BAC Information

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BAC

Clone NameB6Ng01-226O23
Chromosome12 (Build37)
Map Location 34,005,667 - 34,006,433
singlet/doubletsinglet
Overlap geneAtxn7l1
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
Downstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226O23.bB6Ng01-226O23.g
ACCGA040736GA040737
length1,167773
definitionB6Ng01-226O23.b B6Ng01-226O23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
acaaatgctttctccccatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggatttcagtatattaagcc
atccctgcatccctggaataaaacctacttggttaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgagtatttttgc
atcaatattcataagagaaattggtctgaagttctctatctttgttggat
ctttcggtggtttaggtatcagagtaattgtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgaaagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaatgactgcttctatttct
ttaggggatatgggactgtttagatcattaacttgatcctgatttaactt
tggtacctggtatctgtctagaaatttgtccattttgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatcagatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctagttttgttcat
taagatgttgtccctgtgccctctagtgagtctagctaagggtttatgta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttgggttgatttcacccctgagttttgatt
atttcctgctgtctattcctcttgggtgaattttcttcctttttttctag
agcctttagatgtgtttgtcaagctgctagtatgtgctctctcccgtttc
ttcttggaggcactcagagctatgagttttccctcttagaaatgctttca
tgtcgtccataggtttgggtatgttgtggcttccatttcattaaacctct
cgaaagtctttggaattctttctttaattcttccatggacccagggtaat
cattgagagagtgtgttcaggtactcctagtgcaatgtggtttttccata
taacttatgtgtgcttg
gaattcattttgttttatgtgttttgcctgcatgtttgaacacgcatcat
gtgcatgcttggtgccttcagaggtcaaaatagggcatcagattcccggg
cactgaagttacagatggtacaaaccaccatgtgggtgctgaaacttgaa
cctgggtcttctgtgaaaacaataagtgctcttaactgctgagccatctc
tatactctcttccccctttaaagactggggtctcactatgtaatgctggt
tgccctggaactctatatgtagaccaggctgaccttcagttcacagagat
ctgctacctcctctgcctctatagcactaggattaaatgtttgtattacc
acaccgacttacccatgtttttaagtaagaactaacttaatccttttgaa
aaaataagaggctcaggtcctaaagacatccccagatcaatgtgcattgc
ctggctttgcgacttcatgtctaattacttttctattgttgtggtaagac
caggcaacttagaaagaaaatgtttaatttgggccgacaggttcagtgtg
cgtgtgcgcacacacgagagagagagagagagagagagagagagagagag
agagagagagagagagagagagagagattgagaatggctttgagattttt
tttaaacctccaatcccttcctgtagtgacatgtagtgacatacctttct
ccaacaaaggatcttttctaatctttcccaaacagttctaccacttagga
ccaagcattcaaatacaggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34005667_34006433
seq2: B6Ng01-226O23.g_65_837

seq1  GAATTCATTTTGTTTTATGTGTTTTGCCTGCATGTTTGAACACGCATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTTTTATGTGTTTTGCCTGCATGTTTGAACACGCATCAT  50

seq1  GTGCATGCTTGGTGCCTTCAGAGGTCAAAATAGGGCATCAGATTCCCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCTTGGTGCCTTCAGAGGTCAAAATAGGGCATCAGATTCCCGGG  100

seq1  CACTGAAGTTACAGATGGTACAAACCACCATGTGGGTGCTGAAACTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGTTACAGATGGTACAAACCACCATGTGGGTGCTGAAACTTGAA  150

seq1  CCTGGGTCTTCTGTGAAAACAATAAGTGCTCTTAACTGCTGAGCCATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCTTCTGTGAAAACAATAAGTGCTCTTAACTGCTGAGCCATCTC  200

seq1  TATACTCTCTTCCCCCTTTAAAGACTGGGGTCTCACTATGTAATGCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTCTTCCCCCTTTAAAGACTGGGGTCTCACTATGTAATGCTGGT  250

seq1  TGCCCTGGAACTCTATATGTAGACCAGGCTGACCTTCAGTTCACAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGAACTCTATATGTAGACCAGGCTGACCTTCAGTTCACAGAGAT  300

seq1  CTGCTACCTCCTCTGCCTCTATAGCACTAGGATTAAATGTTTGTATTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACCTCCTCTGCCTCTATAGCACTAGGATTAAATGTTTGTATTACC  350

seq1  ACACCGACTTACCCATGTTTTTAAGTAAGAACTAACTTAATCCTTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGACTTACCCATGTTTTTAAGTAAGAACTAACTTAATCCTTTTGAA  400

seq1  AAAATAAGAGGCTCAGGTCCTAAAGACATCCCCAGATCAATGTGCATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGAGGCTCAGGTCCTAAAGACATCCCCAGATCAATGTGCATTGC  450

seq1  CTGGCTTTGCGACTTCATGTCTAATTACTTTTCTATTGTTGTGGTAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTGCGACTTCATGTCTAATTACTTTTCTATTGTTGTGGTAAGAC  500

seq1  CAGGCAACTTAGAAAGAAAATGTTTAATTTGGGCCGACAGGTTCAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAACTTAGAAAGAAAATGTTTAATTTGGGCCGACAGGTTCAGTGTG  550

seq1  CGTGTGCGCACACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCGCACACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGATTGAGAATGGC-TTGAGA-TTTT  648
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGATTGAGAATGGCTTTGAGATTTTT  650

seq1  TTTAAACCTCCAAT-CCTTCCTGTAGTGACATGTAGTGACATACC-TTCT  696
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TTTAAACCTCCAATCCCTTCCTGTAGTGACATGTAGTGACATACCTTTCT  700

seq1  CCAAC-AAGGATC-TTTCTAATCCTTCCCAAACAGTTCTACCACTTAGGA  744
      ||||| ||||||| ||||||||| ||||||||||||||||||||||||||
seq2  CCAACAAAGGATCTTTTCTAATCTTTCCCAAACAGTTCTACCACTTAGGA  750

seq1  CCAAGCATTCAAATACAGGAATT  767
      |||||||||||||||||||||||
seq2  CCAAGCATTCAAATACAGGAATT  773