BAC Information

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BAC

Clone NameB6Ng01-223K01
Chromosome12 (Build37)
Map Location 68,974,597 - 69,060,613
singlet/doubletdoublet
Overlap genenone
Upstream geneMdga2, LOC100040745
Downstream geneLOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223K01.bB6Ng01-223K01.g
ACCGA038319GA038320
length1,082846
definitionB6Ng01-223K01.b B6Ng01-223K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,059,536 - 69,060,613)(68,974,597 - 68,975,437)
sequence
gaattcaatagtatttattatatatttgtatatttatattaattattttg
aattaaacacaaacttcaaaatattttatcataattaaatattgtggact
ataaaatacataatatcttcatcagggtttctattcttgcacaaaacatc
atgatctagaagcaagttggggaggaaagggtttattcagctcacgtttt
tacattgctgtttatcactaaaggaagtctggactggaactcaagcaggt
caggaagcaggagttgatgcagagaccatggagagatgttacttactggc
ttgcttcccctaccttgttcagcttgctttcttatagaacccaggacaag
caacccaagaatggcatcacccacaatgggccctctcctcttgatcacta
attcagaaaatgcctttcagctggatttcatggagtcatttccacaattg
aggctcctttctctgttaattccagcttgtgtcaagttgacacacaaaac
cagccagtgcatctaattattgttttatcctcttattgtttaatataatt
accatcctatgtgctcatatatagacttaagtattgcatttctgattttt
caaataagatatattaatttatagaaataaataccaatattgtaacttca
tcaatatacttggtagaatgttcaaaaataacccctggtataaaaataat
tacaaaagaaagtcttataaagataaaaaaaaacaatattaaatgaaccg
catacttaaaattataaaaagtaattagaagtattgtaaattttatgaat
ggaaggtctgtcttaattttatagaagaaatcagtggaaaatatagacag
aaacaaatcttagaaaaattttgtaaaaatttggtagcataaaataaaga
acaactttctcaagtagttatttgttctacaaccagaatctatgacagac
agaatttaaaatatggatttaatcaacaggggtcattatactatctatac
acctgtcaagcatatcacctatagcccaatgtatatgtagaatacatccc
taattccattcaatgaaatggagacaaaactg

gaattctattggtaaaggtaggaaggttagtgtaaattaaaagcctgatc
taaaaggaaatttcagccaggaatgccgaagaaaaccctgtcacagaaca
aaacaaaacattaaaacttcataattttatacaactgcccatcataatta
gaaatttttaaatagttcacataagatttctttgctacttgtcatcaact
cagaataattaaatataggttcatataaaagtgttgatgtctttagcaat
gctttaatgtaactggactgtctattactgaagttatttatatgtgcaaa
atatttagctttcaaccatgtgtgaagacatggtatgattgcatgcacta
tgagatttttaaattagctttatgctattcttcaagatttataatgtagc
agcccataaacattaatgatctatgggaaaatcaattttattctttttat
tattattacgtattttcctcaattacatttccaatgctatcccaaaagtc
ccccataccctccccccacttcccaacccacccatttttttttttttttt
tggccctggcattcccctgtagtggggcatataacgtttgtgtgtccaac
ggggctctctttccattgatggccaagtaggccctcttttgatacatatg
cagctagagtccagagctccggggtactggttaataataataataatgtt
gttataataatgttaaatgtgctgatgttgatttttgtgattgttacctt
ggggaacttaagttaaagattctggaatgtgtctttgtgatgcataaatg
ggttgtttttgctgatacaaactcacatggttgtttttatctgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_69059536_69060613
seq2: B6Ng01-223K01.b_46_1127 (reverse)

seq1  CAGTTTTGT---CATTTTATTTAAATTGATATA-GGATGTA-TCTACATA  45
      |||||||||   ||||| | || ||| ||  || ||||||| ||||||||
seq2  CAGTTTTGTCTCCATTTCA-TTGAATGGAATTAGGGATGTATTCTACATA  49

seq1  TACA-TGGGCTATA-GTGATATGCTTTGACAGGTGTATAGATAGTATAAT  93
      |||| ||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TACATTGGGCTATAGGTGATATGC-TTGACAGGTGTATAGATAGTATAAT  98

seq1  GACCCCTGTTTGATTAAAATCCATATTTTAAATTCTGTCTGTCATAGATT  143
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  GACCCCTG-TTGATT-AAATCCATATTTTAAATTCTGTCTGTCATAGATT  146

seq1  CTGGTTGTAGAACAAATAACTACTTGAGAAAGTTGTTCTTTATTTTATGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGTAGAACAAATAACTACTTGAGAAAGTTGTTCTTTATTTTATGC  196

seq1  TACC-AATTTTTACAAAATTTTTCTAAGATTTGTTTCTGTCTATATTTTC  242
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAATTTTTACAAAATTTTTCTAAGATTTGTTTCTGTCTATATTTTC  246

seq1  CACTGATTTCTTCTATAAAATTAAGACAGACCTTCCATTCATAAAATTTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTTCTTCTATAAAATTAAGACAGACCTTCCATTCATAAAATTTA  296

seq1  CAATACTTCTAATTACTTTTTATAATTTTAAGTATGCGGTTCATTTAATA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTCTAATTACTTTTTATAATTTTAAGTATGCGGTTCATTTAATA  346

seq1  TTGTTTTTTTTTATCTTTATAAGACTTTCTTTTGTAATTATTTTTATACC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTTATCTTTATAAGACTTTCTTTTGTAATTATTTTTATACC  396

seq1  AGGGGTTATTTTTGAACATTCTACCAAGTATATTGATGAAGTTACAATAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTATTTTTGAACATTCTACCAAGTATATTGATGAAGTTACAATAT  446

seq1  TGGTATTTATTTCTATAAATTAATATATCTTATTTGAAAAATCAGAAATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTATTTCTATAAATTAATATATCTTATTTGAAAAATCAGAAATG  496

seq1  CAATACTTAAGTCTATATATGAGCACATAGGATGGTAATTATATTAAACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTAAGTCTATATATGAGCACATAGGATGGTAATTATATTAAACA  546

seq1  ATAAGAGGATAAAACAATAATTAGATGCACTGGCTGGTTTTGTGTGTCAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGATAAAACAATAATTAGATGCACTGGCTGGTTTTGTGTGTCAA  596

seq1  CTTGACACAAGCTGGAATTAACAGAGAAAGGAGCCTCAATTGTGGAAATG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACAAGCTGGAATTAACAGAGAAAGGAGCCTCAATTGTGGAAATG  646

seq1  ACTCCATGAAATCCAGCTGAAAGGCATTTTCTGAATTAGTGATCAAGAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGAAATCCAGCTGAAAGGCATTTTCTGAATTAGTGATCAAGAGG  696

seq1  AGAGGGCCCATTGTGGGTGATGCCATTCTTGGGTTGCTTGTCCTGGGTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCCCATTGTGGGTGATGCCATTCTTGGGTTGCTTGTCCTGGGTTC  746

seq1  TATAAGAAAGCAAGCTGAACAAGGTAGGGGAAGCAAGCCAGTAAGTAACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAAGCAAGCTGAACAAGGTAGGGGAAGCAAGCCAGTAAGTAACA  796

seq1  TCTCTCCATGGTCTCTGCATCAACTCCTGCTTCCTGACCTGCTTGAGTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATGGTCTCTGCATCAACTCCTGCTTCCTGACCTGCTTGAGTTC  846

seq1  CAGTCCAGACTTCCTTTAGTGATAAACAGCAATGTAAAAACGTGAGCTGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGACTTCCTTTAGTGATAAACAGCAATGTAAAAACGTGAGCTGA  896

seq1  ATAAACCCTTTCCTCCCCAACTTGCTTCTAGATCATGATGTTTTGTGCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCTTTCCTCCCCAACTTGCTTCTAGATCATGATGTTTTGTGCAA  946

seq1  GAATAGAAACCCTGATGAAGATATTATGTATTTTATAGTCCACAATATTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAAACCCTGATGAAGATATTATGTATTTTATAGTCCACAATATTT  996

seq1  AATTATGATAAAATATTTTGAAGTTTGTGTTTAATTCAAAATAATTAATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGATAAAATATTTTGAAGTTTGTGTTTAATTCAAAATAATTAATA  1046

seq1  TAAATATACAAATATATAATAAATACTATTGAATTC  1078
      ||||||||||||||||||||||||||||||||||||
seq2  TAAATATACAAATATATAATAAATACTATTGAATTC  1082


seq1: chr12_68974597_68975437
seq2: B6Ng01-223K01.g_68_913

seq1  GAATTCTATTGGTAAAGGTAGGAAGGTTAGTGTAAATTAAAAGCCTGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGGTAAAGGTAGGAAGGTTAGTGTAAATTAAAAGCCTGATC  50

seq1  TAAAAGGAAATTTCAGCCAGGAATGCCGAAGAAAACCCTGTCACAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAAATTTCAGCCAGGAATGCCGAAGAAAACCCTGTCACAGAACA  100

seq1  AAACAAAACATTAAAACTTCATAATTTTATACAACTGCCCATCATAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACATTAAAACTTCATAATTTTATACAACTGCCCATCATAATTA  150

seq1  GAAATTTTTAAATAGTTCACATAAGATTTCTTTGCTACTTGTCATCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTAAATAGTTCACATAAGATTTCTTTGCTACTTGTCATCAACT  200

seq1  CAGAATAATTAAATATAGGTTCATATAAAAGTGTTGATGTCTTTAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAATTAAATATAGGTTCATATAAAAGTGTTGATGTCTTTAGCAAT  250

seq1  GCTTTAATGTAACTGGACTGTCTATTACTGAAGTTATTTATATGTGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATGTAACTGGACTGTCTATTACTGAAGTTATTTATATGTGCAAA  300

seq1  ATATTTAGCTTTCAACCATGTGTGAAGACATGGTATGATTGCATGCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGCTTTCAACCATGTGTGAAGACATGGTATGATTGCATGCACTA  350

seq1  TGAGATTTTTAAATTAGCTTTATGCTATTCTTCAAGATTTATAATGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTTAAATTAGCTTTATGCTATTCTTCAAGATTTATAATGTAGC  400

seq1  AGCCCATAAACATTAATGATCTATGGGAAAATCAATTTTATTCTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATAAACATTAATGATCTATGGGAAAATCAATTTTATTCTTTTTAT  450

seq1  TATTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTC  500

seq1  CCCCATACCCTCCCCCCACTTCCCAACCCACCCATTTTTTTTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACCCTCCCCCCACTTCCCAACCCACCCATTTTTTTTTTTTTTTT  550

seq1  TGGCCCTGGCATTCCCCTGTAGTGGGGCATATAACGTTTGTGTGTCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCATTCCCCTGTAGTGGGGCATATAACGTTTGTGTGTCCAAC  600

seq1  GGGGCTCTCTTTCCATTGATGGCCAAGTAGGCCCTCTTTTGATACATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTCTTTCCATTGATGGCCAAGTAGGCCCTCTTTTGATACATATG  650

seq1  CAGCTAGAGTCCAGAGCTCCGGGGTACTGGTTAATAATAATAATAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAGTCCAGAGCTCCGGGGTACTGGTTAATAATAATAATAATGTT  700

seq1  GTTATAATAATGTTAAATGTGCTGATGTTGATTATTGTGAATGTTA-CTT  749
      ||||||||||||||||||||||||||||||||| |||||| ||||| |||
seq2  GTTATAATAATGTTAAATGTGCTGATGTTGATTTTTGTGATTGTTACCTT  750

seq1  GGGGAACTTAAGTTAAAGATTCTGG-ATGTGTC-ATGTGATGCAGAAATG  797
      ||||||||||||||||||||||||| |||||||  ||||||||| |||||
seq2  GGGGAACTTAAGTTAAAGATTCTGGAATGTGTCTTTGTGATGCATAAATG  800

seq1  GGTTG-TTTTGCTGAGACAGACTCACATGG-TGTTTTTATCTGAGG  841
      ||||| ||||||||| ||| |||||||||| |||||||||||||||
seq2  GGTTGTTTTTGCTGATACAAACTCACATGGTTGTTTTTATCTGAGG  846


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