BAC Information

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BAC

Clone NameB6Ng01-224L03
Chromosome12 (Build37)
Map Location 73,172,569 - 73,335,381
singlet/doubletdoublet
Overlap geneLOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1
Upstream geneArid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213, LOC666220, Gpr135
Downstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224L03.bB6Ng01-224L03.g
ACCGA039082GA039083
length1,138570
definitionB6Ng01-224L03.b B6Ng01-224L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,334,250 - 73,335,381)(73,172,569 - 73,173,144)
sequence
gaattcttagtgtgcccaacttttaggccagcaaaactcggtgtacggat
ggcataggtgtgacctaggaggccagtatgggtagaagtcagtagacact
gctgaagatgccctctggaagtgtacagaagctttgcctgggtaggaaac
acatggatttgaggctgcctctctatcattgcagttttcatctataaatt
acatcactgaattacttcactgaaatgtattataaaactagagtgcatgg
gtttagggtgtatgtgtctgtctgtctgtgtgtgcgcacgacatatatga
ttgcagtgaaagacagcaatgcgtggcagctcacacctataatacccgca
gtcaagagatagaagcatgaagatagtccaaagctcaccttggactgtag
agcagcacggcatcacaaacaacaacaacacaaaaccaacggtaacagaa
agaggctaagtcagacattgccatacacacctgtcatcccagcattaggt
tatagaacaggggttcaaggaagccaggctcacacagagaggacaaggct
agcccacgagaccctatctcaaaacaaacaaacagacaaacaaacaaaca
actctaaaatttacaggatttaggtcccctgtcctaacggagataatctt
atagtttacaacggtcttaatatttatgaggcccttttactaatttggtc
cgatcgtctcaaaccctggggtgtgagggcttgttttcacatttcatctc
gggggtgatagatgaggcttctgtcaggtgcacagctggtgacagcccgg
agccctgcttcctactgttccgccatctgcctctgaggtaggccgtgctt
tcctctgtgatttatcgaaagacaagttgtctgaatgatggtgaatagcc
ctcatattcacaagtttccattttgccaagtatcctctcaaatttccatt
cactcctgggatggtgggagactctaagaaggtaaatcaaacatgccagg
gatctgtgagaagcggtaaattcattaggtaatggggctcttcggacggc
atcccttcacttccctcatgaatgctgagtgacggaggtggagattccca
cccaacttctctggaaatatgttcacaataggaccctt
atattgatagtgaggatgatgatgatccaagggccacatttggaaaatca
ctgctggaacaaatttgtttcagtagactccttgctcacattgaacattc
ctgaggttgggcttcccgcttaagcctgtttctgaacaggtgttctcaag
gactggaatgtggatctaggaaggaagatgtcattactgttcaagggccg
gggctttggatggtaactagttaagtgcatttaaaggtttctcagaatca
gccttacagcgtctgggctagatcatcacgtttgtgttctttgttggtag
gggctgttccattcgaggatgattgacagtatttttgtatccaccattgg
atggcagcagctgcaacaacccaaataaacagcaaataaaagaccctgcc
ccataagactttaagtcttaggaaaacacaaatacattacaagatgagtg
ttttattttaataggaaattcaatggagatcgttgctagaggagtagata
aaaactttttatgccaaaccacattggactattggggtccgggtgggggt
ggggagcagaggaggagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73334250_73335381
seq2: B6Ng01-224L03.b_46_1183 (reverse)

seq1  AAGGG-CCTA-TGTGAACATATCT-CAGAG-AGGTGGGTGGG-ATCT-CA  44
      ||||| |||| ||||||||||| | ||||| || |||||||| |||| ||
seq2  AAGGGTCCTATTGTGAACATATTTCCAGAGAAGTTGGGTGGGAATCTCCA  50

seq1  CCTCCTGTCACTCAGCATTCATGAGGGAGGTGAGGGGATGCCGGTCCG-A  93
      ||||| |||||||||||||||||||||| |||| |||||||| ||||| |
seq2  CCTCC-GTCACTCAGCATTCATGAGGGAAGTGAAGGGATGCC-GTCCGAA  98

seq1  GAGCCCCCTTTAACTAATGAATTTACCGCTTCTCACAGATCCTGGGCATG  143
      ||| |||| ||| |||||||||||||||||||||||||||||  ||||||
seq2  GAG-CCCCATTACCTAATGAATTTACCGCTTCTCACAGATCCCTGGCATG  147

seq1  TTTGATTTACCTTCTTAGAGTCTCCCACCAT-CCAGGAGTTGAATGGAAA  192
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TTTGATTTACCTTCTTAGAGTCTCCCACCATCCCAGGAG-TGAATGGAAA  196

seq1  TTTGAGAGGATACTTGGCAAAATGGAAACTTGTGAATATGAGGGCTATTC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGGATACTTGGCAAAATGGAAACTTGTGAATATGAGGGCTATTC  246

seq1  ACCATCATTCAGACAACTTGTCTTTCGATAAATCACAGAGGAAAGCACGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATTCAGACAACTTGTCTTTCGATAAATCACAGAGGAAAGCACGG  296

seq1  CCTACCTCAGAGGCAGATGGCGGAACAGTAGGAAGCAGGGCTCC-GGCTG  341
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTACCTCAGAGGCAGATGGCGGAACAGTAGGAAGCAGGGCTCCGGGCTG  346

seq1  TCACCAGCTGTGCACCTGACAGAAGCCTCATCTATCACCCCCGAGATGAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCTGTGCACCTGACAGAAGCCTCATCTATCACCCCCGAGATGAA  396

seq1  ATGTGAAAACAAGCCCTCACA-CCCAGGGTTTGAGACGATCGGACCAAAT  440
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGTGAAAACAAGCCCTCACACCCCAGGGTTTGAGACGATCGGACCAAAT  446

seq1  TAGTAAAAGGGCCTCATAAATATTAAGACCGTTGTAAACTATAAGATTAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAGGGCCTCATAAATATTAAGACCGTTGTAAACTATAAGATTAT  496

seq1  CTCCGTTAGGACAGGGGACCTAAATCCTGTAAATTTTAGAGTTGTTTGTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTAGGACAGGGGACCTAAATCCTGTAAATTTTAGAGTTGTTTGTT  546

seq1  TGTTTGTCTGTTTGTTTGTTTTGAGATAGGGTCTCGTGGGCTAGCCTTGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTGTTTGTTTGTTTTGAGATAGGGTCTCGTGGGCTAGCCTTGT  596

seq1  CCTCTCTGTGTGAGCCTGGCTTCCTTGAACCCCTGTTCTATAACCTAATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGTGTGAGCCTGGCTTCCTTGAACCCCTGTTCTATAACCTAATG  646

seq1  CTGGGATGACAGGTGTGTATGGCAATGTCTGACTTAGCCTCTTTCTGTTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGACAGGTGTGTATGGCAATGTCTGACTTAGCCTCTTTCTGTTA  696

seq1  CCGTTGGTTTTGTGTTGTTGTTGTTTGTGATGCCGTGCTGCTCTACAGTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGGTTTTGTGTTGTTGTTGTTTGTGATGCCGTGCTGCTCTACAGTC  746

seq1  CAAGGTGAGCTTTGGACTATCTTCATGCTTCTATCTCTTGACTGCGGGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAGCTTTGGACTATCTTCATGCTTCTATCTCTTGACTGCGGGTA  796

seq1  TTATAGGTGTGAGCTGCCACGCATTGCTGTCTTTCACTGCAATCATATAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTGTGAGCTGCCACGCATTGCTGTCTTTCACTGCAATCATATAT  846

seq1  GTCGTGCGCACACACAGACAGACAGACACATACACCCTAAACCCATGCAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGCGCACACACAGACAGACAGACACATACACCCTAAACCCATGCAC  896

seq1  TCTAGTTTTATAATACATTTCAGTGAAGTAATTCAGTGATGTAATTTATA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTTATAATACATTTCAGTGAAGTAATTCAGTGATGTAATTTATA  946

seq1  GATGAAAACTGCAATGATAGAGAGGCAGCCTCAAATCCATGTGTTTCCTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAACTGCAATGATAGAGAGGCAGCCTCAAATCCATGTGTTTCCTA  996

seq1  CCCAGGCAAAGCTTCTGTACACTTCCAGAGGGCATCTTCAGCAGTGTCTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAAAGCTTCTGTACACTTCCAGAGGGCATCTTCAGCAGTGTCTA  1046

seq1  CTGACTTCTACCCATACTGGCCTCCTAGGTCACACCTATGCCATCCGTAC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTACCCATACTGGCCTCCTAGGTCACACCTATGCCATCCGTAC  1096

seq1  ACCGAGTTTTGCTGGCCTAAAAGTTGGGCACACTAAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTTTTGCTGGCCTAAAAGTTGGGCACACTAAGAATTC  1138

seq1: chr12_73172569_73173144
seq2: B6Ng01-224L03.g_67_642

seq1  GAATTCATATTGATAGTGAGGATGATGATGATCCAAGGGCCACATTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTGATAGTGAGGATGATGATGATCCAAGGGCCACATTTGGA  50

seq1  AAATCACTGCTGGAACAAATTTGTTTCAGTAGACTCCTTGCTCACATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTGCTGGAACAAATTTGTTTCAGTAGACTCCTTGCTCACATTGA  100

seq1  ACATTCCTGAGGTTGGGCTTCCCGCTTAAGCCTGTTTCTGAACAGGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTGAGGTTGGGCTTCCCGCTTAAGCCTGTTTCTGAACAGGTGTT  150

seq1  CTCAAGGACTGGAATGTGGATCTAGGAAGGAAGATGTCATTACTGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGACTGGAATGTGGATCTAGGAAGGAAGATGTCATTACTGTTCAA  200

seq1  GGGCCGGGGCTTTGGATGGTAACTAGTTAAGTGCATTTAAAGGTTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGGGGCTTTGGATGGTAACTAGTTAAGTGCATTTAAAGGTTTCTCA  250

seq1  GAATCAGCCTTACAGCGTCTGGGCTAGATCATCACGTTTGTGTTCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCCTTACAGCGTCTGGGCTAGATCATCACGTTTGTGTTCTTTGT  300

seq1  TGGTAGGGGCTGTTCCATTCGAGGATGATTGACAGTATTTTTGTATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGGCTGTTCCATTCGAGGATGATTGACAGTATTTTTGTATCCAC  350

seq1  CATTGGATGGCAGCAGCTGCAACAACCCAAATAAACAGCAAATAAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGATGGCAGCAGCTGCAACAACCCAAATAAACAGCAAATAAAAGAC  400

seq1  CCTGCCCCATAAGACTTTAAGTCTTAGGAAAACACAAATACATTACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCATAAGACTTTAAGTCTTAGGAAAACACAAATACATTACAAGA  450

seq1  TGAGTGTTTTATTTTAATAGGAAATTCAATGGAGATCGTTGCTAGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTTATTTTAATAGGAAATTCAATGGAGATCGTTGCTAGAGGAG  500

seq1  TAGATAAAAACTTTTTATGCCAAACCACATTGGACTATTGGGGTCCGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAAACTTTTTATGCCAAACCACATTGGACTATTGGGGTCCGGGT  550

seq1  GGGGGTGGGGAGCAGAGGAGGAGAAG  576
      ||||||||||||||||||||||||||
seq2  GGGGGTGGGGAGCAGAGGAGGAGAAG  576