BAC Information

Click to search

BAC

Clone NameB6Ng01-225C02
Chromosome12 (Build37)
Map Location 39,170,291 - 39,171,433
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneLOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225C02.bB6Ng01-225C02.g
ACCGA039401GA039402
length1,1981,136
definitionB6Ng01-225C02.b B6Ng01-225C02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagcccaatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatccgttggtggcctt
tttgtcttattgactgtgtcttttgccttacaaaagctttgcagttttat
gaggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgaggattttccgcact
ttctcctctataagtttcactgtctctcgttttatgtggagttccttgat
ccacttagatttgacagtacgacaagatagaaatggatcaattcgcattc
ttctacatgatagccaccagttgtgtcagcaccatttgttgaaaatgctg
tctttttccactggatggttttaggtcccttgtcaaaaatcaagtaacca
taggtgtgtgggttaatttctgggtcttcaattctattgcattggtctac
ttgtctgtcactataccagtaccatgcagtttttatcacaattgctctgt
aatacagctttaggtcaggcatggtgattccaccagaggttctttaatca
ttgagaagagtttttgctatcctatttttttgttattccagatgaatttg
cagattgccctttctaattcgttgaagaattgagttggagatttgatggg
gattacatagaatctgcagattgcttttggcaagatagccattttttact
atattgatcccgccaatccatgagcatggggagatctttcccatcttctt
gagatcttctttaatttcttttctttcagagaccttgaagttcttattca
tacagatcttttcacttccttagttagagtcatgccaaggtatttttata
tacttgtgactattgaagaagggtgttggtttccctaaattttttctcaa
cctgtttatcctttgtgtagagaaacgtcattgacttggttgatgtaaat
tttatatcagctacttcattgagctgttatgcaggttaaggagttcattg
gtgctattttagctcactaataatctatcatatcactctgcaatggtaat
ctcgacttcttccattccaacttggtatcccttggtatcatcctcttg

gaattctcaccagaaataaacgtgaaacacaggctaaagttcaccagtgg
gtgtgtgcccatgtgtattaatgtacttatgtgcatctgtgggtcaatgt
ggtcatgcgtgtctatgtgtgtctctgtgtgtgtgcatgtaattgtgtat
gtgcaagtgtgtgtttgtgactgtgggtgcttgtgttcatgagtgtgtac
ctgtgtgcacatgtgcatgtgtgcacatgtgtgtgtttgactcggagttt
taaaccattgagtaagtggtaatcaattcattttctatcagtgagtgaca
agttagagttgggatattctggccaaataaaagaattagctttgttaaat
gtaaatgaaatcattgaaaaaagtttggatgacatcatatgttaattagt
ttaagataaccttttctatgacaggtactggctgacaatatctttgtgaa
aagctttattcactgaatgagaattcaagcagaagtccaactgttcctgg
tagcccctcctttccctctggctttaaagtttgaatgcaataccttttgc
tcagtagttttcaaacctttgattacagccaacatcttgcaaatgaagca
atatttaaaaatgtataagtgtgaaaagccatactactttgtataaatac
aaggagttcgaattttggacttttaaattgctaataatttcaaggtagtc
agcctctaacatttttgacaatgctttgatgaattgtgggaatatcatag
ctttttactttttcattttttatattttattatggtagcatgatgttgag
acttccctgataggcagatatgtaatgaaactacataaatttcctatgtt
cttccttagagatctgtaataactaacaatatcttactggtaaattgcat
gactgtctctttccattcaaactaaatctactagaaataaaatgactcag
ttctttgtgaaatcctcatacttgagttaaaaaatgccttccaagtgcat
ttaatatttcatatgtatactatttgatatcatatcagtagaataagggg
aaatgtttgccataactactccctcccatcttaactgttgcttgattaag
atgccttaatgtgaatgcttcacctctgtcatacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39170291_39171433
seq2: B6Ng01-225C02.g_62_1197 (reverse)

seq1  TTGTATGGACAGAGGTGGAAACCAATCACATTTAAAGGGCATCTTTAACC  50
      |||||| ||||||||||  || || |||||||   | |||||||| | | 
seq2  TTGTAT-GACAGAGGTG--AAGCATTCACATT---AAGGCATCTTAATCA  44

seq1  AGC-ACAG-TAAGATGGGAGGGAGTAGGTTATGGCAAACA-TTCCCCT--  95
      ||| |||| ||||||||||||||||| ||||||||||||| |||||||  
seq2  AGCAACAGTTAAGATGGGAGGGAGTA-GTTATGGCAAACATTTCCCCTTA  93

seq1  ATCTACTGATATGATATTCAAATAGTATACATATGAAAATATTAAAATGC  145
       ||||||||||||||| |||||||||||||||||| ||||||| ||||||
seq2  TTCTACTGATATGATA-TCAAATAGTATACATATG-AAATATT-AAATGC  140

seq1  ACCTTTGGAAGGCATTTTTTAACTCAAGTATGAGGATTTCACAAAGAACT  195
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC--TTGGAAGGCATTTTTTAACTCAAGTATGAGGATTTCACAAAGAACT  188

seq1  GAGTCATTTTATTTCTAGTAGATTTAGTTTGAATGGAAAGAGACAGTCAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTTTATTTCTAGTAGATTTAGTTTGAATGGAAAGAGACAGTCAT  238

seq1  GCAATTTACCAGTAAGATATTGTTAGTTATTACAGATCTCTAAGGAAGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTACCAGTAAGATATTGTTAGTTATTACAGATCTCTAAGGAAGAA  288

seq1  CATAGGAAATTTATGTAGTTTCATTACATATCTGCCTATCAGGGAAGTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAAATTTATGTAGTTTCATTACATATCTGCCTATCAGGGAAGTCT  338

seq1  CAACATCATGCTACCATAATAAAATATAAAAAATGAAAAAGTAAAAAGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCATGCTACCATAATAAAATATAAAAAATGAAAAAGTAAAAAGCT  388

seq1  ATGATATTCCCACAATTCATCAAAGCATTGTCAAAAATGTTAGAGGCTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTCCCACAATTCATCAAAGCATTGTCAAAAATGTTAGAGGCTGA  438

seq1  CTACCTTGAAATTATTAGCAATTTAAAAGTCCAAAATTCGAACTCCTTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGAAATTATTAGCAATTTAAAAGTCCAAAATTCGAACTCCTTGT  488

seq1  ATTTATACAAAGTAGTATGGCTTTTCACACTTATACATTTTTAAATATTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACAAAGTAGTATGGCTTTTCACACTTATACATTTTTAAATATTG  538

seq1  CTTCATTTGCAAGATGTTGGCTGTAATCAAAGGTTTGAAAACTACTGAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGCAAGATGTTGGCTGTAATCAAAGGTTTGAAAACTACTGAGC  588

seq1  AAAAGGTATTGCATTCAAACTTTAAAGCCAGAGGGAAAGGAGGGGCTACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTATTGCATTCAAACTTTAAAGCCAGAGGGAAAGGAGGGGCTACC  638

seq1  AGGAACAGTTGGACTTCTGCTTGAATTCTCATTCAGTGAATAAAGCTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGTTGGACTTCTGCTTGAATTCTCATTCAGTGAATAAAGCTTTT  688

seq1  CACAAAGATATTGTCAGCCAGTACCTGTCATAGAAAAGGTTATCTTAAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGATATTGTCAGCCAGTACCTGTCATAGAAAAGGTTATCTTAAAC  738

seq1  TAATTAACATATGATGTCATCCAAACTTTTTTCAATGATTTCATTTACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACATATGATGTCATCCAAACTTTTTTCAATGATTTCATTTACAT  788

seq1  TTAACAAAGCTAATTCTTTTATTTGGCCAGAATATCCCAACTCTAACTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAGCTAATTCTTTTATTTGGCCAGAATATCCCAACTCTAACTTG  838

seq1  TCACTCACTGATAGAAAATGAATTGATTACCACTTACTCAATGGTTTAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACTGATAGAAAATGAATTGATTACCACTTACTCAATGGTTTAAA  888

seq1  ACTCCGAGTCAAACACACACATGTGCACACATGCACATGTGCACACAGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGAGTCAAACACACACATGTGCACACATGCACATGTGCACACAGGT  938

seq1  ACACACTCATGAACACAAGCACCCACAGTCACAAACACACACTTGCACAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCATGAACACAAGCACCCACAGTCACAAACACACACTTGCACAT  988

seq1  ACACAATTACATGCACACACACAGAGACACACATAGACACGCATGACCAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTACATGCACACACACAGAGACACACATAGACACGCATGACCAC  1038

seq1  ATTGACCCACAGATGCACATAAGTACATTAATACACATGGGCACACACCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCCACAGATGCACATAAGTACATTAATACACATGGGCACACACCC  1088

seq1  ACTGGTGAACTTTAGCCTGTGTTTCACGTTTATTTCTGGTGAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGAACTTTAGCCTGTGTTTCACGTTTATTTCTGGTGAGAATTC  1136


| Home | SequenceCutter | Blast | Download |