc
agtttggcaggtaaagaaaacactgttcgggggtgggggtggggg
gaattccagtaaacaacgaagggcatgtatgcacttgtgtgtctatgagg
attgggcctgtgctttctcttggtgggaagtctgggaggctggccccatt
tcaacctccagctcgttcttttatgaagataatgatgatcacagtcattc
tcttgttgtccctgtgagcacactgaggcagtcagcctgggtgctctcaa
atccctgtgcctttcatttgaaaaggacgtgcaagggcacacaggcttga
ctaagagaatcataaaagaagaggttttgaatttaattaaataaaatcta
ataatcatatagttggttttgcttgcatagtgcattgcagcatgcaagac
ttctgcatgaactgtgccatgtggtgcttagacgctgggcctgctaacct
gagcacattgtcttaaagcagtctttcttcagctaccattaatgtgaaag
agaagttgactcctcttacagaagccgtcccatgttcctgcttcttatcg
ttcctaatctagtgctcctccaaaccccttctacttcttttatagcctat
tatttcagccaaaattaggattcacggtcatacttgttaattcccttcat
gaagaggtgcattgttattgatctgtgcagaacattcttcagtctggaca
tgcaagtagccagctttcagtgtaagggcaaagtgtgggtgggctggctt
ttcttctgagaagcagcccgtgtctccagcagaacctcccgaccacacac
acacacacacacgcatgcacacacacgcatgaacacacacacacacacac
acacgcatacataatgattatttggtgatgtttttcggaaagtcaaaatg
gactattaaattatggtatcttcatagcagacaacttcttaactaaaatg
ggaggactttctttaactaaaattggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_71802387_71802837
seq2: B6Ng01-222F01.b_46_496 (reverse)

seq1  CCCCCACCCCCACCCCCGAACAGTGTTTTCTTTACCTGCCAAACTGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCACCCCCGAACAGTGTTTTCTTTACCTGCCAAACTGATCT  50

seq1  CTCACTGAAACCTTGCCCTGGTGTCTGTACCAAGGGATTACGCACAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAAACCTTGCCCTGGTGTCTGTACCAAGGGATTACGCACAAAAG  100

seq1  CCATTTGCAAGTAAATGAAAAGCCACTTTCACACTATCCTGACTTTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCAAGTAAATGAAAAGCCACTTTCACACTATCCTGACTTTGGTC  150

seq1  CCACTCTTGGTCCTATCTTGTCCCCTCTGTTTCCACACAGGAACTCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTGGTCCTATCTTGTCCCCTCTGTTTCCACACAGGAACTCATCT  200

seq1  TAGTGTCCAGACCCTGTATCCCCAGCTGTGTAGCCTCTCCTCCAACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCCAGACCCTGTATCCCCAGCTGTGTAGCCTCTCCTCCAACCATA  250

seq1  AGGCTTTGAGGACATCAATTCTGTGGCTTACCTTTCTATCTCTAAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGAGGACATCAATTCTGTGGCTTACCTTTCTATCTCTAAGACTT  300

seq1  AAATCAGTGCTTGCTAAGTTGCTCTCCTGTGAACTCTGTCATCTTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTGCTTGCTAAGTTGCTCTCCTGTGAACTCTGTCATCTTCCTAT  350

seq1  GGGACAGTGCCCCAGGACAAGGTGTTTAGCAATACCTCACAGGAAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTGCCCCAGGACAAGGTGTTTAGCAATACCTCACAGGAAGGACA  400

seq1  AGGTGGAGGAGACAAGAAATGGTGCTCAGGAGGAGGAGGGACATTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGAGACAAGAAATGGTGCTCAGGAGGAGGAGGGACATTGAATT  450

seq1  C  451
      |
seq2  C  451

seq1: chr12_71661880_71662808
seq2: B6Ng01-222F01.g_69_998

seq1  GAATTCCAGTAAACAACGAAGGGCATGTATGCACTTGTGTGTCTATGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAAACAACGAAGGGCATGTATGCACTTGTGTGTCTATGAGG  50

seq1  ATTGGGCCTGTGCTTTCTCTTGGTGGGAAGTCTGGGAGGCTGGCCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCCTGTGCTTTCTCTTGGTGGGAAGTCTGGGAGGCTGGCCCCATT  100

seq1  TCAACCTCCAGCTCGTTCTTTTATGAAGATAATGATGATCACAGTCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTCCAGCTCGTTCTTTTATGAAGATAATGATGATCACAGTCATTC  150

seq1  TCTTGTTGTCCCTGTGAGCACACTGAGGCAGTCAGCCTGGGTGCTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGTCCCTGTGAGCACACTGAGGCAGTCAGCCTGGGTGCTCTCAA  200

seq1  ATCCCTGTGCCTTTCATTTGAAAAGGACGTGCAAGGGCACACAGGCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTGCCTTTCATTTGAAAAGGACGTGCAAGGGCACACAGGCTTGA  250

seq1  CTAAGAGAATCATAAAAGAAGAGGTTTTGAATTTAATTAAATAAAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAATCATAAAAGAAGAGGTTTTGAATTTAATTAAATAAAATCTA  300

seq1  ATAATCATATAGTTGGTTTTGCTTGCATAGTGCATTGCAGCATGCAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATATAGTTGGTTTTGCTTGCATAGTGCATTGCAGCATGCAAGAC  350

seq1  TTCTGCATGAACTGTGCCATGTGGTGCTTAGACGCTGGGCCTGCTAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATGAACTGTGCCATGTGGTGCTTAGACGCTGGGCCTGCTAACCT  400

seq1  GAGCACATTGTCTTAAAGCAGTCTTTCTTCAGCTACCATTAATGTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATTGTCTTAAAGCAGTCTTTCTTCAGCTACCATTAATGTGAAAG  450

seq1  AGAAGTTGACTCCTCTTACAGAAGCCGTCCCATGTTCCTGCTTCTTATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGACTCCTCTTACAGAAGCCGTCCCATGTTCCTGCTTCTTATCG  500

seq1  TTCCTAATCTAGTGCTCCTCCAAACCCCTTCTACTTCTTTTATAGCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATCTAGTGCTCCTCCAAACCCCTTCTACTTCTTTTATAGCCTAT  550

seq1  TATTTCAGCCAAAATTAGGATTCACGGTCATACTTGTTAATTCCCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGCCAAAATTAGGATTCACGGTCATACTTGTTAATTCCCTTCAT  600

seq1  GAAGAGGTGCATTGTTATTGATCTGTGCAGAACATTCTTCAGTCTGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGCATTGTTATTGATCTGTGCAGAACATTCTTCAGTCTGGACA  650

seq1  TGCAAGTAGCCAGCTTTCAGTGTAAGGGCAAAGTGTGGGTGGGCTGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTAGCCAGCTTTCAGTGTAAGGGCAAAGTGTGGGTGGGCTGGCTT  700

seq1  TTCTTCTGAGAAGCAGCCCGTGTCTCCAGCAGAACCTCCCGACCACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGAGAAGCAGCCCGTGTCTCCAGCAGAACCTCCCGACCACACAC  750

seq1  ACACACACACACGCATGCACACACACGCATGAACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACGCATGCACACACACGCATGAACACACACACACACACAC  800

seq1  ACACGCATACATAATGATTATTTGGTGATGTTTTTCGGAAAGTCAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCATACATAATGATTATTTGGTGATGTTTTTCGGAAAGTCAAAATG  850

seq1  GACTATTAAA-TATGGTATCTTCATAGCAGAC-ACTTCTTAACTAAAATG  898
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  GACTATTAAATTATGGTATCTTCATAGCAGACAACTTCTTAACTAAAATG  900

seq1  GGAGGACTT--CTTAACTAAAATGGGAGGAAGG  929
      |||||||||   |||||||||||    ||||||
seq2  GGAGGACTTTCTTTAACTAAAAT---TGGAAGG  930