BAC Information

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BAC

Clone NameB6Ng01-226C16
Chromosome12 (Build37)
Map Location 47,602,290 - 47,804,170
singlet/doubletdoublet
Overlap geneNova1
Upstream geneLOC664952
Downstream geneLOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226C16.bB6Ng01-226C16.g
ACCGA040176GA040177
length1,2031,183
definitionB6Ng01-226C16.b B6Ng01-226C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,602,290 - 47,603,498)(47,802,990 - 47,804,170)
sequence
gaattctctatcttcagtcgctttacaatcacacatctccatatattaag
aaccatcataagagcatatgcagaatggaagggatctgtaactagaaaaa
aaaaaggttccctttccaaaggatcatttgactgaaaaatgcttaaaatg
tccattctcagcatcatggcccagttccttgctaatgcaggaggcattcc
gtgctggtgggtgttgggaactagattgtttctctaaaatccatgtctgg
ggtctttgcgcctatgcccaggtaattctggatgccattctgtttacaga
tagagttgcacagaagtaacgaagaaagcagtccttaggggaggactcta
gtgcctggtgtccttatagcaagagacgtttagcagatacatttgcagaa
gggaatgctttgtaatgacgtatggggggagggggaagccaccatatgcc
aaagacagttgatttgggcaaaactgatcagcagatgcacagacctgagc
tcagagcactagcttctagaacttctgggaatttctgttgttctcatctc
cccagtgtagtcacttgccattgcagccttagccaactggtaccctacca
aatgtcagaacagccagttcttggtttctcaaggccagcatttgagaggt
tacccagcttcttcatttctccgtttcgatttttcactaatgtagttaat
agtatttaaaaggaaactaggtttggcatgggacttgggggacagaggta
gcttaagcaagatctatgtcttttgtctcctttaatccttccaagagaaa
gttaaattttctcttgctccgtctatggtacttaatttgttaaactcttg
ctcaagactataaatgctttaaaaatatatgtttaatgtattttgtgtct
ctataggttttcacacagtatatgggagtggatgcctgggaagagccttg
gggcagcaactgacatacaccagcacatagcaaaatgtgataggtaccta
gaggaacagtctggtaatccaaaggatccctgaaaatgtaaattattttc
aatgccttacttgaggaggaatgaaattaaagtgactttttctgaggtta
cataatttgtcctggaaaggacacctacagtcagatccttcttcctggtt
gcccagccttaagactaagctctgaagtgtaatccaccctcatcatgacc
atg

gaattcacagctaaactgtggactgagtatggggtttttatgactccaga
tgatagacacaaaatgctagagtcgaagcacactctagcgtagtgtacag
tctgtagcgcctccgcctagttcagtgcagagtcttactggggagcctta
ctgaaggatttgaaaagggttttggtttggtttggtttggtttttttttc
caggatttttgtatgtgtgataaatcttaacatagacattatccacaaaa
aaaaaagaatgtttcagaaggaaagcaaaatactgttaagtcaaataatt
ctagaataagttctatttcatctttataattgcctaaggtagaattaggg
ttagaattataattataattcttttttattagatgttttcttcatttaca
tttcaaatgctatcccctttcctagtttcctctccaaaaatcccctatac
tctcctccctctccctgcttcccaacccacccactcccacttctttgcct
tggcattcccctatactggcgcatagaatcttcgcaagaccaaggatctc
tcctcctagtgatggccgactaggctgtcctctgctacatatgcagctgg
agattctttaaagacaaatgattttcctggaaaactctactaaaattaat
aactgttaaaatatcctcccaaaagcctccataaaataaaactaacttag
gcagcaactttgaatatatttgccaattctaagaagtggttttaaatttg
tgttttatagcttccaaaatttagctattattatcacaggactaaataaa
attagaataaaaaactattttatatgttcaaaccaaataaagagtgtgtg
taagatgtagaaatgcactcacatgtgcccagcctggagcatggattttg
tgttcattgcctgctttcctttcaagagcagaatggccagacctcaccaa
ctgctctttaaaatgtcactttgcagattttggttctaagatagcattgg
tgaatacttgcttcaattagctaatgcatacaaaaaaaattcaaattacg
aagctaaacttgcactccgatgttagagatgaatttagccaccctagtct
acaatctgtggcctcatgagagtggagatggctacttccaggcgttcatg
aactgcagttgcagttgatagacccaggtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47602290_47603498
seq2: B6Ng01-226C16.b_45_1247

seq1  GAATTCTCTATCTTCAGTCGCTTTACAATCACACATCTCCATATATTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATCTTCAGTCGCTTTACAATCACACATCTCCATATATTAAG  50

seq1  AACCATCATAAGAGCATATGCAGAATGGAAGGGATCTGTAACTAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCATAAGAGCATATGCAGAATGGAAGGGATCTGTAACTAGAAAAA  100

seq1  AAAAAGGTTCCCTTTCCAAAGGATCATTTGACTGAAAAATGCTTAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTTCCCTTTCCAAAGGATCATTTGACTGAAAAATGCTTAAAATG  150

seq1  TCCATTCTCAGCATCATGGCCCAGTTCCTTGCTAATGCAGGAGGCATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTCAGCATCATGGCCCAGTTCCTTGCTAATGCAGGAGGCATTCC  200

seq1  GTGCTGGTGGGTGTTGGGAACTAGATTGTTTCTCTAAAATCCATGTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGTGGGTGTTGGGAACTAGATTGTTTCTCTAAAATCCATGTCTGG  250

seq1  GGTCTTTGCGCCTATGCCCAGGTAATTCTGGATGCCATTCTGTTTACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGCGCCTATGCCCAGGTAATTCTGGATGCCATTCTGTTTACAGA  300

seq1  TAGAGTTGCACAGAAGTAACGAAGAAAGCAGTCCTTAGGGGAGGACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTGCACAGAAGTAACGAAGAAAGCAGTCCTTAGGGGAGGACTCTA  350

seq1  GTGCCTGGTGTCCTTATAGCAAGAGACGTTTAGCAGATACATTTGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGTGTCCTTATAGCAAGAGACGTTTAGCAGATACATTTGCAGAA  400

seq1  GGGAATGCTTTGTAATGACGTATGGGGGGAGGGGGAAGCCACCATATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGCTTTGTAATGACGTATGGGGGGAGGGGGAAGCCACCATATGCC  450

seq1  AAAGACAGTTGATTTGGGCAAAACTGATCAGCAGATGCACAGACCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGTTGATTTGGGCAAAACTGATCAGCAGATGCACAGACCTGAGC  500

seq1  TCAGAGCACTAGCTTCTAGAACTTCTGGGAATTTCTGTTGTTCTCATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCACTAGCTTCTAGAACTTCTGGGAATTTCTGTTGTTCTCATCTC  550

seq1  CCCAGTGTAGTCACTTGCCATTGCAGCCTTAGCCAACTGGTACCCTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTAGTCACTTGCCATTGCAGCCTTAGCCAACTGGTACCCTACCA  600

seq1  AATGTCAGAACAGCCAGTTCTTGGTTTCTCAAGGCCAGCATTTGAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGAACAGCCAGTTCTTGGTTTCTCAAGGCCAGCATTTGAGAGGT  650

seq1  TACCCAGCTTCTTCATTTCTCCGTTTCGATTTTTCACTAATGTAGTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGCTTCTTCATTTCTCCGTTTCGATTTTTCACTAATGTAGTTAAT  700

seq1  AGTATTTAAAAGGAAACTAGGTTTGGCATGGGACTTGGGGGACAGAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAAAAGGAAACTAGGTTTGGCATGGGACTTGGGGGACAGAGGTA  750

seq1  GCTTAAGCAAGATCTATGTCTTTTGTCTCCTTTAATCCTTCCAAGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGCAAGATCTATGTCTTTTGTCTCCTTTAATCCTTCCAAGAGAAA  800

seq1  GTTAAATTTTCTCTTGCTCCGTCTATGGTACTTAATTTGTTAAACTCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTTTCTCTTGCTCCGTCTATGGTACTTAATTTGTTAAACTCTTG  850

seq1  CTCAAGACTATAAATGCTTTAAAAATATATG-TTAATGTATTTTGTGTCT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCAAGACTATAAATGCTTTAAAAATATATGTTTAATGTATTTTGTGTCT  900

seq1  CTATAGGTTTTCACACAGTATATGGGAGTGGATGCCT-GGAAGAGCCTT-  947
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  CTATAGGTTTTCACACAGTATATGGGAGTGGATGCCTGGGAAGAGCCTTG  950

seq1  GGGCAGC-ACTGACATACACAAGCACATAGC-AAATGTGATAGGTACCCA  995
      ||||||| |||||||||||| |||||||||| |||||||||||||||| |
seq2  GGGCAGCAACTGACATACACCAGCACATAGCAAAATGTGATAGGTACCTA  1000

seq1  GAGGAACAGTCT-GTAATCC-AAGGATCCCTGAAAATGTAAAATTATTTC  1043
      |||||||||||| ||||||| ||||||||||||||||||||| |  ||||
seq2  GAGGAACAGTCTGGTAATCCAAAGGATCCCTGAAAATGTAAATTATTTTC  1050

seq1  AATGTCTTAACTGAGGAGGAAATGAAATTAAAGTGAC-TTTTCTGAGGTT  1092
      |||| ||||  |||||||| ||||||||||||||||| ||||||||||||
seq2  AATGCCTTACTTGAGGAGG-AATGAAATTAAAGTGACTTTTTCTGAGGTT  1099

seq1  ACATTAATTTGTCTTTGAAAGGACACCCAGAAGTCAGATCCTTTCTTCCT  1142
      ||| ||||||||| | ||||||||||| |  |||||||||| ||||||||
seq2  ACA-TAATTTGTCCTGGAAAGGACACCTA-CAGTCAGATCC-TTCTTCCT  1146

seq1  GGTTGCCAAAGCATTAAAAGACACAAAAGAGTCTGAAAGTAGAAACCAGA  1192
      |||||||  ||| ||  |||||    |||  |||| ||||  || ||  |
seq2  GGTTGCC-CAGCCTT--AAGAC---TAAG-CTCTG-AAGTGTAATCC--A  1186

seq1  ACCTCATCATGACCATG  1209
       ||||||||||||||||
seq2  CCCTCATCATGACCATG  1203


seq1: chr12_47802990_47804170
seq2: B6Ng01-226C16.g_67_1249 (reverse)

seq1  CCACCCCTGGGCTCATCAAACCTGCAACTGCAGTCACTGACAGGGCACTG  50
      |||| ||||||   |||||  |||||||||||||   ||  |  ||   |
seq2  CCACACCTGGGTCTATCAA--CTGCAACTGCAGTTCATG--AACGCCTGG  46

seq1  AAGTAG-CATCTTCACTCTCAATGAGG-CACAGATGTTAGACTA-GGTGG  97
      |||||| ||||| ||||||| |||||| |||||||  ||||||| |||||
seq2  AAGTAGCCATCTCCACTCTC-ATGAGGCCACAGATTGTAGACTAGGGTGG  95

seq1  CTAAA-TCATCTCTAACATCTGAGTGCAAGTTTAGCTTCTGTATTTGAAT  146
      ||||| |||||||||||||| ||||||||||||||||||   ||||||||
seq2  CTAAATTCATCTCTAACATCGGAGTGCAAGTTTAGCTTCGTAATTTGAAT  145

seq1  TTTTTTTGTAATGCATTAGCTAATTTGAAGCAAGTA-TCACCAATGCTAT  195
      ||||||||| ||||||||||||| |||||||||||| |||||||||||||
seq2  TTTTTTTGT-ATGCATTAGCTAA-TTGAAGCAAGTATTCACCAATGCTAT  193

seq1  CTTAGAACCCAAATCTGCAAAGTGACATTTTAAAG-GCAGTTGGTGAGGT  244
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CTTAGAACCAAAATCTGCAAAGTGACATTTTAAAGAGCAGTTGGTGAGGT  243

seq1  CTGGCCATTCTGCTCTTGAA--GGAAGCAGGCAATGAACAC-AAATCCAT  291
      ||||||||||||||||||||  | ||||||||||||||||| ||||||||
seq2  CTGGCCATTCTGCTCTTGAAAGGAAAGCAGGCAATGAACACAAAATCCAT  293

seq1  GCTCCAGGCTGGGCACATGTGAGTGCATTTCTACATCTTACACACACTCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGCTGGGCACATGTGAGTGCATTTCTACATCTTACACACACTCT  343

seq1  TTATTTGGTTTGAACATATAAAATAGTTTTTTATTCTAATTTTATTTAGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGTTTGAACATATAAAATAGTTTTTTATTCTAATTTTATTTAGT  393

seq1  CCTGTGATAATAATAGCTAAATTTTGGAAGCTATAAAACACAAATTTAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATAATAATAGCTAAATTTTGGAAGCTATAAAACACAAATTTAAA  443

seq1  ACCACTTCTTAGAATTGGCAAATATATTCAAAGTTGCTGCCTAAGTTAGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTCTTAGAATTGGCAAATATATTCAAAGTTGCTGCCTAAGTTAGT  493

seq1  TTTATTTTATGGAGGCTTTTGGGAGGATATTTTAACAGTTATTAATTTTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATGGAGGCTTTTGGGAGGATATTTTAACAGTTATTAATTTTA  543

seq1  GTAGAGTTTTCCAGGAAAATCATTTGTCTTTAAAGAATCTCCAGCTGCAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTTTCCAGGAAAATCATTTGTCTTTAAAGAATCTCCAGCTGCAT  593

seq1  ATGTAGCAGAGGACAGCCTAGTCGGCCATCACTAGGAGGAGAGATCCTTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAGAGGACAGCCTAGTCGGCCATCACTAGGAGGAGAGATCCTTG  643

seq1  GTCTTGCGAAGATTCTATGCGCCAGTATAGGGGAATGCCAAGGCAAAGAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCGAAGATTCTATGCGCCAGTATAGGGGAATGCCAAGGCAAAGAA  693

seq1  GTGGGAGTGGGTGGGTTGGGAAGCAGGGAGAGGGAGGAGAGTATAGGGGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTGGGTGGGTTGGGAAGCAGGGAGAGGGAGGAGAGTATAGGGGA  743

seq1  TTTTTGGAGAGGAAACTAGGAAAGGGGATAGCATTTGAAATGTAAATGAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAGAGGAAACTAGGAAAGGGGATAGCATTTGAAATGTAAATGAA  793

seq1  GAAAACATCTAATAAAAAAGAATTATAATTATAATTCTAACCCTAATTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATCTAATAAAAAAGAATTATAATTATAATTCTAACCCTAATTCT  843

seq1  ACCTTAGGCAATTATAAAGATGAAATAGAACTTATTCTAGAATTATTTGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGGCAATTATAAAGATGAAATAGAACTTATTCTAGAATTATTTGA  893

seq1  CTTAACAGTATTTTGCTTTCCTTCTGAAACATTCTTTTTTTTTTGTGGAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAGTATTTTGCTTTCCTTCTGAAACATTCTTTTTTTTTTGTGGAT  943

seq1  AATGTCTATGTTAAGATTTATCACACATACAAAAATCCTGGAAAAAAAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTATGTTAAGATTTATCACACATACAAAAATCCTGGAAAAAAAAA  993

seq1  CCAAACCAAACCAAACCAAAACCCTTTTCAAATCCTTCAGTAAGGCTCCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAACCAAACCAAAACCCTTTTCAAATCCTTCAGTAAGGCTCCC  1043

seq1  CAGTAAGACTCTGCACTGAACTAGGCGGAGGCGCTACAGACTGTACACTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGACTCTGCACTGAACTAGGCGGAGGCGCTACAGACTGTACACTA  1093

seq1  CGCTAGAGTGTGCTTCGACTCTAGCATTTTGTGTCTATCATCTGGAGTCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGAGTGTGCTTCGACTCTAGCATTTTGTGTCTATCATCTGGAGTCA  1143

seq1  TAAAAACCCCATACTCAGTCCACAGTTTAGCTGTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCCCATACTCAGTCCACAGTTTAGCTGTGAATTC  1183


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