BAC Information

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BAC

Clone NameB6Ng01-223K24
Chromosome12 (Build37)
Map Location 11,918,385 - 12,057,151
singlet/doubletdoublet
Overlap geneLOC100043209
Upstream geneKcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110
Downstream geneD12Ertd553e, LOC100043215, Mycn, EG668473
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223K24.bB6Ng01-223K24.g
ACCGA038355GA038356
length1,1281,137
definitionB6Ng01-223K24.b B6Ng01-223K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,056,027 - 12,057,151)(11,918,385 - 11,919,536)
sequence
gaattcagtatgctggaggtaagggcatgaatccagtgaaggagattctg
gttattaatcttcctggcttcccaaaagccagggataagagctttggcaa
aactgtttctccagcactttccccttgttttccttctgctgtctcatcat
gtgtgtgcaactctggtttaatcactctgtgtgtgcacacagtgcacagg
cacatgccttgggatagaaaaaaaagtgccagctgcagttgactgactgt
gtccttttcactaggctgtagagctgcaattctcaacctgtgggtcatga
ggccctgggggtcacctaagaccatcagagaacaagaatacttaaatata
acagtagcagaattagagctatgaactagaggcaaaaaataattctgtgg
ttgggggtcacctcaacgtgaggtattaatgggtgtcagaattaggaaag
ttgaaaccagggggctagagaaactataaatctaaggcccatgtcattca
caactcacgttgagaaaaggcacaagatcctcaatcagttgcagagatga
atgtcaaaacctgtttttcaacatgtttatgtgagtccaaccctccccga
caccaaatctgtcagtaggaaaaatgcacagcacattcataaattaagaa
tcaaggttttctggtatctgctctggaaatagcaaaaaaccctaagaaaa
ctgtaagaattctggtaaagtatattcagggttagagtgataaaattggc
ttctgagaagtttctttgacaattacagccaggacttgaatgtatgaact
gaaatgtataaaggcaagagccaccatccagacatcccatatctgtatct
ttttggccagggaatctcaattcagcatcaggttcttgtatataacactg
ggaaaccacctttgttctctttggatcttgcacctgtgtggaggggttta
tctattatgtttattttcctcagaaagtagcaccaatatacaggaatgtt
cttagcatcgattttctgtttttcacaactttaaaaaagtaagtgtttat
ttcagtgacttagaaaaaaaaattttttaagaaaataatctctagaaata
caaggtattccagtcacaagtccacttc

gaattctataagcactgtgttattttcaagccaggtcctgaacccattcc
ttgataaacacactaatctatgtttcataacaattttgatgatcaaaagg
aaacacatatctaaattattctccaaacacatatcaacagagaaagtagt
aagtgttaaatggcattttgctcaagagaaacttttggacccctatagca
tcccataaatatttgctttactccttactttatgactatttcttaagatg
ttccatttaccaaaggacaaaaaacaaaacaaaacaaaatatccccaaca
aattcaccataatacagtgattctcaactttcctaatgttgcaatccttt
aatacagtttctcatgtgatgactctcaaccataaaattatttttgttgc
tactttatatttgctattgttgtgaatcataatataaattcttctggaga
cagaggtttatcaaaggggtcatgacccacgagctgagaaccactgccat
aatatattaaatataccttgccatggggtttttataggcttcttataacc
tttgaagtctaagcttgtataatgatttactctggattgaaacatttctt
catggaaagaaagaagaagagtctagtgaagtttaccagacatttctgcc
cactcaccaacttatgcaaacagtacagtcttgttgaagggataaggctc
ttcaatagaactgcctgcaaggtgtgcaggtaattacagtcatacagcat
tcattaattgtctccagtgttgggttgtagttttggtgtctaaattgcct
ttgaatcactcatgtctcggaagtaactcctcactcatgggtcctgtaat
aacttccaataaactaggttcacccagctggacttaagtgggatatttct
ttgaatgaggttttgttcatatccttcctaggaagtcagattatgtcttc
atctatagataaagctttcacactttatttaagttatgctcagatgagta
catcctcctgtgcagatatacaaagacactgtacagagcagttgcctgta
gccttaatgctgagatgctggtcagacaccaatagtttttctattagaca
ctgcaagccatatttcatggatatcagcctcgaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12056027_12057151
seq2: B6Ng01-223K24.b_44_1171 (reverse)

seq1  GAAGTGGAACTGTGACTTG-ATA-CTTGTATTTCTAGGAGAATTATTTTC  48
      ||||||||  ||||||| | ||| |||||||||||| ||| |||||||||
seq2  GAAGTGGACTTGTGACTGGAATACCTTGTATTTCTA-GAG-ATTATTTTC  48

seq1  TTTTAAAA-ATTTTTTTCTAAGTCACTGAAATAAACACTTACTTTTTTAA  97
      ||  ||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATTTTTTTTTCTAAGTCACTGAAATAAACACTTACTTTTTTAA  98

seq1  AG-TGTGAAAAACAG-AAATCGATGCTAAGAACATTCCTTGTATATTTGG  145
      || |||||||||||| |||||||||||||||||||||| |||||| ||||
seq2  AGTTGTGAAAAACAGAAAATCGATGCTAAGAACATTCC-TGTATA-TTGG  146

seq1  TGCTACTTTCTGAGGAAAATAAACATAATAGATAAACCCCTCCACACAGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTCTGAGGAAAATAAACATAATAGATAAACCCCTCCACACAGG  196

seq1  TGCAAGATCCAAAGAGAAC-AAGGTGGTTTCCCAGTGTTATATACAAGAA  244
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCAAGATCCAAAGAGAACAAAGGTGGTTTCCCAGTGTTATATACAAGAA  246

seq1  CCTGATGCTGAATTGAGATTCCCTGGCCAAAAAGATACAGATATGGGATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCTGAATTGAGATTCCCTGGCCAAAAAGATACAGATATGGGATG  296

seq1  TCTGGATGGTGGCTCTTGCC-TTATACATTTCAGTTCATACATTCAAGTC  343
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGGATGGTGGCTCTTGCCTTTATACATTTCAGTTCATACATTCAAGTC  346

seq1  CTGGCTGTAATTGTCAAAGAAACTTCTCAGAAGCCAATTTTATCACTCTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTAATTGTCAAAGAAACTTCTCAGAAGCCAATTTTATCACTCTA  396

seq1  ACCCTGAATATACTTTACCAGAATTCTTACAGTTTTCTTAGGGTTTTTTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAATATACTTTACCAGAATTCTTACAGTTTTCTTAGGGTTTTTTG  446

seq1  CTATTTCCAGAGCAGATACCAGAAAACCTTGATTCTTAATTTATGAATGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCAGAGCAGATACCAGAAAACCTTGATTCTTAATTTATGAATGT  496

seq1  GCTGTGCATTTTTCCTACTGACAGATTTGGTGTCGGGGAGGGTTGGACTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCATTTTTCCTACTGACAGATTTGGTGTCGGGGAGGGTTGGACTC  546

seq1  ACATAAACATGTTGAAAAACAGGTTTTGACATTCATCTCTGCAACTGATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACATGTTGAAAAACAGGTTTTGACATTCATCTCTGCAACTGATT  596

seq1  GAGGATCTTGTGCCTTTTCTCAACGTGAGTTGTGAATGACATGGGCCTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCTTGTGCCTTTTCTCAACGTGAGTTGTGAATGACATGGGCCTTA  646

seq1  GATTTATAGTTTCTCTAGCCCCCTGGTTTCAACTTTCCTAATTCTGACAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAGTTTCTCTAGCCCCCTGGTTTCAACTTTCCTAATTCTGACAC  696

seq1  CCATTAATACCTCACGTTGAGGTGACCCCCAACCACAGAATTATTTTTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATACCTCACGTTGAGGTGACCCCCAACCACAGAATTATTTTTTG  746

seq1  CCTCTAGTTCATAGCTCTAATTCTGCTACTGTTATATTTAAGTATTCTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGTTCATAGCTCTAATTCTGCTACTGTTATATTTAAGTATTCTTG  796

seq1  TTCTCTGATGGTCTTAGGTGACCCCCAGGGCCTCATGACCCACAGGTTGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATGGTCTTAGGTGACCCCCAGGGCCTCATGACCCACAGGTTGA  846

seq1  GAATTGCAGCTCTACAGCCTAGTGAAAAGGACACAGTCAGTCAACTGCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCAGCTCTACAGCCTAGTGAAAAGGACACAGTCAGTCAACTGCAG  896

seq1  CTGGCACTTTTTTTTCTATCCCAAGGCATGTGCCTGTGCACTGTGTGCAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTTTTTTTTCTATCCCAAGGCATGTGCCTGTGCACTGTGTGCAC  946

seq1  ACACAGAGTGATTAAACCAGAGTTGCACACACATGATGAGACAGCAGAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGTGATTAAACCAGAGTTGCACACACATGATGAGACAGCAGAAG  996

seq1  GAAAACAAGGGGAAAGTGCTGGAGAAACAGTTTTGCCAAAGCTCTTATCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAGGGGAAAGTGCTGGAGAAACAGTTTTGCCAAAGCTCTTATCC  1046

seq1  CTGGCTTTTGGGAAGCCAGGAAGATTAATAACCAGAATCTCCTTCACTGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTTGGGAAGCCAGGAAGATTAATAACCAGAATCTCCTTCACTGG  1096

seq1  ATTCATGCCCTTACCTCCAGCATACTGAATTC  1125
      ||||||||||||||||||||||||||||||||
seq2  ATTCATGCCCTTACCTCCAGCATACTGAATTC  1128


seq1: chr12_11918385_11919536
seq2: B6Ng01-223K24.g_66_1202

seq1  GAATTCTATAAGCACTGTGTTATTTTCAAGCCAGGTCCTGAACCCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAGCACTGTGTTATTTTCAAGCCAGGTCCTGAACCCATTCC  50

seq1  TTGATAAACACACTAATCTATGTTTCATAACAATTTTGATGATCAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAACACACTAATCTATGTTTCATAACAATTTTGATGATCAAAAGG  100

seq1  AAACACATATCTAAATTATTCTCCAAACACATATCAACAGAGAAAGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATATCTAAATTATTCTCCAAACACATATCAACAGAGAAAGTAGT  150

seq1  AAGTGTTAAATGGCATTTTGCTCAAGAGAAACTTTTGGACCCCTATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTAAATGGCATTTTGCTCAAGAGAAACTTTTGGACCCCTATAGCA  200

seq1  TCCCATAAATATTTGCTTTACTCCTTACTTTATGACTATTTCTTAAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAAATATTTGCTTTACTCCTTACTTTATGACTATTTCTTAAGATG  250

seq1  TTCCATTTACCAAAGGACAAAAAACAAAACAAAACAAAATATCCCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTACCAAAGGACAAAAAACAAAACAAAACAAAATATCCCCAACA  300

seq1  AATTCACCATAATACAGTGATTCTCAACTTTCCTAATGTTGCAATCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACCATAATACAGTGATTCTCAACTTTCCTAATGTTGCAATCCTTT  350

seq1  AATACAGTTTCTCATGTGATGACTCTCAACCATAAAATTATTTTTGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTTTCTCATGTGATGACTCTCAACCATAAAATTATTTTTGTTGC  400

seq1  TACTTTATATTTGCTATTGTTGTGAATCATAATATAAATTCTTCTGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATATTTGCTATTGTTGTGAATCATAATATAAATTCTTCTGGAGA  450

seq1  CAGAGGTTTATCAAAGGGGTCATGACCCACGAGCTGAGAACCACTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTTATCAAAGGGGTCATGACCCACGAGCTGAGAACCACTGCCAT  500

seq1  AATATATTAAATATACCTTGCCATGGGGTTTTTATAGGCTTCTTATAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAAATATACCTTGCCATGGGGTTTTTATAGGCTTCTTATAACC  550

seq1  TTTGAAGTCTAAGCTTGTATAATGATTTACTCTGGATTGAAACATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTCTAAGCTTGTATAATGATTTACTCTGGATTGAAACATTTCTT  600

seq1  CATGGAAAGAAAGAAGAAGAGTCTAGTGAAGTTTACCAGACATTTCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGAAAGAAGAAGAGTCTAGTGAAGTTTACCAGACATTTCTGCC  650

seq1  CACTCACCAACTTATGCAAACAGTACAGTCTTGTTGAAGGGATAAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCAACTTATGCAAACAGTACAGTCTTGTTGAAGGGATAAGGCTC  700

seq1  TTCAATAGAACTGCCTGCAAGGTGTGCAGGTAATTACAGTCATACAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGAACTGCCTGCAAGGTGTGCAGGTAATTACAGTCATACAGCAT  750

seq1  TCATTAATTGTCTCCAGTGTTGGGTTGTAGTTTTGGTGTCTAAATTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATTGTCTCCAGTGTTGGGTTGTAGTTTTGGTGTCTAAATTGCCT  800

seq1  TTGAATCACTCATGTCTCGGAAGTAACTCCTCACTCAT-GGTCCTGTAAT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGAATCACTCATGTCTCGGAAGTAACTCCTCACTCATGGGTCCTGTAAT  850

seq1  AACTTCCAATAAACTAGGTTCACCCAGCTGGACTTAAGTGGGATATTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCAATAAACTAGGTTCACCCAGCTGGACTTAAGTGGGATATTTCT  900

seq1  TTGAATGAGGTTTTGTTCATAT-CTTCCTAGGAAAGTCAGATTATGTCTT  948
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  TTGAATGAGGTTTTGTTCATATCCTTCCTAGG-AAGTCAGATTATGTCTT  949

seq1  CATCTATAGATAAAGCTTTCAACACTTTATTTAAGTTATGCTCAGATGAA  998
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  CATCTATAGATAAAGCTTTC-ACACTTTATTTAAGTTATGCTCAGATG-A  997

seq1  GTAACATCCTCCTGTGCAGATTATACAAAGACACTGTACAGAAGCAGGGT  1048
      || ||||||||||||||||| |||||||||||||||||||| ||||  ||
seq2  GT-ACATCCTCCTGTGCAGA-TATACAAAGACACTGTACAG-AGCA--GT  1042

seq1  GCCCTGTAGCCTTAAATGCTGGAGAATGCT-GTCAGACACAAATAGTTTT  1097
        ||||||||||| |||||| ||| ||||| ||||||||| |||||||||
seq2  TGCCTGTAGCCTT-AATGCT-GAG-ATGCTGGTCAGACACCAATAGTTTT  1089

seq1  TCTATTAGACACTGCCAGCCCCATAATTCTCATGTGATAATCAAGCCTCG  1147
      ||||||||||||||| ||  |||||  | ||||| ||| ||| |||||||
seq2  TCTATTAGACACTGCAAG--CCATA--TTTCATG-GAT-ATC-AGCCTCG  1132

seq1  AATGG  1152
      |||||
seq2  AATGG  1137


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