BAC Information

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BAC

Clone NameB6Ng01-225G07
Chromosome12 (Build37)
Map Location 36,779,163 - 36,780,203
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13
Downstream geneEG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225G07.bB6Ng01-225G07.g
ACCGA039601GA039602
length1,2401,039
definitionB6Ng01-225G07.b B6Ng01-225G07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaagtccaggaagtggtccaaataagagatcaaaagccccacaa
actctagggaaactgatttcaccaagatccagcctgctgggggaggataa
aagtacttggtagtttttaaagattctttttctggataggtagaaacatc
ctctacccaggctgaagctgcttaaataggagctaagatgatcctctaga
aattgatcccctaaaagaaagaaaggaaaggaaaagaaaagaaaagaaaa
gaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa
gaaactgttcccctaacatagcctctcccttaacaattggggttagcagc
ctgactttcatagtcaaaacctctcaattaatatctaaagccttagacat
acattgaaaacttcattgtgcatgtagacctcagggttctggccaggtaa
aaagaataaacaggacattaaaagaaactttaacaaaactctcattagag
tctgccagagggtagatagatctccttcctttgctttagcccactggtcc
ccataccagtggatttatgttctccttgagattatgtttggaagaccttc
cccaggctcagacaccagcagttggcagaactctctaaccgttcctttct
caagttaccataggtactccagtcttccataaaggctgtccattggtgta
ttcaagagagccagctgacctcctaatccatcaccagttttcctttgtcc
cagcccagtgacattgtctgtgtcaggcagatagccaacagggcactgaa
atcaactagaaagggactctacactgtgattctctccaatcctaaggctg
tgaagatatctggcattacagatatcattacaggttaagaaagaagaagc
catagatgctgctgccaaataaaccatctccagacttaaaattaaaggtt
tcaatgagccctgggcccttacactccctgcccctctactttctcctgag
acttgtgtttaatataatacaggggtatggtccgaccctcagggccttca
agtttggacctaggaattgaagaagtcagctccagaagaacgtataacta
ggtatgactgtggaccagaaatcatatttccacttgactttaccttattg
accccttactttaagttagttggtgtatgaaggaaagggagagaacgcgc
aattatatatattatgtgggaattccacgtaacttagcga
gaattcttgattctcagtggggctttccccagactttgggtgaagggtcc
ctttctcttcccaggtcgtcataattgtctgtattatcatgactcgctat
gtacattttgcccagtagaatacagaagaagagatgcagagtctgttgat
cagacactgatacactgattgaggacttttttttttttttggcagtttcc
ccttgtgccttagcattatgtaggaaacccaacatcctcaatggagagat
cgtacagagagggttagccaaagccacaccattttgaatagtcctgacag
tttcttgaaactatagggatagcattctatacttgctttcctcaattcct
tgtcacatacccagagagccccccgcccccaccataagaaatgtctatca
tgggatattctttaccactgttctctctttggggatcactcctagccaca
gccaatccttgccttcagaagaaagttttcaatgtcctttctctcccctc
cattctgtgttttaattaccccaacttgtaagtccacagcagactctagc
tcttccagagacccacccatctgcagggctgttccccacataagggactc
aagtgtttgttgctctgtcccttgtttgtctgcctttctattatcttact
gagaggtcttgagaacatatggaatgtatattgtgacagttcccactagg
gaaagtttgaccctccacaccagcctggatgccacttgaattgtcccctc
ctagtactctgataggtagtagaagaaccacatagccaagtgttactgaa
aatcaagagctttcatagaagaattatggtttaagctgtatatttagagg
tcagtgtaatatagagataaataatgagacttccccaaatttatagagta
ttacatatagagattgtgcttccaatttgtaaggcagaaagaagatgtga
atgttaagaattacaggggatgtgactggggatgtctctcattggtagaa
gtacatatgcaaagtactaggtatatccctgatacaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36779163_36780203
seq2: B6Ng01-225G07.g_61_1099 (reverse)

seq1  TATTGTATTAGGGATTAAACCTAGTACTTTGCATATGTAC-TCTACCACT  49
      |||||||| ||||| || |||||||||||||||||||||| ||||||| |
seq2  TATTGTATCAGGGA-TATACCTAGTACTTTGCATATGTACTTCTACCAAT  49

seq1  GAGAGACATCCCCAGTCACATCCCCTTTAATTCTTAACATTCACATCTTC  99
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGAGACATCCCCAGTCACATCCCCTGTAATTCTTAACATTCACATCTTC  99

seq1  TTTCTGCCTTACAATTTGAAGCCACAATCTCTATATGTAATACTCTATAA  149
      |||||||||||||| ||| |  ||||||||||||||||||||||||||||
seq2  TTTCTGCCTTACAAATTGGAAGCACAATCTCTATATGTAATACTCTATAA  149

seq1  ATTTGGGGAAGTCTCATTATTTATCTCTATATTACACTGACCTCTAAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGAAGTCTCATTATTTATCTCTATATTACACTGACCTCTAAATA  199

seq1  TAACAGCTTAAAACCATAATTCTTCTATGAAAGCTCTTGATTTTCAGTAA  249
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  T-ACAGCTT-AAACCATAATTCTTCTATGAAAGCTCTTGATTTTCAGTAA  247

seq1  CACTTGGCTATGTGGTTCTTCTACTACCTATCAGAGTACTAGGAGGGGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCTATGTGGTTCTTCTACTACCTATCAGAGTACTAGGAGGGGAC  297

seq1  AATTCAAGTGGCATCCAGGCTGGTGTGGAGGGTCAAACCTTCCCTAGTGG  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTCAAGTGGCATCCAGGCTGGTGTGGAGGGTCAAACTTTCCCTAGTGG  347

seq1  GAACTGTCACAATATACATTCCATATGTTCTCAAGACCTCTCAGTAAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCACAATATACATTCCATATGTTCTCAAGACCTCTCAGTAAGAT  397

seq1  AATAGAAAGGCAGACAAACAAGGGACAGAGCAACAAACACTTGAGTCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGGCAGACAAACAAGGGACAGAGCAACAAACACTTGAGTCCCT  447

seq1  TATGTGGGGAACAGCCCTGCAGATGGGTGGGTCTCTGGAAGAGCTAGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGGAACAGCCCTGCAGATGGGTGGGTCTCTGGAAGAGCTAGAGT  497

seq1  CTGCTGTGGACTTACAAGTTGGGGTAATTAAAACACAGAATGGAGGGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGGACTTACAAGTTGGGGTAATTAAAACACAGAATGGAGGGGAG  547

seq1  AGAAAGGACATTGAAAACTTTCTTCTGAAGGCAAGGATTGGCTGTGGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGACATTGAAAACTTTCTTCTGAAGGCAAGGATTGGCTGTGGCTA  597

seq1  GGAGTGATCCCCAAAGAGAGAACAGTGGTAAAGAATATCCCATGATAGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGATCCCCAAAGAGAGAACAGTGGTAAAGAATATCCCATGATAGAC  647

seq1  ATTTCTTATGGTGGGGGCGGGGGGCTCTCTGGGTATGTGACAAGGAATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATGGTGGGGGCGGGGGGCTCTCTGGGTATGTGACAAGGAATTG  697

seq1  AGGAAAGCAAGTATAGAATGCTATCACTATAGTTTCAAGAAACTGTCAGG  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAAAGCAAGTATAGAATGCTATCCCTATAGTTTCAAGAAACTGTCAGG  747

seq1  ACTATTCAAAATGGTGTGGCTTTGGCTAACCCTCTCTGTACGATCTCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCAAAATGGTGTGGCTTTGGCTAACCCTCTCTGTACGATCTCTCC  797

seq1  ATTGAGGATGTTGGGTTTCCTACATAATGCTAAGGCACAAGGGGAAACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGATGTTGGGTTTCCTACATAATGCTAAGGCACAAGGGGAAACTG  847

seq1  CCAAAAAAAAAAAAAAGTCCTCAATCAGTGTATCAGTGTCTGATCAACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAAAAAGTCCTCAATCAGTGTATCAGTGTCTGATCAACAG  897

seq1  ACTCTGCATCTCTTCTTCTGTATTCTACTGGGCAAAATGTACATAGCGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCATCTCTTCTTCTGTATTCTACTGGGCAAAATGTACATAGCGAG  947

seq1  TCATGATAATACAGACAATTATGACGACCTGGGAAGAGAAAGGGACCCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATAATACAGACAATTATGACGACCTGGGAAGAGAAAGGGACCCTT  997

seq1  CACCCAAAGTCTGGGGAAAGCCCCACTGAGAATCAAGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAGTCTGGGGAAAGCCCCACTGAGAATCAAGAATTC  1039