BAC Information

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BAC

Clone NameB6Ng01-226G08
Chromosome12 (Build37)17 (Build37)
Map Location 13,434,056 - 13,435,26130,768,746 - 30,769,233
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1
Downstream geneLOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226G08.bB6Ng01-226G08.g
ACCGA040348GA040349
length1,197260
definitionB6Ng01-226G08.b B6Ng01-226G08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,434,056 - 13,435,261)(30,768,746 - 30,769,233)
sequence
gaattccagaggactttccaagtaggtttccacacaatgctgccaggaca
agcaccaccctgaatgccatgcttacttggcccattttcatgctatcgag
cacagtcatgctgtggtttccatgtcaatccatgaccatttatgtgtatg
gcacttgtgattgatctagagccttgtcatgctagtcatgtgctgtacca
caattgagctctaccacagatttgtatttgttattttgtgacaacctcta
cattgtccaggatgatcttgaacttgctctgtggcacacacaggctttga
acttgcaaacttcttgcctctgtatggtaagtagcttggatttttaggtc
tgtaccaccaggtccagctatttaacctctttctgtagacggacatttat
aacatctccaacttctggaatatacacctagtagtggaatcactgaagca
tagaatactcatgagtccagattgtgaacacagagccaagcactttctct
actggctatagaaatctatgctatagtcagacagagccagagtcctactt
ggtctgctattaacatatgatatatcatggtattttaattgaagcagttc
ttgtaagtacatgtcatattatctttttagtcatctatataatatatact
gggaaatatatctcctagagtgccacttattcaataagttgtccatcttt
ttacccaggttgtactcatacatgcgttggggtcatgggccttatgaaat
atgcaaataatgagatttctagtaccttatgaattattctgttttcttac
taatgtcctatgataggatttaaaccaggtgatgatggtgcacacctcta
ctcccagcacttgggaggcaaggaaagcagatctctgaggttgaggccag
cgtgatctacaaagcgagttccatgatagtcaagagtacacaaagaaacc
ctacctcaaaaacaaacaaacaaacaaatatataataatatatatatttg
tattactatatttttgcttaggattacattttttatattctgagaagtgt
ttgcttactctaagtcacagaggtgctatgctcatttttattcttttttt
actttctattgattctttgtgaactttatatcatgcacccaatgcattca
ttccctccattcgtagatcagctctggtaccgttattgacaaagaac

aagcagggcaggaacttaggggtaggtgctgatgcagatgcaatagaggg
gtgctgcttactggcttgctcatcatggcttgctcaacctgttttcttat
agaacccaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag
agagagagagagagagagagagatatacagagaccgagattagagaggag
attctgatttttttttatagattttgcttgtgtcttgaatactctgatct
ttcttttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_13434056_13435261
seq2: B6Ng01-226G08.b_43_1239 (reverse)

seq1  GTTCTTTTGTC-ATAAGGGTA-CAGAGCTGATTCTAAGGGATGGA-GGAA  47
      |||| |||||| |||| |||| ||||||||| ||| | | ||||| ||||
seq2  GTTC-TTTGTCAATAACGGTACCAGAGCTGA-TCT-ACGAATGGAGGGAA  47

seq1  TGAATGGCATTGGGTGCATGATATTAAAGTCACAAAGAATCAATAGAAAG  97
      ||||| |||||||||||||||||| ||  |||||||||||||||||||||
seq2  TGAAT-GCATTGGGTGCATGATATAAAGTTCACAAAGAATCAATAGAAAG  96

seq1  TTAAAAAAAGAT-AAAATGAGCATAGCACCTCTGTGACCTTAGAGTAAGC  146
      | ||||||  || |||||||||||||||||||||||| ||||||||||||
seq2  TAAAAAAAGAATAAAAATGAGCATAGCACCTCTGTGA-CTTAGAGTAAGC  145

seq1  AAACACTTCTCAG-ATAT-AAAAATGTAATCCTAAAGCAAAAATATAGTA  194
      ||||||||||||| |||| |||||||||||||| ||||||||||||||||
seq2  AAACACTTCTCAGAATATAAAAAATGTAATCCT-AAGCAAAAATATAGTA  194

seq1  ATACAAATTATTATTATTATTATTATTATTATTTTGTTTTGTTTGTTTGT  244
      |||||||       |||   |||||||| ||| ||  |||||||||||| 
seq2  ATACAAA-------TATATATATTATTA-TATATTTGTTTGTTTGTTTG-  235

seq1  TTTTTGAGGTAGGGTTTCTTTGTGTACTCTTGACTATCATGGAACTCGCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGGTAGGGTTTCTTTGTGTACTCTTGACTATCATGGAACTCGCT  285

seq1  TTGTAGATCACGCTGGCCTCAACCTCAGAGATCTGCTTTCCTTGCCTCCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATCACGCTGGCCTCAACCTCAGAGATCTGCTTTCCTTGCCTCCC  335

seq1  AAGTGCTGGGAGTAGAGGTGTGCACCATCATCACCTGGTTTAAATCCTAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGAGTAGAGGTGTGCACCATCATCACCTGGTTTAAATCCTAT  385

seq1  CATAGGACATTAGTAAGAAAACAGAATAATTCATAAGGTACTAGAAATCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACATTAGTAAGAAAACAGAATAATTCATAAGGTACTAGAAATCT  435

seq1  CATTATTTGCATATTTCATAAGGCCCATGACCCCAACGCATGTATGAGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGCATATTTCATAAGGCCCATGACCCCAACGCATGTATGAGTA  485

seq1  CAACCTGGGTAAAAAGATGGACAACTTATTGAATAAGTGGCACTCTAGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGGTAAAAAGATGGACAACTTATTGAATAAGTGGCACTCTAGGA  535

seq1  GATATATTTCCCAGTATATATTATATAGATGACTAAAAAGATAATATGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTCCCAGTATATATTATATAGATGACTAAAAAGATAATATGAC  585

seq1  ATGTACTTACAAGAACTGCTTCAATTAAAATACCATGATATATCATATGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTACAAGAACTGCTTCAATTAAAATACCATGATATATCATATGT  635

seq1  TAATAGCAGACCAAGTAGGACTCTGGCTCTGTCTGACTATAGCATAGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAGACCAAGTAGGACTCTGGCTCTGTCTGACTATAGCATAGATT  685

seq1  TCTATAGCCAGTAGAGAAAGTGCTTGGCTCTGTGTTCACAATCTGGACTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCCAGTAGAGAAAGTGCTTGGCTCTGTGTTCACAATCTGGACTC  735

seq1  ATGAGTATTCTATGCTTCAGTGATTCCACTACTAGGTGTATATTCCAGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATTCTATGCTTCAGTGATTCCACTACTAGGTGTATATTCCAGAA  785

seq1  GTTGGAGATGTTATAAATGTCCGTCTACAGAAAGAGGTTAAATAGCTGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGATGTTATAAATGTCCGTCTACAGAAAGAGGTTAAATAGCTGGA  835

seq1  CCTGGTGGTACAGACCTAAAAATCCAAGCTACTTACCATACAGAGGCAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGTACAGACCTAAAAATCCAAGCTACTTACCATACAGAGGCAAG  885

seq1  AAGTTTGCAAGTTCAAAGCCTGTGTGTGCCACAGAGCAAGTTCAAGATCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCAAGTTCAAAGCCTGTGTGTGCCACAGAGCAAGTTCAAGATCA  935

seq1  TCCTGGACAATGTAGAGGTTGTCACAAAATAACAAATACAAATCTGTGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACAATGTAGAGGTTGTCACAAAATAACAAATACAAATCTGTGGT  985

seq1  AGAGCTCAATTGTGGTACAGCACATGACTAGCATGACAAGGCTCTAGATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAATTGTGGTACAGCACATGACTAGCATGACAAGGCTCTAGATC  1035

seq1  AATCACAAGTGCCATACACATAAATGGTCATGGATTGACATGGAAACCAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAGTGCCATACACATAAATGGTCATGGATTGACATGGAAACCAC  1085

seq1  AGCATGACTGTGCTCGATAGCATGAAAATGGGCCAAGTAAGCATGGCATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACTGTGCTCGATAGCATGAAAATGGGCCAAGTAAGCATGGCATT  1135

seq1  CAGGGTGGTGCTTGTCCTGGCAGCATTGTGTGGAAACCTACTTGGAAAGT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGTGCTTGTCCTGGCAGCATTGTGTGGAAACCTACTTGGAAAGT  1185

seq1  CCTCTGGAATTC  1206
      ||||||||||||
seq2  CCTCTGGAATTC  1197


seq1: chr17_30768746_30769233
seq2: B6Ng01-226G08.g_189_330 (reverse)

seq1  TAGAAAAGAAAGATCACTGTTTTCTACTCAAGTCACTGGGAAAGACCCAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACAGCTCTGAATGCTTATTACTGCCAAAGTGTGCAGTCGAAATCAGCAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTGAAAGCCTCCTGTCGTGCCCAGCTTGGAAAGCACATGTACACAGGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGTGGTCAAAAACCACCAGGGGATAAACTGTGTTGGGCAATAATGCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCCAATAATTTTAAAAATTGAATGTGTGCTTCCCCCTAAAAAAATAGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GTTCATTTGAAAATGGGAAACTCATTGAGATTTACTGCATACTGATTTCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCATGTAGTATGACAACTCAATTTTAGCTTTTCTTTGAAGTGTAAATA  350
                                          | |||    ||  |
seq2  ------------------------------------TAGAA----AAGAA  10

seq1  ATAGCAGCTAATTAAAAGAAATTGCAAATCATTTGAGAATAATAGTTCTT  400
      | | |||   ||| ||   |   |||||  || |   || || | |    
seq2  AGATCAGAGTATTCAAGACACAAGCAAA--ATCTATAAAAAAAAATCAGA  58

seq1  TTCTCCCTGTTCCTCTTCTTTCTCT-TCTTCCTCTCTCTCTCTCTCTCTC  449
       |||||      ||||  | ||  | |||   | ||||||||||||||||
seq2  ATCTCC-----TCTCTAATCTCGGTCTCTGTATATCTCTCTCTCTCTCTC  103

seq1  TCTCTCTCTCACACACACACACACACACACACACACACA  488
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCACACACACACACACACACACACACACACA  142


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