BAC Information

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BAC

Clone NameB6Ng01-222J17
Chromosome12 (Build37)
Map Location 41,262,162 - 41,263,221
singlet/doubletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222J17.bB6Ng01-222J17.g
ACCGA037580GA037581
length1,0741,105
definitionB6Ng01-222J17.b B6Ng01-222J17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaatcataatccctaaacgtggagataaaacagaaaatcaga
acaagactggggggaaaaaatcaaggttcaggaggagtggaaagcgaaca
ggaactggagctcacaggagaaagctaaccacacttgcagagtcccctcc
cctcttctggctaggcccagtctcctaaaacccagaggaaaaccacagtc
tggtttcctgggcggggcagaaaccctattcactcagaggaaccagaact
acagtgtatttcatgtgtccatgaaaaggctcagacttgagatagtgagg
gctgaggaaagatgatacgcatagaaaatttcagagttacgtgtcacact
tggagcatcaaaggaaggcagaaaagacagaaaggcagatgtctatatgt
cacttggagacacacggacagaaagctgggaatgggtggtgtgggctcct
atccagagaagctgcttaccctgtaggctcagtgtgctttcatctagagc
tgaacaggaaggcagggtgattgtacacagctggataaggaggcagggtt
actgaagtcagagaaaggagaaggcagagtttatggtagagcaaggagac
aggtttagtgaacctccataggatcagtctctttaggggaacagtctgca
aaagctgtcagtgcgctcatttggtcccctgagtgaagttcaccatccct
ctgagtctcatggggtggggtgaagcatggctgggacaggggctttgcca
ttcctttggggttcttgacatggctgtgcccctggcaactgcgcacacat
attcatggacttcacccagttcagagctttcctccagcccctagagtcac
aaaaccacaagtgttcaagaacattcttgaaccttttttttttctgagac
cctatcctgtacatcagatacacagagaattgatctgttagtagaaagcc
cacctcatcggcaccagaaagtctatctataactgacccctccccaggac
tcgtacattacactatccttcacctcccatgatttctcccttgactgact
acagtgtgtccacagggtctctgc
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgcagcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaggatggtgccgccccagaatctctgcgactctc
tcgcccgtcccagaaacggctggcactctgtattccacacggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccggcgc
ctgtgccacaaacctctcaggccaggcagaccccgtgctctcaccaggaa
ggtggccggctgtctggagctaaagatggcgccgcccagaagctctgcga
ctctctcgcccgtcccagaaacagctggcactctgtattcccacacggtc
acccgtgcagcctgccctccgcggagtcccggagccaagaaggctcccgc
cggcgcctgtgccacaaacctctcagccaggcagacccccgtgctctcac
cagaaggtgacagctgttctggagctgatgatgagctgcccaaaacctcc
tgctactcttctcgcccgtcctaaacagctggcacttcttgtattccaca
cggtcactcgtgcagcttgtcctcccgctgagtcctggagctagagttcc
cgcgcgctgtgtccaagacttctcaggccaggccagatccccgcatgtct
ctacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41262162_41263221
seq2: B6Ng01-222J17.b_46_1119 (reverse)

seq1  GCAGAG--CCTGT-GACACACTGTTGTCAG--CAGGGAGAAGAC-TGGGG  44
      ||||||  ||||| |||||||||| |||||   ||||||||  | |||| 
seq2  GCAGAGACCCTGTGGACACACTGTAGTCAGTCAAGGGAGAAATCATGGGA  50

seq1  AGTGA--GGTAGGGTATTGTA-GAGTCCTGGGGA-GGGTCATTTCTAGAT  90
       ||||  | ||| ||| |||| |||||||||||| |||||| || |||||
seq2  GGTGAAGGATAGTGTAATGTACGAGTCCTGGGGAGGGGTCAGTTATAGAT  100

seq1  -GAATTTCTGCTGCGGGTGAGGT-GGCTTTCTTACT-ACAGATCAATTCT  137
       || |||||| ||| | |||||| ||||||| |||| |||||||||||||
seq2  AGACTTTCTGGTGCCGATGAGGTGGGCTTTC-TACTAACAGATCAATTCT  149

seq1  CTGTTTTATGTTGATGTACAGGATAGGGTCTCAG-AAAAAAAAAGGTTCA  186
      ||| | |||  ||||||||||||||||||||||| |||||||||||||||
seq2  CTG-TGTAT-CTGATGTACAGGATAGGGTCTCAGAAAAAAAAAAGGTTCA  197

seq1  AGAATGTTCTTGAACACTTGTGGTTTTGTGACTCTAGGGGCTGGAGG-AA  235
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAATGTTCTTGAACACTTGTGGTTTTGTGACTCTAGGGGCTGGAGGAAA  247

seq1  GCTCTG-AGTGGGTGAAGTCC-TGAATATGTGTGCGCTGTTGCCAGGGGC  283
      |||||| | |||||||||||| ||||||||||||||| ||||||||||||
seq2  GCTCTGAACTGGGTGAAGTCCATGAATATGTGTGCGCAGTTGCCAGGGGC  297

seq1  ACAGCCATGCCAAGAACCCCAAAGGAATGGCAAAGCCCCTGTCCCAGCCA  333
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATGTCAAGAACCCCAAAGGAATGGCAAAGCCCCTGTCCCAGCCA  347

seq1  TGCTTCACCCCACCCCATGAGACTCAGAGGGATGGTGAACTTCACTCAGG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACCCCACCCCATGAGACTCAGAGGGATGGTGAACTTCACTCAGG  397

seq1  GGACCAAATGAGCGCACTGACAGCTTTTGCAGACTGTTCCCCTAAAGAGA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAATGAGCGCACTGACAGCTTTTGCAGACTGTTCCCCTAAAGAGA  447

seq1  CTGATCCTATGGAGGTTCACTAAACCTGTCTCCTTGCTCTACCATAAACT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTATGGAGGTTCACTAAACCTGTCTCCTTGCTCTACCATAAACT  497

seq1  CTGCCTTCTCCTTTCTCTGACTTCAGTAACCCTGCCTCCTTATCCAGCTG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCTCCTTTCTCTGACTTCAGTAACCCTGCCTCCTTATCCAGCTG  547

seq1  TGTACAATCACCCTGCCTTCCTGTTCAGCTCTAGATGAAAGCACACTGAG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATCACCCTGCCTTCCTGTTCAGCTCTAGATGAAAGCACACTGAG  597

seq1  CCTACAGGGTAAGCAGCTTCTCTGGATAGGAGCCCACACCACCCATTCCC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGGTAAGCAGCTTCTCTGGATAGGAGCCCACACCACCCATTCCC  647

seq1  AGCTTTCTGTCCGTGTGTCTCCAAGTGACATATAGACATCTGCCTTTCTG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGTCCGTGTGTCTCCAAGTGACATATAGACATCTGCCTTTCTG  697

seq1  TCTTTTCTGCCTTCCTTTGATGCTCCAAGTGTGACACGTAACTCTGAAAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGCCTTCCTTTGATGCTCCAAGTGTGACACGTAACTCTGAAAT  747

seq1  TTTCTATGCGTATCATCTTTCCTCAGCCCTCACTATCTCAAGTCTGAGCC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGCGTATCATCTTTCCTCAGCCCTCACTATCTCAAGTCTGAGCC  797

seq1  TTTTCATGGACACATGAAATACACTGTAGTTCTGGTTCCTCTGAGTGAAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGGACACATGAAATACACTGTAGTTCTGGTTCCTCTGAGTGAAT  847

seq1  AGGGTTTCTGCCCCGCCCAGGAAACCAGACTGTGGTTTTCCTCTGGGTTT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTGCCCCGCCCAGGAAACCAGACTGTGGTTTTCCTCTGGGTTT  897

seq1  TAGGAGACTGGGCCTAGCCAGAAGAGGGGAGGGGACTCTGCAAGTGTGGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACTGGGCCTAGCCAGAAGAGGGGAGGGGACTCTGCAAGTGTGGT  947

seq1  TAGCTTTCTCCTGTGAGCTCCAGTTCCTGTTCGCTTTCCACTCCTCCTGA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTCTCCTGTGAGCTCCAGTTCCTGTTCGCTTTCCACTCCTCCTGA  997

seq1  ACCTTGATTTTTTCCCCCCAGTCTTGTTCTGATTTTCTGTTTTATCTCCA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATTTTTTCCCCCCAGTCTTGTTCTGATTTTCTGTTTTATCTCCA  1047

seq1  CGTTTAGGGATTATGATTTGAGAATTC  1060
      |||||||||||||||||||||||||||
seq2  CGTTTAGGGATTATGATTTGAGAATTC  1074