BAC Information

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BAC

Clone NameB6Ng01-223P01
Chromosome12 (Build37)
Map Location 73,054,285 - 73,222,506
singlet/doubletdoublet
Overlap geneDaam1, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
Upstream geneActr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, LOC666213
Downstream geneRtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223P01.bB6Ng01-223P01.g
ACCGA038543GA038544
length976910
definitionB6Ng01-223P01.b B6Ng01-223P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,054,285 - 73,055,251)(73,221,617 - 73,222,506)
sequence
gaattcagaggaacaaagaaaaggagagaggcaaggtcagagctctggag
agggggaaattgagtccaggagtgtggaaaggttcttaaggcagaccaaa
ggggaggacctgtgaaccagcacactgcctttagatgggccaacaagtgc
caggcatctgcacaggggtttcctgagagcttccctggcagcctggctcc
tatgtgaatgagcagggtggagcatcctaaataagcagcaggcttccttg
tctgctctcttggcttagctcctcagaaaggctgcctcaaaaaccaaatg
ctaggcaccaaggaagagatgggtggacagagactagagaaaaatgaagc
tggggggttcttttcaagatggtttctgatgtatttgtgtgggaaacagg
gtgctattcaccagaggattttactgtgagagagggagagtgtctatgca
gggcctttttgtgctggttcagtagactaggaaaataaagtccattgcct
gccatgatgccattaaccctcaccagccctcacccagccccttcataagt
acaaagatgccacgtgcactgttgtgcgccaagctagggaaggtgacaga
aaaggagatgagggctttgttcagagaatagtgcaccttatgtctcaaag
aacaaacaaaggtgtgctcagagcccgtggcctgcagctactcagcccag
ttcatttctgattggcttctgtgttctcctttctttctctggtgccctat
gaatggaggtccctggatccaggcataacattttagcaggtttccatgta
attctagtaatctttatgatctggctacaagttcccatttcctttcgcac
tttcaggttgtctgaggtgaaagtttggaaattgtagataagtgtattca
ttggaggggaagcatcaagggttccacatggtgctattcaagtctaagca
tgtgggttgcatttttgattaaaggc
gaattcacactggagagaaaaccttctgagtggaaagactgtggggggag
ggcgtgctcatgcagaagtcaagcctcatcagacatcagagaactcacac
aggagagaagcccttcgtgtgtaaggagtgtgggaaaacctttagcagca
aatcaaatcttactgagcatgagataattcatattgttgagaaacccctt
aaatgtaacaaatgtggaacagcttttggccacaaaaaagtacctgataa
attgtcaaagcattcacactggagagaagccatatgaatgcaatgtatgt
ggggagccttctcacagccaacatcacttattgtgcatgtaagaattcat
tcaggtgataagccttacgagtgcaatgtatgtgggaaagccttctctca
gagtttgtctttaacggggcatgtgaggagccatacgggtgagaaaccct
gtggctgtcatgaatgtgggaaggcctattctcagttctcaaccctggcc
ctgcatctgagaatacacactggtcaaaagccttatcggtgtagtgagtg
tagaaaggctttcagtcagaagtcccatcacattagacaccagaaaatgt
gtactcattaaacgctcggaatatcttctatacgggggaagtggctccaa
tttcaggaggtgggacctttcagagaagtcagagctgagcattgcttgag
ctgaataaagcactttggctcaggaatcagagatgcttcataaaaaagct
agaagatttcagtcctcattggtccgctcccttgcccaacacccttgaat
cgactaaataatagcaaaaaactttccccaacttgtggttgatcctgggg
actccttgggccattacaaacacaaaaacaagtgcgtgggtctcctggga
tgatgcccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73054285_73055251
seq2: B6Ng01-223P01.b_46_1021

seq1  GAATTCAGAGGAACAAAGAAAAGGAGAGAGGCAAGGTCAGAGCTCTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGAACAAAGAAAAGGAGAGAGGCAAGGTCAGAGCTCTGGAG  50

seq1  AGGGGGAAATTGAGTCCAGGAGTGTGGAAAGGTTCTTAAGGCAGACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAATTGAGTCCAGGAGTGTGGAAAGGTTCTTAAGGCAGACCAAA  100

seq1  GGGGAGGACCTGTGAACCAGCACACTGCCTTTAGATGGGCCAACAAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGACCTGTGAACCAGCACACTGCCTTTAGATGGGCCAACAAGTGC  150

seq1  CAGGCATCTGCACAGGGGTTTCCTGAGAGCTTCCCTGGCAGCCTGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCTGCACAGGGGTTTCCTGAGAGCTTCCCTGGCAGCCTGGCTCC  200

seq1  TATGTGAATGAGCAGGGTGGAGCATCCTAAATAAGCAGCAGGCTTCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAATGAGCAGGGTGGAGCATCCTAAATAAGCAGCAGGCTTCCTTG  250

seq1  TCTGCTCTCTTGGCTTAGCTCCTCAGAAAGGCTGCCTCAAAAACCAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTCTTGGCTTAGCTCCTCAGAAAGGCTGCCTCAAAAACCAAATG  300

seq1  CTAGGCACCAAGGAAGAGATGGGTGGACAGAGACTAGAGAAAAATGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCACCAAGGAAGAGATGGGTGGACAGAGACTAGAGAAAAATGAAGC  350

seq1  TGGGGGGTTCTTTTCAAGATGGTTTCTGATGTATTTGTGTGGGAAACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTTCTTTTCAAGATGGTTTCTGATGTATTTGTGTGGGAAACAGG  400

seq1  GTGCTATTCACCAGAGGATTTTACTGTGAGAGAGGGAGAGTGTCTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATTCACCAGAGGATTTTACTGTGAGAGAGGGAGAGTGTCTATGCA  450

seq1  GGGCCTTTTTGTGCTGGTTCAGTAGACTAGGAAAATAAAGTCCATTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTTTGTGCTGGTTCAGTAGACTAGGAAAATAAAGTCCATTGCCT  500

seq1  GCCATGATGCCATTAACCCTCACCAGCCCTCACCCAGCCCCTTCATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATGCCATTAACCCTCACCAGCCCTCACCCAGCCCCTTCATAAGT  550

seq1  ACAAAGATGCCACGTGCACTGTTGTGCGCCAAGCTAGGGAAGGTGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATGCCACGTGCACTGTTGTGCGCCAAGCTAGGGAAGGTGACAGA  600

seq1  AAAGGAGATGAGGGC-TTGTTCAGAGAATAGTGCACCTTATGTCTCAAAG  649
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAGGAGATGAGGGCTTTGTTCAGAGAATAGTGCACCTTATGTCTCAAAG  650

seq1  AACAAACAAAGGTGTGCTCAGAGCCCGTGGCCTGCAGCTACTCAGCCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAGGTGTGCTCAGAGCCCGTGGCCTGCAGCTACTCAGCCCAG  700

seq1  TTCATTTCTGATTGGCTTCTGTGTTCTCC-TTCTTTCTCTGGTGCCCTAG  748
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTCATTTCTGATTGGCTTCTGTGTTCTCCTTTCTTTCTCTGGTGCCCTAT  750

seq1  GAA-GGAGGTCCCTGGATCCAGGCATAACATTTTAGCAGGTTTCCATGTA  797
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGGTCCCTGGATCCAGGCATAACATTTTAGCAGGTTTCCATGTA  800

seq1  ATTCAAGTAATC-TTATGATCTGGCTACAAG-TCCCA-TTCCTTTCGCAC  844
      |||| ||||||| |||||||||||||||||| ||||| ||||||||||||
seq2  ATTCTAGTAATCTTTATGATCTGGCTACAAGTTCCCATTTCCTTTCGCAC  850

seq1  -TTCAGGTTGTCTGAGGTGAAGGTTTGGAAA-TGTAGAAAAGTGTATTCA  892
       |||||||||||||||||||| ||||||||| |||||| |||||||||||
seq2  TTTCAGGTTGTCTGAGGTGAAAGTTTGGAAATTGTAGATAAGTGTATTCA  900

seq1  ATGGAGGGGAAGCGACAAGGGTTCCACATGGTGCAATTCAAGTCTAAGCA  942
       ||||||||||||  ||||||||||||||||||| |||||||||||||||
seq2  TTGGAGGGGAAGCATCAAGGGTTCCACATGGTGCTATTCAAGTCTAAGCA  950

seq1  TGTGGGTTGCATTTGTGA-TGAAGGC  967
      |||||||||||||| ||| | |||||
seq2  TGTGGGTTGCATTTTTGATTAAAGGC  976

seq1: chr12_73221617_73222506
seq2: B6Ng01-223P01.g_69_978 (reverse)

seq1  TAGGGCATCATCACAAGAGA-CCACGCACTTG-TTTTGTGTTTGTAATGG  48
      |||||||||||| || |||| ||||||||||| |||||||||||||||||
seq2  TAGGGCATCATCCCAGGAGACCCACGCACTTGTTTTTGTGTTTGTAATGG  50

seq1  CC--ATGGGT-CCCAGG-TACAGCACAAGTTGGGGAA--GTTTTTGCT-T  91
      ||  | | || |||||| |  | ||||||||||||||   |||||||| |
seq2  CCCAAGGAGTCCCCAGGATCAACCACAAGTTGGGGAAAGTTTTTTGCTAT  100

seq1  TGTTT-GTCGGATCAA-GGTGTT-GGCATGGG-GCGG-CCAATGAGGACT  136
      | ||| ||||  |||| |||||| |||| ||| |||| ||||||||||||
seq2  TATTTAGTCGATTCAAGGGTGTTGGGCAAGGGAGCGGACCAATGAGGACT  150

seq1  G-AATCTTCTAGC-TTTTTCTGAAGCATCTCTGATTCCTGAGCC-AAGTG  183
      | ||||||||||| ||||| |||||||||||||||||||||||| |||||
seq2  GAAATCTTCTAGCTTTTTTATGAAGCATCTCTGATTCCTGAGCCAAAGTG  200

seq1  C-TTATTCAGCTC-AGCAATGCTCAGCTCTGACTTCTCCTGAAGGTCCCA  231
      | ||||||||||| ||||||||||||||||||||||||   |||||||||
seq2  CTTTATTCAGCTCAAGCAATGCTCAGCTCTGACTTCTCTGAAAGGTCCCA  250

seq1  CCTCCTGAAATTGGAGCCACTT-CCCCGTATTGAAGATATTCCGAGCGTT  280
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  CCTCCTGAAATTGGAGCCACTTCCCCCGTATAGAAGATATTCCGAGCGTT  300

seq1  TAATGAGTACACATTTTCTGGTGTCTAATGTGATGGGACTTCTGACTGAA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTACACATTTTCTGGTGTCTAATGTGATGGGACTTCTGACTGAA  350

seq1  AGCCTTTCTACACTCACTACACCGATAAGGCTTTTGACCAGTGTGTATTC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTACACTCACTACACCGATAAGGCTTTTGACCAGTGTGTATTC  400

seq1  TCAGATGCAGGGCCAGGGTTGAGAACTGAGAATAGGCCTTCCCACATTCA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGCAGGGCCAGGGTTGAGAACTGAGAATAGGCCTTCCCACATTCA  450

seq1  TGACAGCCACAGGGTTTCTCACCCGTATGGCTCCTCACATGCCCCGTTAA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCACAGGGTTTCTCACCCGTATGGCTCCTCACATGCCCCGTTAA  500

seq1  AGACAAACTCTGAGAGAAGGCTTTCCCACATACATTGCACTCGTAAGGCT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACTCTGAGAGAAGGCTTTCCCACATACATTGCACTCGTAAGGCT  550

seq1  TATCACCTGAATGAATTCTTACATGCACAATAAGTGATGTTGGCTGTGAG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCTGAATGAATTCTTACATGCACAATAAGTGATGTTGGCTGTGAG  600

seq1  AAGGCTCCCCACATACATTGCATTCATATGGCTTCTCTCCAGTGTGAATG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCCCACATACATTGCATTCATATGGCTTCTCTCCAGTGTGAATG  650

seq1  CTTTGACAATTTATCAGGTACTTTTTTGTGGCCAAAAGCTGTTCCACATT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAATTTATCAGGTACTTTTTTGTGGCCAAAAGCTGTTCCACATT  700

seq1  TGTTACATTTAAGGGGTTTCTCAACAATATGAATTATCTCATGCTCAGTA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATTTAAGGGGTTTCTCAACAATATGAATTATCTCATGCTCAGTA  750

seq1  AGATTTGATTTGCTGCTAAAGGTTTTCCCACACTCCTTACACACGAAGGG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGATTTGCTGCTAAAGGTTTTCCCACACTCCTTACACACGAAGGG  800

seq1  CTTCTCTCCTGTGTGAGTTCTCTGATGTCTGATGAGGCTTGACTTCTGCA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCTGTGTGAGTTCTCTGATGTCTGATGAGGCTTGACTTCTGCA  850

seq1  TGAGCACGCCCTCCCCCCACAGTCTTTCCACTCAGAAGGTTTTCTCTCCA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACGCCCTCCCCCCACAGTCTTTCCACTCAGAAGGTTTTCTCTCCA  900

seq1  GTGTGAATTC  890
      ||||||||||
seq2  GTGTGAATTC  910