BAC Information

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BAC

Clone NameB6Ng01-223H17
Chromosome12 (Build37)
Map Location 114,093,976 - 114,233,583
singlet/doubletdoublet
Overlap geneGpr132, Jag2, Nudt14, Brf1, Btbd6
Upstream genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4
Downstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223H17.bB6Ng01-223H17.g
ACCGA038213GA038214
length1,0911,159
definitionB6Ng01-223H17.b B6Ng01-223H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,093,976 - 114,095,042)(114,232,432 - 114,233,583)
sequence
gaattcttccgggccttcttcaatgcctcagtcaaacaagattctctcac
ctgctgcattggtaggttctgatctcatggtggctcctatgtgagttctg
tggacccccttgtgaaggtggctctggcagcttaaaatgacctggagaaa
gagcgtgttgaaacggagttaggtgaaaatgcaaacaaaacaaagcaaag
caaagcaaaacaaaacaaaacaaaaagccaatgagaataagccagccagc
taccctcccacctacccccacccacccacccacctatccatccatccatc
catccatccatccatccatccatatatgtatacatacatacatatataca
tgcacacatacatacatacacccatctacccacccaaccatctatccatc
cacacatacatatataatacatacatacatacatacatacatacatccac
ccatccatctatccatccatccatactacatatatacatacacccatcca
cccatccatccacccagtcagccagccaaccaccctcccacctatccatc
catccatccatccatccatccatccatccatccatccatccatccatcca
cccatccatccatccatccatccatccattcacccacccagccagccagc
cagcctgccagccaggtgtgctgttgctatgcccatcatcccagactgac
ttcattcaacaaagagtctagagcactccacagtcaagaaagggtaatgc
agtacagacaagcctggcaccagggagcatcaaagtcatcaccctgcata
ccagagtttaacactgttatttgttggttattgctagccaagctgatggc
acatgatcctccctggaagaattaagagctcccatgaagtcgaagaacga
aaatcatgcatgagaacggtctctttgtttgtttgtcttcctgcctagtc
aggctgaacaagaaataactaaattgattgtttctgaagtcttgaagact
atgtctacccttgaaagctaacaaaaccggggtggtcaacttaacgtaac
catatattttcagaagcccgcacttttggcagtcagtttcc
gaattcaggggacagctcttggaagctggttctctccttccaccttgcag
gtccttggggctcaaactcaggtggtcaggcttcatagcaggtttcttta
gtgttaagccatctcagctgctgtagaatgctttttaaggatgggcctta
ctgtctatctagcccaggctggccttagaatctcttgccttctctatcaa
accagcagttataaaactgtctgctctgggtactctgagaaaatgaagga
cagtgctctggggaggcctttctgggctctgaggtctcttggccctctcc
ctcagtcagatccagcatgtgaaggtggctttgtctgtttcttcccatgt
tgtcttgggctcatctctctgagccctttcagaggctcttccccgagtgg
cctgtggttgtataatccttctccattgtccttgatggactcttaaaagc
ccatctgtgctacacctctagcttgtatttttttgttatagaaacttgta
aaaaaaaaaacaaatgtctgttgggcctagtggtatacatctgtaatccc
agcacttggaaggcaaagttgtaagtcagctggtgctccatagtgaaacc
tgatctggaaggaatgaaggaaaacaaaattcctggtgtcttatctattt
tatgcatatgagaacaccaccactgctctctttggacacaccagaagagg
gcaccagaccccaatacagatggttatgatccatcatgtggttgctggga
attgaactcaggacctctggaagagcagtcagtgctcttagccgctgagc
catctctccagcccaatacctggtgtctttacaggcagaacacatctgaa
atgtgaaggtctaggtgaatttgaggttggcagttccatgtagaggtcat
gcttggcttttcttccttcacacccgagggggagcctgagtcagctggca
cctcatcctgggtgtgacgtttgctgagtaagccaccatgtttcctcctg
ctgctcagatgtggaggggtggccaggggcagtgcagtggagctacccta
gcagaagtgttggggctcccagcacggtagtggcagtggtttggtgactt
tgcagtggtctgtgttgtaacctggtctgaggattgcaaggcttgccaag
taagcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114093976_114095042
seq2: B6Ng01-223H17.b_48_1138

seq1  GAATTCTTCCGGGCCTTCTTCAATGCCTCAGTCAAACAAGATTCTCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCGGGCCTTCTTCAATGCCTCAGTCAAACAAGATTCTCTCAC  50

seq1  CTGCTGCATTGGTAGGTTCTGATCTCATGGTGGCTCCTATGTGAGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCATTGGTAGGTTCTGATCTCATGGTGGCTCCTATGTGAGTTCTG  100

seq1  TGGACCCCCTTGTGAAGGTGGCTCTGGCAGCTTAAAATGACCTGGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCCTTGTGAAGGTGGCTCTGGCAGCTTAAAATGACCTGGAGAAA  150

seq1  GAGCGTGTTGAAACGGAGTTAGGTGAAAATGCAAACAAAACAAAGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTGTTGAAACGGAGTTAGGTGAAAATGCAAACAAAACAAAGCAAAG  200

seq1  CAAAGCAAAACAAAACAAAACAAAAAGCCAATGAGAATAAGCCAGCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAACAAAACAAAACAAAAAGCCAATGAGAATAAGCCAGCCAGC  250

seq1  TACCCTCCCACCTACCCCCACCCACCCACCCACCTATCCATCCATCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCCACCTACCCCCACCCACCCACCCACCTATCCATCCATCCATC  300

seq1  CATCCATCCATCCATCCATCCATATATGTATACATACATACATATATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCATCCATATATGTATACATACATACATATATACA  350

seq1  TGCACACATACATACATACACCCATCTACCCACCCAACCATCTATCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATACATACATACACCCATCTACCCACCCAACCATCTATCCATC  400

seq1  CACACATACATATATAATACATACATACATACATACATACATACATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACATATATAATACATACATACATACATACATACATACATCCAC  450

seq1  CCATCCATCTATCCATCCATCCATACTACATATATACATACACCCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCTATCCATCCATCCATACTACATATATACATACACCCATCCA  500

seq1  CCCATCCATCCACCCAGTCAGCCAGCCAACCACCCTCCCACCTATCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATCCACCCAGTCAGCCAGCCAACCACCCTCCCACCTATCCATC  550

seq1  CATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCA  600

seq1  CCCATCCATCCATCCATCCATCCATCCATTCACCCACCCAGCCAGCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATCCATCCATCCATCCATCCATTCACCCACCCAGCCAGCCAGC  650

seq1  CAGCCTGCCAGCCAGGTGTGCTGTTGCAATGCCCATCATCCCAGACTGAC  700
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGCCTGCCAGCCAGGTGTGCTGTTGCTATGCCCATCATCCCAGACTGAC  700

seq1  -TCATTCAACAAAGAGTCTAGAGCACCCCACAGTCAACAAA-GGTAATGC  748
       ||||||||||||||||||||||||| |||||||||| ||| ||||||||
seq2  TTCATTCAACAAAGAGTCTAGAGCACTCCACAGTCAAGAAAGGGTAATGC  750

seq1  AGTACAGACAA-CCAGGCACCAGGGAGCATCAAAG-CATCACCCTGGATA  796
      ||||||||||| || |||||||||||||||||||| |||||||||| |||
seq2  AGTACAGACAAGCCTGGCACCAGGGAGCATCAAAGTCATCACCCTGCATA  800

seq1  CCAGAG-TTAAAACTGTTATTTGTTGGTTATGGTTGGCAAAGCTGATGGC  845
      |||||| |||| ||||||||||||||||||| | | || |||||||||||
seq2  CCAGAGTTTAACACTGTTATTTGTTGGTTATTGCTAGCCAAGCTGATGGC  850

seq1  ACATGAGCTCCCACAGAAGAATTAAGAGCTCCCA-AAAGGCGAAGAAACG  894
      |||||| |  ||   |||||||||||||||||||  ||| ||||| ||||
seq2  ACATGATCCTCCCTGGAAGAATTAAGAGCTCCCATGAAGTCGAAG-AACG  899

seq1  CAAAATCA-GCATGAAGAACGGTCTCTTTGTTTTGTTTTGTTTTCCTGCC  943
       ||||||| ||||| ||||||||||||||||||   ||||| ||||||||
seq2  -AAAATCATGCATG-AGAACGGTCTCTTTGTTT--GTTTGTCTTCCTGCC  945

seq1  TA-TCAGGCTG-ACAA-AAATAACTAAA-TCAGTG-TTCTGAAGTC-TGA  987
      || |||||||| |||| ||||||||||| | | || |||||||||| |||
seq2  TAGTCAGGCTGAACAAGAAATAACTAAATTGATTGTTTCTGAAGTCTTGA  995

seq1  AGAC-ATGGC-ACCCT--GAAGCT-ACACAA-CGGGGTGGTC-ACT--AG  1028
      |||| ||| | |||||   ||||| ||| || |||||||||| |||  | 
seq2  AGACTATGTCTACCCTTGAAAGCTAACAAAACCGGGGTGGTCAACTTAAC  1045

seq1  GTACCAATA---TTTCAG-AGCCC-CACTTT--GCAGTCAGTTTCC  1067
      ||| | |||   |||||| ||||| ||||||  |||||||||||||
seq2  GTAACCATATATTTTCAGAAGCCCGCACTTTTGGCAGTCAGTTTCC  1091

seq1: chr12_114232432_114233583
seq2: B6Ng01-223H17.g_65_1223 (reverse)

seq1  GGAAGCTTACT--GCAACCTTTGCACTCCTCAGCTCCAGGT--CCACACA  46
      |||||||||||  |||| | ||||| |||||||  ||||||  | |||||
seq2  GGAAGCTTACTTGGCAAGCCTTGCAATCCTCAG-ACCAGGTTACAACACA  49

seq1  GCCCACTGCAAAGTCACC-AACCACTGCCACTTCCCGTGCTGGGAGCCCC  95
      | |||||||||||||||| |||||||||||| | ||||||||||||||||
seq2  GACCACTGCAAAGTCACCAAACCACTGCCAC-TACCGTGCTGGGAGCCCC  98

seq1  -ACACTTCTGCTTGGGTAGCTCCACCTGCACTGCCCCT-GCCACCCCTCC  143
       ||||||||||| ||||||||||| ||||||||||||| |||||||||||
seq2  AACACTTCTGCTAGGGTAGCTCCA-CTGCACTGCCCCTGGCCACCCCTCC  147

seq1  ACATCTGAGCAGCAGGAGGAAACATGGT-GCTTACTCAGCAAACGTCACA  192
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACATCTGAGCAGCAGGAGGAAACATGGTGGCTTACTCAGCAAACGTCACA  197

seq1  -CCAGGATGAGGTGCCAGCTGACTCAGGCT-CCCCTCGGGTGTGAAGGAA  240
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCAGGATGAGGTGCCAGCTGACTCAGGCTCCCCCTCGGGTGTGAAGGAA  247

seq1  GAAAAGCCAAGCATGACCTCTACATGGAACTGCCAACCTCAAATTCACCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCAAGCATGACCTCTACATGGAACTGCCAACCTCAAATTCACCT  297

seq1  AGACCTTCACATTTCAGATGTGTTCTGCCTGTAAAGACACCAGGTATTGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCACATTTCAGATGTGTTCTGCCTGTAAAGACACCAGGTATTGG  347

seq1  GCTGGAGAGATGGCTCAGCGGCTAAGAGCACTGACTGCTCTTCCAGAGGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATGGCTCAGCGGCTAAGAGCACTGACTGCTCTTCCAGAGGT  397

seq1  CCTGAGTTCAATTCCCAGCAACCACATGATGGATCATAACCATCTGTATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAATTCCCAGCAACCACATGATGGATCATAACCATCTGTATT  447

seq1  GGGGTCTGGTGCCCTCTTCTGGTGTGTCCAAAGAGAGCAGTGGTGGTGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTGGTGCCCTCTTCTGGTGTGTCCAAAGAGAGCAGTGGTGGTGTT  497

seq1  CTCATATGCATAAAATAGATAAGACACCAGGAATTTTGTTTTCCTTCATT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGCATAAAATAGATAAGACACCAGGAATTTTGTTTTCCTTCATT  547

seq1  CCTTCCAGATCAGGTTTCACTATGGAGCACCAGCTGACTTACAACTTTGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGATCAGGTTTCACTATGGAGCACCAGCTGACTTACAACTTTGC  597

seq1  CTTCCAAGTGCTGGGATTACAGATGTATACCACTAGGCCCAACAGACATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGTGCTGGGATTACAGATGTATACCACTAGGCCCAACAGACATT  647

seq1  TGTTTTTTTTTTTACAAGTTTCTATAACAAAAAAATACAAGCTAGAGGTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTTTACAAGTTTCTATAACAAAAAAATACAAGCTAGAGGTG  697

seq1  TAGCACAGATGGGCTTTTAAGAGTCCATCAAGGACAATGGAGAAGGATTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGATGGGCTTTTAAGAGTCCATCAAGGACAATGGAGAAGGATTA  747

seq1  TACAACCACAGGCCACTCGGGGAAGAGCCTCTGAAAGGGCTCAGAGAGAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCACAGGCCACTCGGGGAAGAGCCTCTGAAAGGGCTCAGAGAGAT  797

seq1  GAGCCCAAGACAACATGGGAAGAAACAGACAAAGCCACCTTCACATGCTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAAGACAACATGGGAAGAAACAGACAAAGCCACCTTCACATGCTG  847

seq1  GATCTGACTGAGGGAGAGGGCCAAGAGACCTCAGAGCCCAGAAAGGCCTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACTGAGGGAGAGGGCCAAGAGACCTCAGAGCCCAGAAAGGCCTC  897

seq1  CCCAGAGCACTGTCCTTCATTTTCTCAGAGTACCCAGAGCAGACAGTTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCACTGTCCTTCATTTTCTCAGAGTACCCAGAGCAGACAGTTTT  947

seq1  ATAACTGCTGGTTTGATAGAGAAGGCAAGAGATTCTAAGGCCAGCCTGGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCTGGTTTGATAGAGAAGGCAAGAGATTCTAAGGCCAGCCTGGG  997

seq1  CTAGATAGACAGTAAGGCCCATCCTTAAAAAGCATTCTACAGCAGCTGAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAGACAGTAAGGCCCATCCTTAAAAAGCATTCTACAGCAGCTGAG  1047

seq1  ATGGCTTAACACTAAAGAAACCTGCTATGAAGCCTGACCACCTGAGTTTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTAACACTAAAGAAACCTGCTATGAAGCCTGACCACCTGAGTTTG  1097

seq1  AGCCCCAAGGACCTGCAAGGTGGAAGGAGAGAACCAGCTTCCAAGAGCTG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAAGGACCTGCAAGGTGGAAGGAGAGAACCAGCTTCCAAGAGCTG  1147

seq1  TCCCCTGAATTC  1152
      ||||||||||||
seq2  TCCCCTGAATTC  1159