BAC Information

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BAC

Clone NameB6Ng01-223O19
Chromosome12 (Build37)
Map Location 63,504,353 - 63,505,489
singlet/doubletsinglet
Overlap genenone
Upstream geneNanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223O19.bB6Ng01-223O19.g
ACCGA038533GA038534
length1,1621,178
definitionB6Ng01-223O19.b B6Ng01-223O19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctcacatgatttccttcttggaccatgttccaacatatcccc
tttttatattatttttatagcagcatactcagaatgattttgattgagat
gctatatataaatctagttattatttgatacttgagtatactataagcaa
attataaacataattattgatattagaacaatgactagctgcatatatgt
agcagaagatggcctagtcagacatcattagaaagagaggccccttggtc
ttgcaaatgttatatgctccagtacaggggaatgccagggccaagaagtg
ggattcggtgggtaggggagcagggcagggggagggtatagggaactttc
gagatagcatttgaaatgtatataaagaaaatatcccatgaaaaatgaga
gaaagaaaaaaaaacaatgaaagccttgggtgtaatactttgccatcaac
tcttctaaacgatgtccatcattattggtaacactatattgaccaggaaa
atctagagagtagtttgcagaatcatgatatggttaataaaccttgtatc
atgaaaaacatagacttgtttttgttctttaacaggaatgcaatgttatg
atggcctatgaaaacagaaaatgacttatatcccaaggaaaattaagtac
agtccccttttcagatgaatgaacaactctatcagatttcctaggttcag
taataagctcagagtcattagtaaagatagcatgaactggccatatccaa
tttacaagttaaatccaagaagaatgaggaatataattctattacgcatg
cacagaggtaatcacccataagcacagatcaaagcaactcatatcaataa
aaagagattctcaggcagtgtagggttctgtgtgttttgttgaataactt
cttccatatttcatagggcctgcacttttgctctaggtgggcagacttgt
tcagctgatgatgtattcagtagcttgtaattgtacctcttatagaggtt
ttgcttatattttctgatgactccaattgttctccttcatcctccaccat
catttctaggattgctcaggtcttgggaggcaccaaagaagaattctata
accgttttggttaatcccaccatgcccatggaccattagccctcttttca
gaaatttctttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcccaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtacccaagagctaagggatctcaaccctatag
tgaacacattatgaactaccagtacccctgagctcttgactctagctgca
tattgttattcaaagattgcctagtcgccatcacttgagaagagtccatg
acacgcagaccttgtggtcagttacagtacgcagccaaatgagggtggaa
ttgtggttggataatggagacatacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63504353_63505489
seq2: B6Ng01-223O19.b_49_1210 (reverse)

seq1  AAAAGAAA--TCTGAAA--AGGGCTA--TGTCATT--GCATG--TGGATT  40
      ||||||||  |||||||  |||||||   |||  |  |||||   |||||
seq2  AAAAGAAATTTCTGAAAAGAGGGCTAATGGTCCATGGGCATGGTGGGATT  50

seq1  TACCAAAAC-GTTATAG-ATTCTTCTTTGGTTCCTCC--AGACCTGAGCA  86
       |||||||| ||||||| ||||||||||||| |||||  |||||||||||
seq2  AACCAAAACGGTTATAGAATTCTTCTTTGGTGCCTCCCAAGACCTGAGCA  100

seq1  AT-CTAG-AATGATGGTGGAGGATG-AGGAG-ACAATGGAAGTCATCAG-  131
      || |||| ||||||||||||||||| ||||| ||||| | ||||||||| 
seq2  ATCCTAGAAATGATGGTGGAGGATGAAGGAGAACAATTGGAGTCATCAGA  150

seq1  AAATAT-AGC-AAACCTCTATAAGA-GTACAA-TACAAGCTACTGAATAC  177
      |||||| ||| |||||||||||||| |||||| |||||||||||||||||
seq2  AAATATAAGCAAAACCTCTATAAGAGGTACAATTACAAGCTACTGAATAC  200

seq1  ATCATCAGCTG-ACAAGTCTGCCCACCTAGAGC-AAAGTGCAGGCCCTAT  225
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  ATCATCAGCTGAACAAGTCTGCCCACCTAGAGCAAAAGTGCAGGCCCTAT  250

seq1  GAAATATGGAAGAAGTTATTCAACAAAACACACAGAACCCTACACTGCCT  275
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGAAGAAGTTATTCAACAAAACACACAGAACCCTACACTGCCT  300

seq1  GAGAATCTCTTTTTATTGATATGAGTTGCTTTGATCTGTGCTTATGGGTG  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTCTTTTTATTGATATGAGTTGCTTTGATCTGTGCTTATGGGTG  350

seq1  ATTACCTCTGTGCATGCGTAATAGAATTATATTCCTCATTCTTCTTGGAT  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTCTGTGCATGCGTAATAGAATTATATTCCTCATTCTTCTTGGAT  400

seq1  TTAACTTGTAAATTGGATATGGCCAGTTCCTGCTATCTTTACTAATGACT  425
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTAACTTGTAAATTGGATATGGCCAGTTCATGCTATCTTTACTAATGACT  450

seq1  CTGAGCTTATTACTGAACCTAGGAAATCTGATAGAGTTGTTCATTCATCT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTATTACTGAACCTAGGAAATCTGATAGAGTTGTTCATTCATCT  500

seq1  GAAAAGGGGACTGTACTTAATTTTCCTTGGGATATAAGTCATTTTCTGTT  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGGACTGTACTTAATTTTCCTTGGGATATAAGTCATTTTCTGTT  550

seq1  TTCATAGGCCATCATAACATTGCATTCCTGTTAAAGAACAAAAACAAGTC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGGCCATCATAACATTGCATTCCTGTTAAAGAACAAAAACAAGTC  600

seq1  TATGTTTTTCATGATACAAGGTTTATTAACCATATCATGATTCTGCAAAC  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTCATGATACAAGGTTTATTAACCATATCATGATTCTGCAAAC  650

seq1  TACTCTCTAGATTTTCCTGGTCAATATAGTGTTACCAATAATGATGGACA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTAGATTTTCCTGGTCAATATAGTGTTACCAATAATGATGGACA  700

seq1  TCGTTTAGAAGAGTTGATGGCAAAGTATTACACCCAAGGCTTTCATTGTT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTAGAAGAGTTGATGGCAAAGTATTACACCCAAGGCTTTCATTGTT  750

seq1  TTTTTTTCTTTCTCTCATTTTTCATGGGATATTTTCTTTATATACATTTC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTCTCTCATTTTTCATGGGATATTTTCTTTATATACATTTC  800

seq1  AAATGCTATCTCGAAAGTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTATCTCGAAAGTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTA  850

seq1  CCCACCGAATCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGAGCATA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCGAATCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGAGCATA  900

seq1  TAACATTTGCAAGACCAAGGGGCCTCTCTTTCTAATGATGTCTGACTAGG  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGCAAGACCAAGGGGCCTCTCTTTCTAATGATGTCTGACTAGG  950

seq1  CCATCTTCTGCTACATATATGCAGCTAGTCATTGTTCTAATATCAATAAT  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCTGCTACATATATGCAGCTAGTCATTGTTCTAATATCAATAAT  1000

seq1  TATGTTTATAATTTGCTTATAGTATACTCAAGTATCAAATAATAACTAGA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATAATTTGCTTATAGTATACTCAAGTATCAAATAATAACTAGA  1050

seq1  TTTATATATAGCATCTCAATCAAAATCATTCTGAGTATGCTGCTATAAAA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATAGCATCTCAATCAAAATCATTCTGAGTATGCTGCTATAAAA  1100

seq1  ATAATATAAAAAGGGGATATGTTGGAACATGGTCCAAGAAGGAAATCATG  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAAAAGGGGATATGTTGGAACATGGTCCAAGAAGGAAATCATG  1150

seq1  TGAGAAGAATTC  1137
      ||||||||||||
seq2  TGAGAAGAATTC  1162