BAC Information

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BAC

Clone NameB6Ng01-224I12
Chromosome12 (Build37)
Map Location 53,850,779 - 54,036,993
singlet/doubletdoublet
Overlap geneAkap6
Upstream geneHectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224I12.bB6Ng01-224I12.g
ACCGA038965GA038966
length997658
definitionB6Ng01-224I12.b B6Ng01-224I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,036,011 - 54,036,993)(53,850,779 - 53,851,434)
sequence
gaattcattcctcacttcactaattggaaatacagtgtgctaaatattgg
cttctcgtgataaggttccaaaatatgcaacgtgttttcttctgttaaac
gtcgtgggacaatacatgaatactctgtcctgtgtttggtattaagcatc
aggaaacaggatcaggtgactccacactgtgtttcattttaattaaagaa
gttgggtaatcatacattgtaagatcgggtcttccttccatgactctcat
actgtctgtggtctatgacatcaagccaggcaatggaggcttgaggacca
aagcccatgggctctggtgttagtggataactgaacctggggaatgcagt
ctgggttgtggatgcccaggggtgagtctgctttgttcttttcttccagg
agaaaggggactttttaaagtaccataaacagagatagactgaagagaga
gatagtatgaaactaagagagatagcaatgtaacatagagataaggattt
gaactgacgcaattcaaaatgatgagttgtgtcatccatccttctcagta
gatacggtaacatttcagctcaatattccagaaagagaaaatatttgtct
ccctgtgtgctattcagcatttcttacattgttccgtctgctacaagtat
tcagtcaaatcaaaaacaaaaaacaaaaacaaaaacaaaaaactatgtga
tgctcagaaatcttgatccttccttttaaacatgatttatttaaaaatct
gtatgggtatttttacctgctttgcatatatgttcactgtgtgcatgcag
tacctgtggaggccagaagagggagttaggtccccctggaaatgaaagtg
tggatggcttgtgagtcactgtgtgaatgctgggaacagaacccgagttc
ctctgcaagaacagtaaatgcttcctaactttctgagccatcaccgtcag
gatcctctcaataccttcttgatcagtccaatttaaggccagcaact
gaattctccagggtaaggctctgggttttgtgttgtccttgtttgcaaag
gattgggaattaaaaaaaaaatctctctgtatatttttatgggagagtag
agagtgaaatctagaagtcatgagtttcttgttcatggtttgctactaca
gtttaactacaggaggggaggagcaaggggtagcctatattagctgctca
ggggtcaacatcagaaggttttggtaatcaatgtgacattggacttccac
tgagttttaagggtgtgaaatgattcatttacgttgaaaaatatgtggta
aagaatttgggtttcctggcctcgggccgcattccttgtgctattacagt
gtctctgatgaactggttcatcggaactggttcggcatgttctgtggtag
ggcagccctgcctctcagcgagcttcccgaagcaaggagaacaaagaaca
cttattgttgctggctctgatctcagggagagtgactgccgccaccgaca
aagtgcccggagcctaagctctgcagacacccagcttgcatgtgtgggaa
tggggagggattcggatgagcaagttaggatggaggaagacatgtggggg
aagcttacggtgaaaccctgcaatttgtaaaattggatctcattgatggt
aatgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_54036011_54036993
seq2: B6Ng01-224I12.b_48_1044 (reverse)

seq1  AGGTGCT-GCCTT-AATTGGACTGATC-AGAA-GTATTGAG-GGAT-CTG  44
      || |||| ||||| ||||||||||||| |||| |||||||| |||| |||
seq2  AGTTGCTGGCCTTAAATTGGACTGATCAAGAAGGTATTGAGAGGATCCTG  50

seq1  AC-GTGATGGCTCAG-AAGTTAGG-AGCATTTACTGTTCTTGCAGAGG-A  90
      || |||||||||||| |||||||| ||||||||||||||||||||||| |
seq2  ACGGTGATGGCTCAGAAAGTTAGGAAGCATTTACTGTTCTTGCAGAGGAA  100

seq1  CTCGGGTTCTGTTCCCAGCATTCACACAGTGACTCAC-AGCCATCCACAC  139
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCGGGTTCTGTTCCCAGCATTCACACAGTGACTCACAAGCCATCCACAC  150

seq1  TTTCATTTCCA-GGGGACCTAACTCCCTCTTCTGGCCTCCACAGGTACTG  188
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCCAGGGGGACCTAACTCCCTCTTCTGGCCTCCACAGGTACTG  200

seq1  CATGCACACAGTGAACATATATGC-AAGCAGGTAAAAATACCCATACAGA  237
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGCACACAGTGAACATATATGCAAAGCAGGTAAAAATACCCATACAGA  250

seq1  TTTTTAAAT-AATCATGTTTAAAAGGAAGGATCAAGATTTCTGAGCATCA  286
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATAAATCATGTTTAAAAGGAAGGATCAAGATTTCTGAGCATCA  300

seq1  CATAGTTTTTTGTTTTTGTTTTTGTTTTTTGTTTTTGATTTGACTGAATA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTTTTGTTTTTGTTTTTGTTTTTTGTTTTTGATTTGACTGAATA  350

seq1  CTTGTAGCAGACGGAACAATGTAAGAAATGCTGAATAGCACACAGGGAGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGCAGACGGAACAATGTAAGAAATGCTGAATAGCACACAGGGAGA  400

seq1  CAAATATTTTCTCTTTCTGGAATATTGAGCTGAAATGTTACCGTATCTAC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTTCTCTTTCTGGAATATTGAGCTGAAATGTTACCGTATCTAC  450

seq1  TGAGAAGGATGGATGACACAACTCATCATTTTGAATTGCGTCAGTTCAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGATGGATGACACAACTCATCATTTTGAATTGCGTCAGTTCAAA  500

seq1  TCCTTATCTCTATGTTACATTGCTATCTCTCTTAGTTTCATACTATCTCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCTCTATGTTACATTGCTATCTCTCTTAGTTTCATACTATCTCT  550

seq1  CTCTTCAGTCTATCTCTGTTTATGGTACTTTAAAAAGTCCCCTTTCTCCT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTCTATCTCTGTTTATGGTACTTTAAAAAGTCCCCTTTCTCCT  600

seq1  GGAAGAAAAGAACAAAGCAGACTCACCCCTGGGCATCCACAACCCAGACT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAAGAACAAAGCAGACTCACCCCTGGGCATCCACAACCCAGACT  650

seq1  GCATTCCCCAGGTTCAGTTATCCACTAACACCAGAGCCCATGGGCTTTGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCCAGGTTCAGTTATCCACTAACACCAGAGCCCATGGGCTTTGG  700

seq1  TCCTCAAGCCTCCATTGCCTGGCTTGATGTCATAGACCACAGACAGTATG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGCCTCCATTGCCTGGCTTGATGTCATAGACCACAGACAGTATG  750

seq1  AGAGTCATGGAAGGAAGACCCGATCTTACAATGTATGATTACCCAACTTC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATGGAAGGAAGACCCGATCTTACAATGTATGATTACCCAACTTC  800

seq1  TTTAATTAAAATGAAACACAGTGTGGAGTCACCTGATCCTGTTTCCTGAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAAATGAAACACAGTGTGGAGTCACCTGATCCTGTTTCCTGAT  850

seq1  GCTTAATACCAAACACAGGACAGAGTATTCATGTATTGTCCCACGACGTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATACCAAACACAGGACAGAGTATTCATGTATTGTCCCACGACGTT  900

seq1  TAACAGAAGAAAACACGTTGCATATTTTGGAACCTTATCACGAGAAGCCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAGAAAACACGTTGCATATTTTGGAACCTTATCACGAGAAGCCA  950

seq1  ATATTTAGCACACTGTATTTCCAATTAGTGAAGTGAGGAATGAATTC  983
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGCACACTGTATTTCCAATTAGTGAAGTGAGGAATGAATTC  997

seq1: chr12_53850779_53851434
seq2: B6Ng01-224I12.g_70_727

seq1  GAATTCTCCAGGGTAAGGCTCTGGGTTTTGTGTTGTCCTTGTTTGCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGGTAAGGCTCTGGGTTTTGTGTTGTCCTTGTTTGCAAAG  50

seq1  GATTGGGAATTAAAAAAAAAATCTCTCTGTATATTTTTATGGGAGAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGAATTAAAAAAAAAATCTCTCTGTATATTTTTATGGGAGAGTAG  100

seq1  AGAGTGAAATCTAGAAGTCATGAGTTTCTTGTTCATGGTTTGCTACTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAATCTAGAAGTCATGAGTTTCTTGTTCATGGTTTGCTACTACA  150

seq1  GTTTAACTACAGGAGGGGAGGAGCAAGGGGTAGCCTATATTAGCTGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACTACAGGAGGGGAGGAGCAAGGGGTAGCCTATATTAGCTGCTCA  200

seq1  GGGGTCAACATCAGAAGGTTTTGGTAATCAATGTGACATTGGACTTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAACATCAGAAGGTTTTGGTAATCAATGTGACATTGGACTTCCAC  250

seq1  TGAGTTTTAAGGGTGTGAAATGATTCATTTACGTTGAAAAATATGTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTAAGGGTGTGAAATGATTCATTTACGTTGAAAAATATGTGGTA  300

seq1  AAGAATTTGGGTTTCCTGGCCTCGGGCCGCATTCCTTGTGCTATTACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGGGTTTCCTGGCCTCGGGCCGCATTCCTTGTGCTATTACAGT  350

seq1  GTCTCTGATGAACTGGTTCATCGGAACTGGTTCGGCATGTTCTGTGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGATGAACTGGTTCATCGGAACTGGTTCGGCATGTTCTGTGGTAG  400

seq1  GGCAGCCCTGCCTCTCAGCGAGCTTCCCGAAGCAAGGAGAACAAAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCTGCCTCTCAGCGAGCTTCCCGAAGCAAGGAGAACAAAGAACA  450

seq1  CTTATTGTTGCTGGCTCTGATCTCAGGGAGAGTGACTGCCGCCACCGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTTGCTGGCTCTGATCTCAGGGAGAGTGACTGCCGCCACCGACA  500

seq1  AAGTGCCCGGAGCCTAAGCTCTGCAGACACCCAGCTTGCATGTGTGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCCGGAGCCTAAGCTCTGCAGACACCCAGCTTGCATGTGTGGGAA  550

seq1  TGGGGAGGGATTCGGATGAGCAAGTTAGGATGGAGGAAGACATGTGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGATTCGGATGAGCAAGTTAGGATGGAGGAAGACATGTGGGGG  600

seq1  AAGCTTACGGTGAAA-CCTGCAA-TTGTAAAAATTGATCTCATTGATGGT  648
      ||||||||||||||| ||||||| |||||||| | |||||||||||||||
seq2  AAGCTTACGGTGAAACCCTGCAATTTGTAAAATTGGATCTCATTGATGGT  650

seq1  AATGATGA  656
      ||||||||
seq2  AATGATGA  658