BAC Information

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BAC

Clone NameB6Ng01-226C14
Chromosome12 (Build37)
Map Location 72,471,459 - 72,613,691
singlet/doubletdoublet
Overlap geneLOC100041190
Upstream geneTxndc1, LOC100040965, LOC100041061, Frmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1
Downstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226C14.bB6Ng01-226C14.g
ACCGA040172GA040173
length9391,103
definitionB6Ng01-226C14.b B6Ng01-226C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,612,754 - 72,613,691)(72,471,459 - 72,472,550)
sequence
gaattctttcccaatgagggggaaggggtgggcaaagagacttgatgacc
ttcttttcagacaaatagatctgtacctataacttttctggagccaaaaa
ggtcaagggtgaaagacccagaggaacagatcaaatcaaggggtatagac
taattaaagactacagcaatgtgcatgctgtatagacactattgtttcca
agacataagaaacagcattatatgtgacatcaaaggaagccagatttctg
tgtgttattttgttgctgaaggatgtttttgaaacaaagggttaacagcc
gcatggcccagcctaattttctgagggttgcctttaaaacatttatctct
gcctcttaaagattcatcatattaaaggacccaacggacaaacaggcaac
gtaaagttcacgagcaaagcattcctaaatatggtcatgtaattaattct
taagttttgtgaaatctctgcataaaacacagaattctgagactttagag
attaaccagtcaaacgattcttaagtagtaatgctcaaattcttttccac
taaaaataaaaaaacatgcatcaattgtgatgccaacatttatgaggtcc
tgggttcaatctcaaacaacaggtgaagcattcatcctctaaaagcctcg
ggtgaagagaaacattctggacaggaaagttgacttcactggcaacatct
gtaggctgttaatgtcttagttactccttcattgctatgaagaaacatct
tgaccaagataactcttataaaagaaagatttaatttaattgggagtctt
gcttaaacttttagaggactagtccatgaacatcaaggtgggatgcagac
aggaatggtgctggatcaatagctgagagccttacatactgatccgcagg
cagcagggagggaaagagagagggggggagggaagagaa
gaattcaggtctgtaaaagctgggggtagggtgggggtgcctctcatcca
aaccgtcatacctgggtatctttaaaataaagtgacctgccatctctttt
gctctgacttccaccatcagatcatggctgctgggtgtacttttcttttt
ctttctcaattcccactttcctttcttcacctcatcacactcaccaagag
taagaagtgtattctcaagatgcccttcatggccaccatggcgacaacac
agatttttgtctccagtgttatgtgtgcagttgaacacagctcttcccag
aagacttatggatatctggaattttgcactagagaagctcactttgatat
cttgaacatctgaaagggacagaaaagaagaaggaaggacagtgagacag
ctatatttcttatttaaagtcaggggagtcactttaaagagaccttcctt
ttcctcccaataaggttgtaaaaaagtggaattctaagctaattctacta
cattgtattctgcaatatagtcaataaaattcagaaatgggttttcatat
aatgtttataaagatggattagaagggaattttagatcaaattgtagtat
aagactctctccctccatcttccattgctgtttttccctgaatttaaaag
agattattttattttatttctttctaataattttatggcacttagggtaa
gtttcaaaaaattataaaagattttgttagtatatttcctttaggccatt
tatgttcatatttgtcttaacaatgccaatttaaactttctataacaatg
tttacaagttgtatgtaatgctacaaaaatttaattcaaagaagactggt
taaatataggcgagactacacatatatttatgttctaattctctagaaag
tccaataagatgagatgattagtagcaaattaaaaagtgtaacccctgag
ccctggtgttgtcaatatatacctatagttccttgggcaggtagacacag
aaaggatgctgccaagttttgatgccaacaaggccacattagtgtgttcg
aaggcctagcttgagctatctagggagaactcttacgatttaaaaaaaaa
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_72612754_72613691
seq2: B6Ng01-226C14.b_50_988 (reverse)

seq1  TTCTCTTCCCT-CCCCCCTCTCTCTTTCCCTCCCTGCTGCCTGCGGATCA  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCCTCCCCCCCTCTCTCTTTCCCTCCCTGCTGCCTGCGGATCA  50

seq1  GTATGTAAGGCTCTCAGCTATTGATCCAGCACCATTCCTGTCTGCATCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAGGCTCTCAGCTATTGATCCAGCACCATTCCTGTCTGCATCCC  100

seq1  ACCTTGATGTTCATGGACTAGTCCTCTAAAAGTTTAAGCAAGACTCCCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATGTTCATGGACTAGTCCTCTAAAAGTTTAAGCAAGACTCCCAA  150

seq1  TTAAATTAAATCTTTCTTTTATAAGAGTTATCTTGGTCAAGATGTTTCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAAATCTTTCTTTTATAAGAGTTATCTTGGTCAAGATGTTTCTT  200

seq1  CATAGCAATGAAGGAGTAACTAAGACATTAACAGCCTACAGATGTTGCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAATGAAGGAGTAACTAAGACATTAACAGCCTACAGATGTTGCCA  250

seq1  GTGAAGTCAACTTTCCTGTCCAGAATGTTTCTCTTCACCCGAGGCTTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCAACTTTCCTGTCCAGAATGTTTCTCTTCACCCGAGGCTTTTA  300

seq1  GAGGATGAATGCTTCACCTGTTGTTTGAGATTGAACCCAGGACCTCATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAATGCTTCACCTGTTGTTTGAGATTGAACCCAGGACCTCATAA  350

seq1  ATGTTGGCATCACAATTGATGCATGTTTTTTTATTTTTAGTGGAAAAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCATCACAATTGATGCATGTTTTTTTATTTTTAGTGGAAAAGAA  400

seq1  TTTGAGCATTACTACTTAAGAATCGTTTGACTGGTTAATCTCTAAAGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCATTACTACTTAAGAATCGTTTGACTGGTTAATCTCTAAAGTCT  450

seq1  CAGAATTCTGTGTTTTATGCAGAGATTTCACAAAACTTAAGAATTAATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTGTGTTTTATGCAGAGATTTCACAAAACTTAAGAATTAATTA  500

seq1  CATGACCATATTTAGGAATGCTTTGCTCGTGAACTTTACGTTGCCTGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCATATTTAGGAATGCTTTGCTCGTGAACTTTACGTTGCCTGTTT  550

seq1  GTCCGTTGGGTCCTTTAATATGATGAATCTTTAAGAGGCAGAGATAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTGGGTCCTTTAATATGATGAATCTTTAAGAGGCAGAGATAAATG  600

seq1  TTTTAAAGGCAACCCTCAGAAAATTAGGCTGGGCCATGCGGCTGTTAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGCAACCCTCAGAAAATTAGGCTGGGCCATGCGGCTGTTAACC  650

seq1  CTTTGTTTCAAAAACATCCTTCAGCAACAAAATAACACACAGAAATCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTCAAAAACATCCTTCAGCAACAAAATAACACACAGAAATCTGG  700

seq1  CTTCCTTTGATGTCACATATAATGCTGTTTCTTATGTCTTGGAAACAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTGATGTCACATATAATGCTGTTTCTTATGTCTTGGAAACAATA  750

seq1  GTGTCTATACAGCATGCACATTGCTGTAGTCTTTAATTAGTCTATACCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATACAGCATGCACATTGCTGTAGTCTTTAATTAGTCTATACCCC  800

seq1  TTGATTTGATCTGTTCCTCTGGGTCTTTCACCCTTGACCTTTTTGGCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGATCTGTTCCTCTGGGTCTTTCACCCTTGACCTTTTTGGCTCC  850

seq1  AGAAAAGTTATAGGTACAGATCTATTTGTCTGAAAAGAAGGTCATCAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTATAGGTACAGATCTATTTGTCTGAAAAGAAGGTCATCAAGT  900

seq1  CTCTTTGCCCACCCCTTCCCCCTCATTGGGAAAGAATTC  938
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCCCACCCCTTCCCCCTCATTGGGAAAGAATTC  939

seq1: chr12_72471459_72472550
seq2: B6Ng01-226C14.g_68_1170

seq1  GAATTCAGGTCTGTAAAAGCTGGGGGTAGGGTGGGGGTGCCTCTCATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCTGTAAAAGCTGGGGGTAGGGTGGGGGTGCCTCTCATCCA  50

seq1  AACCGTCATACCTGGGTATCTTTAAAATAAAGTGACCTGCCATCTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTCATACCTGGGTATCTTTAAAATAAAGTGACCTGCCATCTCTTTT  100

seq1  GCTCTGACTTCCACCATCAGATCATGGCTGCTGGGTGTACTTTTCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACTTCCACCATCAGATCATGGCTGCTGGGTGTACTTTTCTTTTT  150

seq1  CTTTCTCAATTCCCACTTTCCTTTCTTCACCTCATCACACTCACCAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAATTCCCACTTTCCTTTCTTCACCTCATCACACTCACCAAGAG  200

seq1  TAAGAAGTGTATTCTCAAGATGCCCTTCATGGCCACCATGGCGACAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTGTATTCTCAAGATGCCCTTCATGGCCACCATGGCGACAACAC  250

seq1  AGATTTTTGTCTCCAGTGTTATGTGTGCAGTTGAACACAGCTCTTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGTCTCCAGTGTTATGTGTGCAGTTGAACACAGCTCTTCCCAG  300

seq1  AAGACTTATGGATATCTGGAATTTTGCACTAGAGAAGCTCACTTTGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTATGGATATCTGGAATTTTGCACTAGAGAAGCTCACTTTGATAT  350

seq1  CTTGAACATCTGAAAGGGACAGAAAAGAAGAAGGAAGGACAGTGAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACATCTGAAAGGGACAGAAAAGAAGAAGGAAGGACAGTGAGACAG  400

seq1  CTATATTTCTTATTTAAAGTCAGGGGAGTCACTTTAAAGAGACCTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTCTTATTTAAAGTCAGGGGAGTCACTTTAAAGAGACCTTCCTT  450

seq1  TTCCTCCCAATAAGGTTGTAAAAAAGTGGAATTCTAAGCTAATTCTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCAATAAGGTTGTAAAAAAGTGGAATTCTAAGCTAATTCTACTA  500

seq1  CATTGTATTCTGCAATATAGTCAATAAAATTCAGAAATGGGTTTTCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATTCTGCAATATAGTCAATAAAATTCAGAAATGGGTTTTCATAT  550

seq1  AATGTTTATAAAGATGGATTAGAAGGGAATTTTAGATCAAATTGTAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATAAAGATGGATTAGAAGGGAATTTTAGATCAAATTGTAGTAT  600

seq1  AAGACTCTCTCCCTCCATCTTCCATTGCTGTTTTTCCCTGAATTTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCTCCCTCCATCTTCCATTGCTGTTTTTCCCTGAATTTAAAAG  650

seq1  AGATTATTTTATTTTATTTCTTTCTAATAATTTTATGGCACTTAGGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTATTTTATTTCTTTCTAATAATTTTATGGCACTTAGGGTAA  700

seq1  GTTTCAAAAAATTATAAAAGATTTTGTTAGTATATTTCCTTTAGGCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAAAATTATAAAAGATTTTGTTAGTATATTTCCTTTAGGCCATT  750

seq1  TATGTTCATATTTGTCTTAACAATGCCAATTTAAACTTTCTATAACAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATATTTGTCTTAACAATGCCAATTTAAACTTTCTATAACAATG  800

seq1  -TTACAAGTTGTATGTAATGCTACAAAAAATTAATTCAAAGAAGACTGGT  849
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTACAAGTTGTATGTAATGCTACAAAAATTTAATTCAAAGAAGACTGGT  850

seq1  TAAATATAGGCGAGACTTACACATATATTTATGTTCTATTTCTCTAGAAA  899
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  TAAATATAGGCGAGAC-TACACATATATTTATGTTCTAATTCTCTAGAAA  899

seq1  GTCCAATGAGATGAGATGATTAGTAGCAATTTAAAAAGTGTAA-CCCTGA  948
      ||||||| ||||||||||||||||||||| ||||||||||||| ||||||
seq2  GTCCAATAAGATGAGATGATTAGTAGCAAATTAAAAAGTGTAACCCCTGA  949

seq1  G-CCTGGTG-TGTCAATATATACCTATAG-TCCTT-GGCAGGTAGACACA  994
      | ||||||| ||||||||||||||||||| ||||| ||||||||||||||
seq2  GCCCTGGTGTTGTCAATATATACCTATAGTTCCTTGGGCAGGTAGACACA  999

seq1  GAAAGATTGTTG-CAAG-TTTGATGCCAACAAAGGCCACA-TAGTGTGTT  1041
      |||||  || || |||| |||||||||||| ||||||||| |||||||||
seq2  GAAAGGATGCTGCCAAGTTTTGATGCCAAC-AAGGCCACATTAGTGTGTT  1048

seq1  CG-AGGCC-AGCTTGAGCTATCTAGGGAGAA--CTTACGATTAAAAAAAA  1087
      || ||||| ||||||||||||||||||||||  ||||||||| |||||||
seq2  CGAAGGCCTAGCTTGAGCTATCTAGGGAGAACTCTTACGATTTAAAAAAA  1098

seq1  AAAAA  1092
      |||||
seq2  AAAAA  1103